Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25590 Nelumbo nucifera HOM05D001728 ORTHO05D004174 1.8e-59 232.3 109 100.0
Nn3g21703 Nelumbo nucifera HOM05D001728 ORTHO05D004174 2.0e-21 105.9 81 66.7
TAR362G0220 Trochodendron aralioides HOM05D001728 ORTHO05D004174 4.1e-19 98.2 77 62.3
MBI19_g07231_MAGBIO Magnolia biondii HOM05D001728 ORTHO05D004174 7.8e-18 94.0 79 59.5
Duzib151G0474 Durio zibethinus HOM05D001728 ORTHO05D004174 5.0e-17 91.3 78 56.4
Gohir.D10G178500 Gossypium hirsutum HOM05D001728 ORTHO05D004174 5.0e-17 91.3 81 55.6
Gorai.011G199600 Gossypium raimondii HOM05D001728 ORTHO05D004174 5.0e-17 91.3 81 55.6
Duzib052G1178 Durio zibethinus HOM05D001728 ORTHO05D004174 1.5e-16 89.7 78 56.4
Gohir.A10G171400 Gossypium hirsutum HOM05D001728 ORTHO05D004174 3.3e-16 88.6 81 54.3
Dinv15187 Davidia involucrata HOM05D001728 ORTHO05D004174 4.3e-16 88.2 75 58.7
RcHm_v2.0_Chr4g0424811 Rosa chinensis HOM05D001728 ORTHO05D004174 4.3e-16 88.2 76 56.6
COL.COLO4_34632 Corchorus olitorius HOM05D001728 ORTHO05D004174 5.6e-16 87.8 83 51.8
QL06p011803 Quercus lobata HOM05D001728 ORTHO05D004174 7.3e-16 87.4 80 56.2
VMungo0540G0586 Vigna mungo HOM05D001728 ORTHO05D004174 7.3e-16 87.4 79 57.0
FAN07G1735 Fragaria x ananassa HOM05D001728 ORTHO05D004174 1.2e-15 86.7 76 55.3
Nn2g11990 Nelumbo nucifera HOM05D001728 ORTHO05D004174 1.6e-15 86.3 69 65.2
Phvul.006G117400 Phaseolus vulgaris HOM05D001728 ORTHO05D004174 1.6e-15 86.3 79 55.7
Glyma.15G141200 Glycine max HOM05D001728 ORTHO05D004174 2.1e-15 85.9 79 55.7
arahy.Tifrunner.gnm1.ann1.6P8AS9 Arachis hypogaea HOM05D001728 ORTHO05D004174 2.8e-15 85.5 80 58.8
arahy.Tifrunner.gnm1.ann1.MYV2K5 Arachis hypogaea HOM05D001728 ORTHO05D004174 2.8e-15 85.5 80 58.8
Manes.03G203400 Manihot esculenta HOM05D001728 ORTHO05D004174 3.6e-15 85.1 81 53.1
Thecc.04G299100 Theobroma cacao HOM05D001728 ORTHO05D004174 4.7e-15 84.7 78 53.8
FvH4_4g19560 Fragaria vesca HOM05D001728 ORTHO05D004174 1.0e-14 83.6 76 53.9
FAN12G2115 Fragaria x ananassa HOM05D001728 ORTHO05D004174 1.0e-14 83.6 76 53.9
PSO210G3088 Papaver somniferum HOM05D001728 ORTHO05D004174 1.4e-14 83.2 80 55.0
PSO761G0142 Papaver somniferum HOM05D001728 ORTHO05D004174 1.4e-14 83.2 80 55.0
Aqoxy2G02747 Aquilegia oxysepala HOM05D001728 ORTHO05D004174 1.8e-14 82.8 78 51.3
Lj6g0011500 Lotus japonicus HOM05D001728 ORTHO05D004174 6.8e-14 80.9 74 56.8
TWI09G0044 Tripterygium wilfordii HOM05D001728 ORTHO05D004174 6.8e-14 80.9 79 53.2
Hma1.2p1_0013F.1_g008660 Hydrangea macrophylla HOM05D001728 ORTHO05D004174 8.9e-14 80.5 74 55.4
Cfa015326 Carpinus fangiana HOM05D001728 ORTHO05D004174 1.2e-13 80.1 76 59.2
Dinv33122 Davidia involucrata HOM05D001728 ORTHO05D004174 1.5e-13 79.7 81 58.0
GSVIVG01035008001 Vitis vinifera HOM05D001728 ORTHO05D004174 1.5e-13 79.7 74 54.1
