Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25820 Nelumbo nucifera HOM05D005667 ORTHO05D007299 3.7e-232 807.7 384 100.0
TAR627G0762 Trochodendron aralioides HOM05D005667 ORTHO05D007299 9.6e-188 660.2 384 80.7
TAR365G0445 Trochodendron aralioides HOM05D005667 ORTHO05D007299 3.6e-187 658.3 384 80.7
Dinv33042 Davidia involucrata HOM05D005667 ORTHO05D007299 1.9e-175 619.4 385 74.8
QL12p027280 Quercus lobata HOM05D005667 ORTHO05D007299 8.1e-171 604.0 391 71.9
Atru.chr5.1169 Acer truncatum HOM05D005667 ORTHO05D007299 2.4e-170 602.4 384 74.2
Actinidia32226 Actinidia chinensis HOM05D005667 ORTHO05D007299 3.8e-168 595.1 385 71.7
Cfa005935 Carpinus fangiana HOM05D005667 ORTHO05D007299 6.0e-166 587.8 385 71.9
Glyma.03G213700 Glycine max HOM05D005667 ORTHO05D007299 1.8e-165 586.3 385 71.4
CANSAT25G0856 Cannabis sativa HOM05D005667 ORTHO05D007299 5.1e-165 584.7 383 71.3
vmacro14998 Vaccinium macrocarpon HOM05D005667 ORTHO05D007299 5.1e-165 584.7 389 70.7
TWI23G0451 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 1.5e-164 583.2 383 71.5
VMungo1383G3519 Vigna mungo HOM05D005667 ORTHO05D007299 2.4e-162 575.9 383 70.0
Glyma.19G210500 Glycine max HOM05D005667 ORTHO05D007299 9.0e-162 573.9 385 69.9
Haze_04910 Corylus avellana HOM05D005667 ORTHO05D007299 1.5e-161 573.2 416 67.1
Hma1.2p1_0209F.1_g088490 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 2.6e-161 572.4 385 71.9
MD03G1286100 Malus domestica HOM05D005667 ORTHO05D007299 2.6e-161 572.4 384 70.8
TWI59G1070 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 2.6e-161 572.4 387 70.3
MD11G1306000 Malus domestica HOM05D005667 ORTHO05D007299 5.8e-161 571.2 384 70.1
arahy.Tifrunner.gnm1.ann1.P0XQ2X Arachis hypogaea HOM05D005667 ORTHO05D007299 7.6e-161 570.9 386 69.4
Psat3g021960 Pisum sativum HOM05D005667 ORTHO05D007299 1.0e-160 570.5 391 69.1
CsaV3_4G000700 Cucumis sativus L. HOM05D005667 ORTHO05D007299 1.7e-160 569.7 389 68.6
Lj1g0013419 Lotus japonicus HOM05D005667 ORTHO05D007299 3.8e-160 568.5 387 69.3
QL12p026655 Quercus lobata HOM05D005667 ORTHO05D007299 3.8e-160 568.5 371 71.7
MELO3C017966.2 Cucumis melo HOM05D005667 ORTHO05D007299 4.9e-160 568.2 389 68.1
Lalb_Chr04g0259821 Lupinus albus HOM05D005667 ORTHO05D007299 6.5e-160 567.8 388 69.8
Phvul.001G206300 Phaseolus vulgaris HOM05D005667 ORTHO05D007299 6.5e-160 567.8 383 69.5
Aqoxy2G02973 Aquilegia oxysepala HOM05D005667 ORTHO05D007299 1.1e-159 567.0 377 71.9
Medtr7g108870 Medicago truncatula HOM05D005667 ORTHO05D007299 3.2e-159 565.5 384 70.3
Medtr8g058590 Medicago truncatula HOM05D005667 ORTHO05D007299 3.2e-159 565.5 384 70.3
arahy.Tifrunner.gnm1.ann1.AQSE8X Arachis hypogaea HOM05D005667 ORTHO05D007299 4.2e-159 565.1 386 69.2
Ca_09151_v3 Cicer arietinum L. HOM05D005667 ORTHO05D007299 7.1e-159 564.3 392 68.1
CiPaw.07G107100 Carya illinoinensis HOM05D005667 ORTHO05D007299 1.2e-158 563.5 385 68.3
Duzib138G1280 Durio zibethinus HOM05D005667 ORTHO05D007299 1.6e-158 563.1 374 71.4
