Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25830 Nelumbo nucifera HOM05D006406 ORTHO05D007883 3.0e-204 714.9 357 100.0
TAR633G0157 Trochodendron aralioides HOM05D006406 ORTHO05D007883 6.4e-146 521.2 357 73.9
Cfa006628 Carpinus fangiana HOM05D006406 ORTHO05D007883 2.5e-126 456.1 357 66.4
Haze_04140 Corylus avellana HOM05D006406 ORTHO05D007883 2.5e-126 456.1 358 65.1
CiPaw.08G161900 Carya illinoinensis HOM05D006406 ORTHO05D007883 2.2e-125 453.0 361 65.1
GSVIVG01031144001 Vitis vinifera HOM05D006406 ORTHO05D007883 2.2e-125 453.0 358 65.9
QL03p020986 Quercus lobata HOM05D006406 ORTHO05D007883 1.4e-124 450.3 359 64.9
Aqoxy5G00730 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 6.9e-124 448.0 360 64.2
Thecc.05G312900 Theobroma cacao HOM05D006406 ORTHO05D007883 5.9e-123 444.9 359 64.3
Hma1.2p1_1212F.1_g267260 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 1.0e-122 444.1 353 64.6
QL03p021882 Quercus lobata HOM05D006406 ORTHO05D007883 6.5e-122 441.4 359 63.2
Sabra13G0015900 Salix brachista HOM05D006406 ORTHO05D007883 8.5e-122 441.0 360 63.6
Sabra13G0020100 Salix brachista HOM05D006406 ORTHO05D007883 8.5e-122 441.0 361 63.4
COL.COLO4_10518 Corchorus olitorius HOM05D006406 ORTHO05D007883 2.5e-121 439.5 357 64.1
Duzib177G0190 Durio zibethinus HOM05D006406 ORTHO05D007883 3.2e-121 439.1 357 63.9
Potri.013G017100 Populus trichocarpa HOM05D006406 ORTHO05D007883 3.2e-121 439.1 361 62.9
TWI12G0288 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 6.1e-120 434.9 360 63.9
RcHm_v2.0_Chr3g0455711 Rosa chinensis HOM05D006406 ORTHO05D007883 1.0e-119 434.1 357 63.6
Ciclev10001711m.g Citrus clementina HOM05D006406 ORTHO05D007883 1.4e-119 433.7 359 62.7
Manes.08G117600 Manihot esculenta HOM05D006406 ORTHO05D007883 1.4e-119 433.7 358 62.8
Atru.chr2.29 Acer truncatum HOM05D006406 ORTHO05D007883 3.0e-119 432.6 357 61.6
MBI18_g46420_MAGBIO Magnolia biondii HOM05D006406 ORTHO05D007883 3.0e-119 432.6 315 68.9
Rhsim07G0188300 Rhododendron simsii HOM05D006406 ORTHO05D007883 8.8e-119 431.0 357 62.5
Sc16g0008820 Simmondsia chinensis HOM05D006406 ORTHO05D007883 1.1e-118 430.6 357 60.8
Gorai.013G125700 Gossypium raimondii HOM05D006406 ORTHO05D007883 2.6e-118 429.5 361 62.3
Oeu043348.1 Olea europaea HOM05D006406 ORTHO05D007883 4.4e-118 428.7 360 61.9
Hund07096 Selenicereus undatus HOM05D006406 ORTHO05D007883 4.4e-118 428.7 344 62.8
Lj9C146T2 Lonicera japonica HOM05D006406 ORTHO05D007883 9.7e-118 427.6 326 64.1
Glyma.03G235700 Glycine max HOM05D006406 ORTHO05D007883 1.7e-117 426.8 358 61.5
vmacro04816 Vaccinium macrocarpon HOM05D006406 ORTHO05D007883 1.1e-116 424.1 369 60.4
