Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 6.3e-59 230.7 129 100.0
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 4.5e-25 118.2 82 74.4
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 7.8e-25 117.5 88 69.3
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 5.0e-24 114.8 86 66.3
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 9.5e-23 110.5 86 66.3
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 4.7e-22 108.2 85 68.2
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 6.1e-22 107.8 85 68.2
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 1.0e-21 107.1 103 59.2
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 3.0e-21 105.5 90 64.4
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 4.0e-21 105.1 86 66.3
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 5.2e-21 104.8 108 58.3
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 6.8e-21 104.4 73 72.6
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 8.9e-21 104.0 87 67.8
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.2e-20 103.6 91 63.7
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 1.2e-20 103.6 85 64.7
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.5e-20 103.2 85 63.5
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 1.5e-20 103.2 85 63.5
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 1.5e-20 103.2 88 68.2
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 1.5e-20 103.2 74 70.3
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.0e-20 102.8 90 71.1
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 2.0e-20 102.8 86 66.3
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 2.6e-20 102.4 103 56.3
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 2.6e-20 102.4 103 56.3
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.6e-20 102.4 86 62.8
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 7.5e-20 100.9 86 61.6
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 7.5e-20 100.9 104 58.7
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 1.3e-19 100.1 88 60.2
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 2.9e-19 99.0 86 70.9
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 4.9e-19 98.2 114 50.9
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 4.1e-18 95.1 84 71.4
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 9.2e-18 94.0 88 70.5
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.6e-17 93.2 90 66.7
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 1.6e-17 93.2 112 49.1
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.6e-17 93.2 99 54.5
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 1.7e-16 89.7 90 64.4
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.7e-16 89.7 130 44.6
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 2.3e-16 89.4 104 51.9
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 6.6e-16 87.8 112 48.2
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 1.1e-15 87.0 87 64.4
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 1.9e-15 86.3 133 42.1
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 1.9e-15 86.3 89 56.2
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 2.5e-15 85.9 88 55.7
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 2.5e-15 85.9 79 59.5
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 3.3e-15 85.5 87 56.3
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 7.3e-15 84.3 90 61.1
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 7.3e-15 84.3 126 42.9
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 1.2e-14 83.6 101 51.5
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 2.1e-14 82.8 99 54.5
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 2.1e-14 82.8 111 46.8
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 2.8e-14 82.4 104 51.0
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 1.4e-13 80.1 99 50.5
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 1.4e-13 80.1 86 61.6
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 1.8e-13 79.7 86 55.8
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 4.0e-13 78.6 45 84.4
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 4.0e-13 78.6 41 92.7
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 5.2e-13 78.2 90 61.1
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 6.8e-13 77.8 165 37.0
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 8.9e-13 77.4 103 44.7
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 8.9e-13 77.4 41 92.7
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 8.9e-13 77.4 41 90.2
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.2e-12 77.0 86 52.3
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 1.2e-12 77.0 41 90.2
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 1.5e-12 76.6 91 50.5
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 2.0e-12 76.3 90 60.0
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 2.6e-12 75.9 86 48.8
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 2.6e-12 75.9 90 63.3
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 3.4e-12 75.5 86 50.0
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 4.4e-12 75.1 127 41.7
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 4.4e-12 75.1 86 48.8
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 4.4e-12 75.1 86 51.2
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.4e-12 75.1 90 50.0
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 4.4e-12 75.1 41 87.8
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 5.8e-12 74.7 51 78.4
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 5.8e-12 74.7 86 58.1
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 5.8e-12 74.7 90 58.9
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 7.5e-12 74.3 84 56.0
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 7.5e-12 74.3 86 53.5
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 7.5e-12 74.3 43 83.7
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 1.3e-11 73.6 74 64.9
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 1.3e-11 73.6 90 53.3
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 1.7e-11 73.2 86 57.0
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 1.7e-11 73.2 81 61.7
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.2e-11 72.8 80 51.2
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 2.9e-11 72.4 41 85.4
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 2.9e-11 72.4 86 53.5