Lalb_Chr18g0047071 Lupinus albus HOM05D005667 ORTHO05D007299 1.6e-158 563.1 388 68.8
PSO210G4429 Papaver somniferum HOM05D005667 ORTHO05D007299 3.5e-158 562.0 390 70.0
Ciclev10020175m.g Citrus clementina HOM05D005667 ORTHO05D007299 6.0e-158 561.2 443 62.8
COL.COLO4_23365 Corchorus olitorius HOM05D005667 ORTHO05D007299 1.0e-157 560.5 385 69.6
DCAR_005798 Daucus carota HOM05D005667 ORTHO05D007299 2.3e-157 559.3 386 68.9
TPR.G9636 Trifolium pratense HOM05D005667 ORTHO05D007299 3.0e-157 558.9 389 69.4
Hund18138 Selenicereus undatus HOM05D005667 ORTHO05D007299 5.1e-157 558.1 387 68.5
PSO170G6061 Papaver somniferum HOM05D005667 ORTHO05D007299 2.5e-156 555.8 372 72.6
Thecc.01G298400 Theobroma cacao HOM05D005667 ORTHO05D007299 5.7e-156 554.7 385 68.8
Sed0014922 Sechium edule HOM05D005667 ORTHO05D007299 1.3e-155 553.5 377 67.6
SGA_v2.0_scaffold2G01401 Striga asiatica HOM05D005667 ORTHO05D007299 2.4e-154 549.3 384 68.0
FvH4_2g25530 Fragaria vesca HOM05D005667 ORTHO05D007299 5.3e-154 548.1 376 70.2
Nitab4.5_0002469g0040 Nicotiana tabacum HOM05D005667 ORTHO05D007299 1.2e-153 547.0 386 68.1
CSS0019258 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 1.7e-152 543.1 384 68.8
Sopen09g029820 Solanum pennellii HOM05D005667 ORTHO05D007299 3.8e-152 542.0 371 70.1
Solyc09g075000.3 Solanum lycopersicum HOM05D005667 ORTHO05D007299 6.5e-152 541.2 371 69.8
Prupe.8G259400 Prunus persica HOM05D005667 ORTHO05D007299 1.9e-151 539.7 343 74.9
HanXRQChr04g0118041 Helianthus annuus HOM05D005667 ORTHO05D007299 4.2e-151 538.5 386 67.4
ATR0796G332 Amborella trichopoda HOM05D005667 ORTHO05D007299 1.2e-150 537.0 387 67.4
Eucgr.K03468 Eucalyptus grandis HOM05D005667 ORTHO05D007299 7.9e-150 534.3 380 67.6
PGSC0003DMG400011397 Solanum tuberosum HOM05D005667 ORTHO05D007299 1.3e-149 533.5 385 67.8
MSTRG.21625 Avicennia marina HOM05D005667 ORTHO05D007299 3.0e-149 532.3 385 66.5
GSVIVG01027987001 Vitis vinifera HOM05D005667 ORTHO05D007299 3.9e-149 531.9 329 76.0
AT2G47790 Arabidopsis thaliana HOM05D005667 ORTHO05D007299 6.7e-149 531.2 390 66.9
Sp4g29720 Schrenkiella parvula HOM05D005667 ORTHO05D007299 1.5e-148 530.0 390 66.4
Sabra02G0153700 Salix brachista HOM05D005667 ORTHO05D007299 3.3e-148 528.9 413 64.9
CDE08G0318 Ceratophyllum demersum HOM05D005667 ORTHO05D007299 4.3e-148 528.5 373 67.0
THA.LOC104817511 Tarenaya hassleriana HOM05D005667 ORTHO05D007299 5.7e-148 528.1 382 66.5
Potri.002G205600 Populus trichocarpa HOM05D005667 ORTHO05D007299 2.2e-147 526.2 386 67.6
Ah.08g213150 Amaranthus hybridus HOM05D005667 ORTHO05D007299 8.2e-147 524.2 390 63.6
AL4G47370 Arabidopsis lyrata HOM05D005667 ORTHO05D007299 8.2e-147 524.2 388 66.2
Manes.01G217700 Manihot esculenta HOM05D005667 ORTHO05D007299 1.5e-145 520.0 384 66.7
FAN20G0834 Fragaria x ananassa HOM05D005667 ORTHO05D007299 3.4e-145 518.8 391 65.7
Sc05g0004030 Simmondsia chinensis HOM05D005667 ORTHO05D007299 3.4e-145 518.8 375 66.7