MD04G1200800 Malus domestica HOM05D006406 ORTHO05D007883 1.4e-116 423.7 361 61.5
Nitab4.5_0003658g0090 Nicotiana tabacum HOM05D006406 ORTHO05D007883 1.8e-116 423.3 330 65.5
Carub.0006s2486 Capsella rubella HOM05D006406 ORTHO05D007883 2.4e-116 422.9 350 62.3
Gohir.A13G109200 Gossypium hirsutum HOM05D006406 ORTHO05D007883 2.4e-116 422.9 361 61.2
Cpa.g.sc48.95 Carica papaya HOM05D006406 ORTHO05D007883 3.1e-116 422.5 360 59.7
Gohir.D13G112000 Gossypium hirsutum HOM05D006406 ORTHO05D007883 4.1e-116 422.2 346 63.0
arahy.Tifrunner.gnm1.ann1.Q6XDLT Arachis hypogaea HOM05D006406 ORTHO05D007883 5.3e-116 421.8 357 60.2
CsaV3_1G038840 Cucumis sativus L. HOM05D006406 ORTHO05D007883 1.2e-115 420.6 357 59.7
Medtr7g112650 Medicago truncatula HOM05D006406 ORTHO05D007883 1.2e-115 420.6 358 60.3
TPR.G33225 Trifolium pratense HOM05D006406 ORTHO05D007883 1.2e-115 420.6 361 60.7
Lalb_Chr18g0045761 Lupinus albus HOM05D006406 ORTHO05D007883 2.0e-115 419.9 353 62.3
Psat0s27g0120 Pisum sativum HOM05D006406 ORTHO05D007883 2.0e-115 419.9 349 61.3
VMungo0540G0116 Vigna mungo HOM05D006406 ORTHO05D007883 2.0e-115 419.9 353 63.2
Eucgr.B01914 Eucalyptus grandis HOM05D006406 ORTHO05D007883 2.6e-115 419.5 381 60.4
AL6G39250 Arabidopsis lyrata HOM05D006406 ORTHO05D007883 4.5e-115 418.7 349 62.2
CAN.G1459.10 Capsicum annuum HOM05D006406 ORTHO05D007883 1.0e-114 417.5 316 66.5
PGR083G2713 Punica granatum HOM05D006406 ORTHO05D007883 1.3e-114 417.2 311 66.6
arahy.Tifrunner.gnm1.ann1.PP7FUY Arachis hypogaea HOM05D006406 ORTHO05D007883 2.2e-114 416.4 357 59.4
Aa31LG11G9460 Aethionema arabicum HOM05D006406 ORTHO05D007883 3.8e-114 415.6 349 61.9
Peaxi162Scf00037g01125 Petunia axillaris HOM05D006406 ORTHO05D007883 3.8e-114 415.6 343 64.1
AT5G27710 Arabidopsis thaliana HOM05D006406 ORTHO05D007883 5.0e-114 415.2 349 61.9
Ca_05800_v3 Cicer arietinum L. HOM05D006406 ORTHO05D007883 5.0e-114 415.2 353 60.3
Thhalv10005730m.g Eutrema salsugineum HOM05D006406 ORTHO05D007883 8.5e-114 414.5 353 61.8
Phvul.006G089700 Phaseolus vulgaris HOM05D006406 ORTHO05D007883 1.1e-113 414.1 355 60.3
ClCG03G017120 Citrullus lanatus HOM05D006406 ORTHO05D007883 1.9e-113 413.3 357 58.5
Prupe.6G320900 Prunus persica HOM05D006406 ORTHO05D007883 1.9e-113 413.3 331 64.7
Sopen01g043220 Solanum pennellii HOM05D006406 ORTHO05D007883 3.2e-113 412.5 325 63.1
Lj1g0022852 Lotus japonicus HOM05D006406 ORTHO05D007883 4.2e-113 412.1 354 59.9
Nitab4.5_0003844g0020 Nicotiana tabacum HOM05D006406 ORTHO05D007883 7.2e-113 411.4 317 65.6
SalBow7G2778 Salvia bowleyana HOM05D006406 ORTHO05D007883 1.6e-112 410.2 311 65.6
unitig_52.g17112 Utricularia gibba HOM05D006406 ORTHO05D007883 1.6e-112 410.2 367 60.8