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.9e-11 72.4 90 56.7
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 2.9e-11 72.4 89 49.4
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 3.7e-11 72.0 47 80.9
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 3.7e-11 72.0 90 56.7
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 4.9e-11 71.6 58 65.5
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 6.4e-11 71.2 86 59.3
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 1.1e-10 70.5 97 45.4
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 1.4e-10 70.1 48 77.1
Gorai.007G237400 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.9e-10 69.7 85 49.4
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 2.4e-10 69.3 95 46.3
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 2.4e-10 69.3 84 48.8
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 2.4e-10 69.3 80 52.5
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 2.4e-10 69.3 89 48.3
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 2.4e-10 69.3 89 56.2
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 2.4e-10 69.3 81 61.7
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 2.4e-10 69.3 41 80.5
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 2.4e-10 69.3 41 78.0
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 3.2e-10 68.9 107 44.9
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 4.1e-10 68.6 74 51.4
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 5.4e-10 68.2 88 47.7
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.4e-10 68.2 41 78.0
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.4e-10 68.2 41 78.0
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 5.4e-10 68.2 41 78.0
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 7.0e-10 67.8 89 47.2
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 7.0e-10 67.8 87 44.8
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 9.2e-10 67.4 40 85.0
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 9.2e-10 67.4 40 85.0
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 9.2e-10 67.4 42 76.2
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 9.2e-10 67.4 40 80.0
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 9.2e-10 67.4 86 55.8
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 1.2e-09 67.0 72 54.2
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.2e-09 67.0 85 55.3
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.6e-09 66.6 86 53.5
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 2.0e-09 66.2 85 50.6
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 2.0e-09 66.2 111 42.3
Manes.05G064201 Manihot esculenta HOM05D003821 ORTHO05D004449 2.7e-09 65.9 60 60.0
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 4.6e-09 65.1 90 54.4
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 4.6e-09 65.1 74 60.8
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 6.0e-09 64.7 41 80.5
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 6.0e-09 64.7 95 45.3
Zm00001eb380410 Zea mays HOM05D003821 ORTHO05D004449 6.0e-09 64.7 75 50.7
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 7.8e-09 64.3 101 44.6
Gohir.D11G223400 Gossypium hirsutum HOM05D003821 ORTHO05D004449 7.8e-09 64.3 64 54.7
SHI29056 Sapria himalayana HOM05D000030 ORTHO05D000009 7.8e-09 64.3 90 46.7
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.0e-08 63.9 90 53.3
Ah.04g153550 Amaranthus hybridus HOM05D003821 ORTHO05D004449 1.3e-08 63.5 87 48.3
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 1.3e-08 63.5 89 46.1
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 1.3e-08 63.5 85 48.2
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.3e-08 63.5 40 82.5
Gohir.A11G115200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.3e-08 63.5 90 53.3
Gohir.D11G120200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.3e-08 63.5 90 53.3
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.3e-08 63.5 60 60.0
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 1.3e-08 63.5 86 46.5
Zm00001eb098770 Zea mays HOM05D003821 ORTHO05D004449 1.7e-08 63.2 82 56.1
Gorai.007G128900 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.3e-08 62.8 90 53.3
Mapoly0039s0070 Marchantia polymorpha HOM05D003821 ORTHO05D004449 2.3e-08 62.8 86 44.2
Phvul.007G106500 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 2.3e-08 62.8 83 54.2
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 2.3e-08 62.8 118 40.7
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 2.3e-08 62.8 57 64.9
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.0e-08 62.4 90 52.2
PGR004G1635 Punica granatum HOM05D003821 ORTHO05D004449 3.0e-08 62.4 81 58.0
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 3.9e-08 62.0 87 48.3
Glyma.10G019600 Glycine max HOM05D003821 ORTHO05D004449 3.9e-08 62.0 83 54.2
Gorai.008G011000 Gossypium raimondii HOM05D003821 ORTHO05D004449 5.0e-08 61.6 100 50.0
Pp3c16_4400 Physcomitrium patens HOM05D003821 ORTHO05D004449 5.0e-08 61.6 44 70.5
Gohir.A10G164000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 8.6e-08 60.8 69 50.7
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 1.1e-07 60.5 34 82.4
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 1.1e-07 60.5 85 44.7
PSO832G3070 Papaver somniferum HOM05D003821 ORTHO05D004449 1.5e-07 60.1 86 43.0
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.9e-07 59.7 41 73.2
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 4.3e-07 58.5 53 58.5
A08p11990 Brassica napus HOM05D003821 ORTHO05D004449 4.3e-07 58.5 95 43.2
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.3e-07 58.5 108 38.0
Glyma.02G154700 Glycine max HOM05D003821 ORTHO05D004449 7.3e-07 57.8 83 53.0
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 9.5e-07 57.4 110 41.8
Aa31LG8G3720 Aethionema arabicum HOM05D003821 ORTHO05D004449 1.2e-06 57.0 73 47.9
Aa31LG10G6300 Aethionema arabicum HOM05D003821 ORTHO05D004449 1.6e-06 56.6 124 35.5
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 1.6e-06 56.6 101 43.6
HanXRQChr01g0001301 Helianthus annuus HOM05D003821 ORTHO05D004449 2.8e-06 55.8 34 82.4
PSO210G2740 Papaver somniferum HOM05D003821 ORTHO05D004449 4.7e-06 55.1 86 40.7
Gohir.A02G049300 Gossypium hirsutum HOM05D003821 ORTHO05D004449 6.2e-06 54.7 74 54.1
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 6.2e-06 54.7 105 36.2


User provided reference genes

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