Cc01_g20730 Coffea canephora HOM05D005667 ORTHO05D007299 1.0e-144 517.3 438 58.7
Potri.014G130600 Populus trichocarpa HOM05D005667 ORTHO05D007299 8.5e-144 514.2 384 66.4
Lj1C26T7 Lonicera japonica HOM05D005667 ORTHO05D007299 1.9e-143 513.1 323 74.3
SalBow3G0511 Salvia bowleyana HOM05D005667 ORTHO05D007299 1.9e-143 513.1 370 64.9
Carub.0004s3050 Capsella rubella HOM05D005667 ORTHO05D007299 7.2e-143 511.1 388 65.2
Migut.D00204 Erythranthe guttata HOM05D005667 ORTHO05D007299 3.6e-142 508.8 393 64.6
Nitab4.5_0005515g0060 Nicotiana tabacum HOM05D005667 ORTHO05D007299 6.1e-142 508.1 387 64.9
ClCG10G010830 Citrullus lanatus HOM05D005667 ORTHO05D007299 8.8e-141 504.2 389 63.0
Lsat_1_v5_gn_8_53441 Lactuca sativa HOM05D005667 ORTHO05D007299 1.5e-140 503.4 382 65.7
Rhsim01G0284200 Rhododendron simsii HOM05D005667 ORTHO05D007299 4.3e-140 501.9 390 62.6
CARHR143160 Cardamine hirsuta HOM05D005667 ORTHO05D007299 1.3e-139 500.4 390 64.1
Thhalv10001494m.g Eutrema salsugineum HOM05D005667 ORTHO05D007299 3.7e-139 498.8 386 64.2
HPP92_027132 Vanilla planifolia HOM05D005667 ORTHO05D007299 3.7e-139 498.8 368 65.5
Peaxi162Scf00001g00492 Petunia axillaris HOM05D005667 ORTHO05D007299 4.1e-138 495.4 341 68.0
Hma1.2p1_0209F.1_g088500 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 9.1e-138 494.2 427 60.0
EL10Ac7g17451 Beta vulgaris HOM05D005667 ORTHO05D007299 1.5e-137 493.4 383 61.1
CSS0024566 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 5.0e-136 488.4 385 62.3
CSS0050073 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 8.5e-136 487.6 385 62.3
AUR62008656 Chenopodium quinoa HOM05D005667 ORTHO05D007299 5.5e-135 485.0 385 60.8
AUR62033112 Chenopodium quinoa HOM05D005667 ORTHO05D007299 7.2e-135 484.6 386 60.1
Sabra14G0097200 Salix brachista HOM05D005667 ORTHO05D007299 2.7e-134 482.6 384 63.5
Aa31LG1G29130 Aethionema arabicum HOM05D005667 ORTHO05D007299 1.4e-133 480.3 393 60.8
Actinidia24829 Actinidia chinensis HOM05D005667 ORTHO05D007299 8.8e-133 477.6 386 61.1
PGR044G1684 Punica granatum HOM05D005667 ORTHO05D007299 3.7e-131 472.2 388 59.5
BcaB06g29498 Brassica carinata HOM05D005667 ORTHO05D007299 2.6e-129 466.1 399 59.4
Gohir.D12G135100 Gossypium hirsutum HOM05D005667 ORTHO05D007299 3.5e-129 465.7 386 60.1
A04p35070 Brassica napus HOM05D005667 ORTHO05D007299 4.2e-127 458.8 374 62.0
C04p72980 Brassica napus HOM05D005667 ORTHO05D007299 5.5e-127 458.4 388 59.5
Gorai.008G146100 Gossypium raimondii HOM05D005667 ORTHO05D007299 2.7e-126 456.1 386 59.3
BolC4t28779H Brassica oleracea HOM05D005667 ORTHO05D007299 3.6e-126 455.7 390 59.7
BraA04t18943Z Brassica rapa HOM05D005667 ORTHO05D007299 3.6e-126 455.7 375 61.9
Gohir.A12G131200 Gossypium hirsutum HOM05D005667 ORTHO05D007299 3.6e-126 455.7 386 58.8
unitig_0.g1174 Utricularia gibba HOM05D005667 ORTHO05D007299 4.7e-126 455.3 417 55.2
ECA236G1571 Erigeron canadensis HOM05D005667 ORTHO05D007299 6.1e-126 454.9 340 65.3
