Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.9e-109 399.1 186 100.0
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.5e-45 186.8 135 65.2
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 3.8e-33 145.6 170 46.5
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 6.5e-33 144.8 99 63.6
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.9e-32 143.3 138 47.8
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 1.6e-31 140.2 98 57.1
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 1.6e-31 140.2 132 53.0
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 2.7e-31 139.4 117 49.6
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 2.7e-31 139.4 130 46.9
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 8.0e-31 137.9 98 58.2
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.0e-31 137.9 148 47.3
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.0e-30 137.5 148 47.3
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 1.4e-30 137.1 108 56.5
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 1.4e-30 137.1 99 59.6
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 1.8e-30 136.7 99 58.6
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 1.8e-30 136.7 101 57.4
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 1.8e-30 136.7 167 43.7
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 1.8e-30 136.7 114 53.5
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 1.8e-30 136.7 197 39.1
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 2.3e-30 136.3 145 48.3
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 6.8e-30 134.8 116 51.7
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.8e-30 134.8 116 51.7
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 6.8e-30 134.8 126 51.6
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 6.8e-30 134.8 131 45.8
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 8.8e-30 134.4 153 43.1
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 1.2e-29 134.0 100 53.0
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.0e-29 133.3 126 51.6
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 4.4e-29 132.1 134 50.7
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 4.4e-29 132.1 99 56.6
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 5.7e-29 131.7 99 56.6
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 7.5e-29 131.3 133 49.6
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 7.5e-29 131.3 105 56.2
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 7.5e-29 131.3 138 50.0
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 7.5e-29 131.3 145 44.1
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 7.5e-29 131.3 101 56.4
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 9.8e-29 131.0 98 55.1
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 9.8e-29 131.0 99 54.5
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 9.8e-29 131.0 137 45.3
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.3e-28 130.6 98 56.1
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.3e-28 130.6 112 51.8
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 1.7e-28 130.2 140 47.9
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 1.7e-28 130.2 138 44.9
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 2.2e-28 129.8 119 50.4
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 2.8e-28 129.4 94 58.5
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 2.8e-28 129.4 105 55.2
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 2.8e-28 129.4 141 42.6
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 3.7e-28 129.0 138 45.7
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.7e-28 129.0 141 42.6
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 3.7e-28 129.0 98 60.2
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 4.8e-28 128.6 141 42.6
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 6.3e-28 128.3 135 40.7
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 8.3e-28 127.9 98 54.1
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 1.1e-27 127.5 173 38.7
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 1.4e-27 127.1 134 49.3
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 1.4e-27 127.1 147 44.2
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 1.4e-27 127.1 135 45.9
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 2.4e-27 126.3 124 50.0
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 2.4e-27 126.3 99 52.5
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 2.4e-27 126.3 170 38.8
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 2.4e-27 126.3 128 52.3
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 2.4e-27 126.3 98 55.1
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 3.1e-27 125.9 167 38.9
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 3.1e-27 125.9 147 42.9
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 4.1e-27 125.6 114 51.8
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 5.4e-27 125.2 135 47.4
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 5.4e-27 125.2 145 43.4
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 5.4e-27 125.2 102 52.9
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 7.0e-27 124.8 100 54.0
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 7.0e-27 124.8 140 44.3
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 7.0e-27 124.8 99 55.6
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 9.1e-27 124.4 129 48.1
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 9.1e-27 124.4 129 48.1
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 9.1e-27 124.4 96 57.3
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 9.1e-27 124.4 129 48.1
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 9.1e-27 124.4 99 50.5
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.2e-26 124.0 110 53.6
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 1.2e-26 124.0 93 58.1
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 1.6e-26 123.6 96 57.3
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.0e-26 123.2 104 55.8
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 2.0e-26 123.2 109 45.9
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 2.7e-26 122.9 132 48.5
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 2.7e-26 122.9 135 45.2
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 2.7e-26 122.9 113 49.6
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 3.5e-26 122.5 106 55.7
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 3.5e-26 122.5 120 45.0
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 4.5e-26 122.1 99 48.5
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 4.5e-26 122.1 99 48.5
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 4.5e-26 122.1 98 57.1
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 5.9e-26 121.7 106 55.7
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 5.9e-26 121.7 106 54.7
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 5.9e-26 121.7 92 56.5
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 5.9e-26 121.7 96 56.2
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.0e-25 120.9 96 55.2