Sp2g20880 Schrenkiella parvula HOM05D006406 ORTHO05D007883 2.7e-112 409.5 351 61.8
Hund07097 Selenicereus undatus HOM05D006406 ORTHO05D007883 3.6e-112 409.1 309 65.0
Actinidia35561 Actinidia chinensis HOM05D006406 ORTHO05D007883 4.7e-112 408.7 359 58.8
CANSAT54G1062 Cannabis sativa HOM05D006406 ORTHO05D007883 4.7e-112 408.7 358 58.9
Solyc01g099700.3 Solanum lycopersicum HOM05D006406 ORTHO05D007883 4.7e-112 408.7 325 62.8
PGSC0003DMG400007542 Solanum tuberosum HOM05D006406 ORTHO05D007883 7.9e-112 407.9 315 64.8
SGA_v2.0_scaffold172G38986 Striga asiatica HOM05D006406 ORTHO05D007883 2.3e-111 406.4 357 60.2
PSO210G1514 Papaver somniferum HOM05D006406 ORTHO05D007883 1.1e-110 404.1 358 60.1
THA.LOC104818716 Tarenaya hassleriana HOM05D006406 ORTHO05D007883 3.3e-110 402.5 356 61.2
Sed0006495 Sechium edule HOM05D006406 ORTHO05D007883 4.4e-110 402.1 362 57.2
TWI36G0652 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 4.4e-110 402.1 361 59.0
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 2.8e-109 399.4 329 64.1
EL10Ac4g09916 Beta vulgaris HOM05D006406 ORTHO05D007883 1.1e-108 397.5 324 60.8
PSO210G1688 Papaver somniferum HOM05D006406 ORTHO05D007883 7.0e-108 394.8 354 59.6
A09p05410 Brassica napus HOM05D006406 ORTHO05D007883 1.2e-107 394.0 359 58.8
BraA09t36179Z Brassica rapa HOM05D006406 ORTHO05D007883 1.6e-107 393.7 359 58.8
CSS0003718 Camellia sinensis var. sinensis HOM05D006406 ORTHO05D007883 2.6e-107 392.9 365 58.1
BcaB04g19684 Brassica carinata HOM05D006406 ORTHO05D007883 6.5e-106 388.3 351 59.0
BcaC04g23642 Brassica carinata HOM05D006406 ORTHO05D007883 9.4e-105 384.4 353 59.8
AUR62000764 Chenopodium quinoa HOM05D006406 ORTHO05D007883 1.2e-104 384.0 315 61.0
CARHR186230 Cardamine hirsuta HOM05D006406 ORTHO05D007883 3.6e-104 382.5 331 60.4
Migut.N01744 Erythranthe guttata HOM05D006406 ORTHO05D007883 1.0e-103 380.9 357 56.6
C09p05890 Brassica napus HOM05D006406 ORTHO05D007883 5.2e-103 378.6 354 59.0
BolC9t53515H Brassica oleracea HOM05D006406 ORTHO05D007883 5.2e-103 378.6 354 59.0
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 5.2e-103 378.6 320 63.4
Os07g0673000 Oryza sativa ssp. japonica HOM05D006406 ORTHO05D007883 1.5e-102 377.1 283 64.7
CDE11G0411 Ceratophyllum demersum HOM05D001335 ORTHO05D001184 2.6e-102 376.3 317 59.9
Cc02_g34120 Coffea canephora HOM05D006406 ORTHO05D007883 8.2e-101 371.3 219 79.0
Dinv30810 Davidia involucrata HOM05D006406 ORTHO05D007883 1.8e-100 370.2 264 69.7
Lsat_1_v5_gn_9_88181 Lactuca sativa HOM05D006406 ORTHO05D007883 2.2e-98 363.2 324 56.5
ECA236G2290 Erigeron canadensis HOM05D006406 ORTHO05D007883 6.5e-98 361.7 300 59.0
HanXRQChr11g0339311 Helianthus annuus HOM05D006406 ORTHO05D007883 3.2e-97 359.4 322 58.4
