Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25860 Nelumbo nucifera HOM05D005099 ORTHO05D006087 9.2e-41 169.9 90 100.0
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.3e-31 139.4 92 83.7
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.1e-22 109.8 93 67.7
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 3.9e-15 84.7 92 50.0
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 2.5e-14 82.0 94 48.9
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 4.3e-14 81.3 98 52.0
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.1e-13 79.0 61 65.6
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 2.8e-13 78.6 98 48.0
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 6.2e-13 77.4 99 43.4
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 8.1e-13 77.0 96 43.8
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 3.1e-12 75.1 94 50.0
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 1.2e-11 73.2 96 55.2
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 4.4e-11 71.2 94 46.8
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 7.6e-11 70.5 99 44.4
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 9.9e-11 70.1 108 38.9
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.7e-10 69.3 92 42.4
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 1.7e-10 69.3 95 41.1
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 2.2e-10 68.9 102 52.0
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 2.9e-10 68.6 95 42.1
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 3.8e-10 68.2 103 43.7
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 3.8e-10 68.2 94 42.6
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 6.4e-10 67.4 92 48.9
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 1.9e-09 65.9 97 42.3
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 1.9e-09 65.9 97 42.3
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 1.9e-09 65.9 100 39.0
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 1.9e-09 65.9 105 42.9
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 2.4e-09 65.5 100 40.0
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 4.2e-09 64.7 95 44.2
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 5.4e-09 64.3 94 38.3
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 9.3e-09 63.5 106 52.8
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 1.2e-08 63.2 97 40.2
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 1.2e-08 63.2 95 43.2
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 1.6e-08 62.8 98 51.0
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 2.1e-08 62.4 107 39.3
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 2.1e-08 62.4 98 45.9
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.1e-08 62.4 98 45.9
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.1e-08 62.4 98 45.9
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 2.1e-08 62.4 98 38.8
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 2.1e-08 62.4 95 37.9
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 2.1e-08 62.4 95 43.2
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 4.6e-08 61.2 98 38.8
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 4.6e-08 61.2 96 46.9
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 7.8e-08 60.5 99 42.4
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 1.3e-07 59.7 99 40.4
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.3e-07 58.9 96 45.8
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 3.0e-07 58.5 84 47.6
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 3.0e-07 58.5 101 46.5
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 3.0e-07 58.5 110 38.2
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 3.9e-07 58.2 102 47.1
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 6.6e-07 57.4 102 46.1
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 8.7e-07 57.0 94 38.3
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 1.5e-06 56.2 95 47.4
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 1.9e-06 55.8 99 34.3
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.5e-06 55.5 101 37.6
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 2.5e-06 55.5 95 45.3
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 3.3e-06 55.1 99 36.4
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 4.3e-06 54.7 91 40.7
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 4.3e-06 54.7 91 40.7
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 4.3e-06 54.7 91 40.7
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 5.6e-06 54.3 106 35.8
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 5.6e-06 54.3 108 33.3
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 7.3e-06 53.9 100 46.0
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 7.3e-06 53.9 90 42.2


User provided reference genes

Program Settings