SEGI_23788 Sequoiadendron giganteum HOM05D005667 ORTHO05D007299 1.1e-124 450.7 396 55.8
BcaC02g06992 Brassica carinata HOM05D005667 ORTHO05D007299 2.2e-123 446.4 389 58.6
SHI15190 Sapria himalayana HOM05D005667 ORTHO05D007299 1.8e-122 443.4 393 58.8
Sc05g0001380 Simmondsia chinensis HOM05D005667 ORTHO05D007299 2.2e-115 419.9 301 65.8
Dinv19706 Davidia involucrata HOM05D005667 ORTHO05D007299 4.1e-106 389.0 263 71.1
Cpa.g.sc9.222 Carica papaya HOM05D005667 ORTHO05D007299 9.5e-103 377.9 272 67.6
Medtr8g058557 Medicago truncatula HOM05D005667 ORTHO05D007299 1.5e-95 354.0 232 72.0
Nn3g21456 Nelumbo nucifera HOM05D005667 ORTHO05D007299 4.0e-93 345.9 316 58.9
Mapoly0153s0027 Marchantia polymorpha HOM05D005667 ORTHO05D007299 8.9e-93 344.7 380 46.6
Pp3c11_14960 Physcomitrium patens HOM05D005667 ORTHO05D007299 4.1e-90 335.9 381 45.7
SMO329G0065 Selaginella moellendorffii HOM05D005667 ORTHO05D007299 5.4e-90 335.5 350 49.1
BcaB06g29495 Brassica carinata HOM05D005667 ORTHO05D007299 1.2e-89 334.3 278 59.0
Pp3c2_26100 Physcomitrium patens HOM05D005667 ORTHO05D007299 2.3e-88 330.1 376 46.3
HPP92_021590 Vanilla planifolia HOM05D005667 ORTHO05D007299 2.3e-85 320.1 251 62.5
RcHm_v2.0_Chr6g0293741 Rosa chinensis HOM05D005667 ORTHO05D007299 5.8e-76 288.9 200 69.5
Pp3c11_15090 Physcomitrium patens HOM05D005667 ORTHO05D007299 2.7e-73 280.0 297 46.5
Zm00001eb157470 Zea mays HOM05D005667 ORTHO05D007299 2.1e-70 270.4 174 69.0
AagrBONN_evm.TU.Sc2ySwM_344.2785 Anthoceros agrestis HOM05D005667 ORTHO05D007299 1.5e-63 247.7 233 50.6
Actinidia21054 Actinidia chinensis HOM05D005667 ORTHO05D007299 2.5e-63 246.9 152 73.0
Oeu011452.2 Olea europaea HOM05D005667 ORTHO05D007299 7.3e-63 245.4 167 70.1
Os12g0294100 Oryza sativa ssp. japonica HOM05D005667 ORTHO05D007299 1.1e-58 231.5 194 60.8
Cre03.g178050 Chlamydomonas reinhardtii HOM05D005667 ORTHO05D007299 1.3e-51 208.0 359 35.1
RcHm_v2.0_Chr6g0293751 Rosa chinensis HOM05D005667 ORTHO05D007299 4.5e-36 156.4 132 61.4
PRCOL_00003266 Prasinoderma coloniale HOM05D005667 ORTHO05D007299 1.7e-35 154.5 364 31.0
MCO09G319 Micromonas commoda HOM05D005667 ORTHO05D007299 8.5e-35 152.1 344 32.3
BcaC02g06993 Brassica carinata HOM05D005667 ORTHO05D007299 1.1e-31 141.7 112 64.3
CBR_g34279 Chara braunii HOM05D005667 ORTHO05D007299 2.2e-30 137.5 164 43.9
Migut.D00125 Erythranthe guttata HOM05D005667 ORTHO05D007299 2.1e-25 120.9 177 40.7
Migut.G00109 Erythranthe guttata HOM05D005667 ORTHO05D007299 4.8e-22 109.8 171 38.0
CBR_g31107 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-15 87.8 184 31.0
CBR_g31109 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-11 73.2 69 44.9
Actinidia13473 Actinidia chinensis HOM05D005667 ORTHO05D000474 1.9e-10 71.2 78 51.3
Prupe.8G259600 Prunus persica HOM05D005667 ORTHO05D007299 8.2e-06 55.8 39 69.2


User provided reference genes

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