AUR62005205 Chenopodium quinoa HOM05D006406 ORTHO05D007883 4.2e-97 359.0 334 56.9
Ah.06g189770 Amaranthus hybridus HOM05D006406 ORTHO05D007883 8.8e-95 351.3 282 61.0
ATR0796G153 Amborella trichopoda HOM05D006406 ORTHO05D007883 1.2e-94 350.9 235 68.9
SEGI_05797 Sequoiadendron giganteum HOM05D006406 ORTHO05D007883 9.5e-89 331.3 375 49.3
Glyma.19G233500 Glycine max HOM05D006406 ORTHO05D007883 6.1e-88 328.6 302 58.6
DCAR_029393 Daucus carota HOM05D006406 ORTHO05D007883 1.0e-87 327.8 354 51.1
MELO3C015308.2 Cucumis melo HOM05D006406 ORTHO05D007883 6.4e-77 292.0 363 46.6
FvH4_6g06560 Fragaria vesca HOM05D006406 ORTHO05D007883 1.4e-76 290.8 266 59.8
SMO172G0153 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 2.9e-69 266.5 298 48.0
Mapoly0054s0047 Marchantia polymorpha HOM05D006406 ORTHO05D007883 1.1e-68 264.6 315 43.8
Pp3c6_26830 Physcomitrium patens HOM05D006406 ORTHO05D007883 7.0e-68 261.9 383 39.9
SMO172G0232 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 1.0e-66 258.1 298 46.6
Zm00001eb111280 Zea mays HOM05D006406 ORTHO05D007883 1.9e-65 253.8 225 56.9
Hma1.2p1_1212F.1_g267270 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 3.3e-65 253.1 239 58.6
HPP92_011843 Vanilla planifolia HOM05D006406 ORTHO05D007883 1.6e-59 234.2 336 42.6
Oeu043349.1 Olea europaea HOM05D006406 ORTHO05D007883 3.5e-59 233.0 246 52.8
CBR_g19246 Chara braunii HOM05D006406 ORTHO05D007883 7.8e-59 231.9 262 44.7
PGSC0003DMG400024710 Solanum tuberosum HOM05D006406 ORTHO05D007883 8.6e-58 228.4 224 55.4
PSO421G0497 Papaver somniferum HOM05D006406 ORTHO05D007883 2.1e-48 197.2 384 36.2
SMO198G0100 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 1.5e-46 191.0 197 49.2
arahy.Tifrunner.gnm1.ann1.AST3BR Arachis hypogaea HOM05D006406 ORTHO05D007883 1.9e-44 184.1 175 52.0
AagrBONN_evm.TU.Sc2ySwM_362.2555 Anthoceros agrestis HOM05D006406 ORTHO05D007883 4.3e-33 146.4 112 60.7
MSTRG.16393 Avicennia marina HOM05D006406 ORTHO05D007883 2.0e-30 137.5 188 44.7
FAN02G3513 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.8e-26 124.4 173 46.2
BcaB07g32734 Brassica carinata HOM05D006406 ORTHO05D007883 2.3e-18 97.4 148 43.2
Lsat_1_v5_gn_5_186620 Lactuca sativa HOM05D006406 ORTHO05D007883 1.4e-12 78.2 163 35.0
AL3G41450 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 6.7e-10 69.3 41 68.3
Aqoxy601s001 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 1.7e-08 64.7 34 79.4
Cre09.g392700 Chlamydomonas reinhardtii HOM05D006406 ORTHO05D007883 1.7e-08 64.7 101 39.6
SMO172G0225 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 2.0e-06 57.8 64 45.3


User provided reference genes

Program Settings