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.0e-25 120.9 98 52.0
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.0e-25 120.9 121 51.2
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 1.0e-25 120.9 120 42.5
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 1.3e-25 120.6 106 54.7
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 1.3e-25 120.6 124 49.2
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 1.7e-25 120.2 90 54.4
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 2.9e-25 119.4 132 46.2
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 3.8e-25 119.0 99 48.5
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 6.6e-25 118.2 126 44.4
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 6.6e-25 118.2 94 50.0
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 6.6e-25 118.2 101 52.5
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 6.6e-25 118.2 93 54.8
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 6.6e-25 118.2 93 54.8
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 8.6e-25 117.9 99 47.5
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 8.6e-25 117.9 99 47.5
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 8.6e-25 117.9 93 54.8
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 8.6e-25 117.9 137 43.8
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.1e-24 117.5 99 49.5
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.1e-24 117.5 98 51.0
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.1e-24 117.5 133 45.1
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 1.1e-24 117.5 98 53.1
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 1.5e-24 117.1 99 47.5
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 1.5e-24 117.1 99 47.5
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 1.9e-24 116.7 110 48.2
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.9e-24 116.7 101 51.5
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.5e-24 116.3 91 52.7
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 3.3e-24 115.9 143 42.7
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 3.3e-24 115.9 122 46.7
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 3.3e-24 115.9 112 50.0
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 4.2e-24 115.5 99 46.5
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 4.2e-24 115.5 126 46.0
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 4.2e-24 115.5 99 52.5
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 5.5e-24 115.2 89 53.9
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 5.5e-24 115.2 93 53.8
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 7.2e-24 114.8 102 50.0
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 7.2e-24 114.8 110 50.0
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 9.5e-24 114.4 109 51.4
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 9.5e-24 114.4 138 42.0
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 9.5e-24 114.4 116 46.6
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 1.2e-23 114.0 87 55.2
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 1.6e-23 113.6 83 61.4
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.6e-23 113.6 97 49.5
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 1.6e-23 113.6 125 48.0
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 2.1e-23 113.2 113 49.6
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.1e-23 113.2 113 49.6
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.8e-23 112.8 125 48.8
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 2.8e-23 112.8 101 51.5
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 6.1e-23 111.7 117 48.7
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 6.1e-23 111.7 100 50.0
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 8.0e-23 111.3 109 49.5
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 8.0e-23 111.3 109 49.5
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.4e-22 110.5 88 53.4
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 1.4e-22 110.5 99 46.5
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.8e-22 110.2 107 49.5
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 2.3e-22 109.8 96 54.2
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 4.0e-22 109.0 98 51.0
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 4.0e-22 109.0 105 45.7
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 4.0e-22 109.0 100 48.0
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 5.2e-22 108.6 112 46.4
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 5.2e-22 108.6 93 52.7
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 5.2e-22 108.6 101 53.5
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 6.8e-22 108.2 93 48.4
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.2e-21 107.5 92 53.3
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.5e-21 107.1 124 44.4
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.3e-20 104.0 129 41.9
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 4.9e-20 102.1 90 48.9
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 6.3e-20 101.7 88 53.4
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 6.3e-20 101.7 123 39.8
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 6.3e-20 101.7 104 45.2
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 8.3e-20 101.3 152 40.1
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.8e-19 100.1 109 44.0
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.8e-19 100.1 125 41.6
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 9.2e-19 97.8 96 53.1
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.0e-18 96.7 82 54.9
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 2.0e-18 96.7 89 50.6
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 2.3e-17 93.2 72 52.8
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 5.6e-16 88.6 110 40.9
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 6.1e-15 85.1 105 38.1
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 1.8e-14 83.6 60 58.3
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 6.8e-14 81.6 73 50.7
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 8.9e-14 81.3 59 61.0
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 3.7e-12 75.9 105 36.2
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 1.7e-09 67.0 50 54.0
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 3.9e-09 65.9 66 45.5
ATR1127G131 Amborella trichopoda HOM05D008739 ORTHO05D010871 3.3e-08 62.8 110 33.6
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 4.3e-08 62.4 68 41.2
Actinidia31640 Actinidia chinensis HOM05D008739 ORTHO05D010871 9.5e-08 61.2 68 36.8
Cpa.g.sc2.284 Carica papaya HOM05D008739 ORTHO05D010871 2.8e-07 59.7 129 33.3
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 2.8e-07 59.7 68 35.3
DCAR_009469 Daucus carota HOM05D008739 ORTHO05D010871 3.6e-07 59.3 125 29.6
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 1.4e-06 57.4 82 36.6
TPR.G32167 Trifolium pratense HOM05D002444 ORTHO05D004748 2.3e-06 56.6 39 61.5
Peaxi162Scf00131g00137 Petunia axillaris HOM05D008739 ORTHO05D010871 6.8e-06 55.1 66 39.4


User provided reference genes

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