Haze_01289 Corylus avellana HOM05D001728 ORTHO05D004174 2.0e-13 79.3 77 58.4
Glyma.09G036300 Glycine max HOM05D001728 ORTHO05D004174 2.0e-13 79.3 79 50.6
Ciclev10005518m.g Citrus clementina HOM05D001728 ORTHO05D004174 2.6e-13 79.0 76 57.9
Glyma.17G032800 Glycine max HOM05D001728 ORTHO05D004174 3.4e-13 78.6 80 51.2
Actinidia13363 Actinidia chinensis HOM05D001728 ORTHO05D004174 4.4e-13 78.2 74 51.4
Cpa.g.sc9.71 Carica papaya HOM05D001728 ORTHO05D004174 5.8e-13 77.8 76 60.5
Glyma.07G240600 Glycine max HOM05D001728 ORTHO05D004174 5.8e-13 77.8 78 50.0
Phvul.003G113800 Phaseolus vulgaris HOM05D001728 ORTHO05D004174 9.8e-13 77.0 75 52.0
Manes.15G005200 Manihot esculenta HOM05D001728 ORTHO05D004174 1.7e-12 76.3 74 54.1
Prupe.1G119000 Prunus persica HOM05D001728 ORTHO05D004174 1.7e-12 76.3 80 52.5
TWI73G0756 Tripterygium wilfordii HOM05D001728 ORTHO05D004174 1.7e-12 76.3 77 53.2
Psat4g024160 Pisum sativum HOM05D001728 ORTHO05D004174 2.9e-12 75.5 77 54.5
Nn2g12682 Nelumbo nucifera HOM05D001728 ORTHO05D004174 3.7e-12 75.1 55 69.1
Actinidia14261 Actinidia chinensis HOM05D001728 ORTHO05D004174 4.9e-12 74.7 74 51.4
Dinv44292 Davidia involucrata HOM05D001728 ORTHO05D004174 4.9e-12 74.7 75 54.7
VMungo1215G0747 Vigna mungo HOM05D001728 ORTHO05D004174 4.9e-12 74.7 75 52.0
CSS0047464 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 6.4e-12 74.3 75 54.7
MELO3C006710.2 Cucumis melo HOM05D001728 ORTHO05D004174 6.4e-12 74.3 75 48.0
Lj4g0019830 Lotus japonicus HOM05D001728 ORTHO05D004174 6.4e-12 74.3 77 50.6
Atru.chr4.3016 Acer truncatum HOM05D001728 ORTHO05D004174 8.3e-12 73.9 78 48.7
Potri.010G143900 Populus trichocarpa HOM05D001728 ORTHO05D004174 1.1e-11 73.6 81 51.9
Sabra08G0080000 Salix brachista HOM05D001728 ORTHO05D004174 1.1e-11 73.6 63 57.1
Lj6C689T11 Lonicera japonica HOM05D001728 ORTHO05D004174 1.4e-11 73.2 79 51.9
CsaV3_3G015120 Cucumis sativus L. HOM05D001728 ORTHO05D004174 1.9e-11 72.8 75 48.0
Lalb_Chr18g0058741 Lupinus albus HOM05D001728 ORTHO05D004174 1.9e-11 72.8 78 53.8
PSO170G6117 Papaver somniferum HOM05D001728 ORTHO05D004174 1.9e-11 72.8 83 45.8
TWI53G1778 Tripterygium wilfordii HOM05D001728 ORTHO05D004174 1.9e-11 72.8 77 51.9
ClCG05G006510 Citrullus lanatus HOM05D001728 ORTHO05D004174 2.4e-11 72.4 81 46.9
PSO357G0012 Papaver somniferum HOM05D001728 ORTHO05D004174 2.4e-11 72.4 83 45.8
arahy.Tifrunner.gnm1.ann1.2RYD9Q Arachis hypogaea HOM05D001728 ORTHO05D004174 4.1e-11 71.6 79 50.6
arahy.Tifrunner.gnm1.ann1.C412JQ Arachis hypogaea HOM05D001728 ORTHO05D004174 5.4e-11 71.2 79 50.6
MD13G1155700 Malus domestica HOM05D001728 ORTHO05D004174 5.4e-11 71.2 81 50.6
Nn8g41281 Nelumbo nucifera HOM05D001728 ORTHO05D004174 5.4e-11 71.2 47 74.5
CSS0014848 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 7.0e-11 70.9 75 53.3
Sed0012381 Sechium edule HOM05D001728 ORTHO05D004174 7.0e-11 70.9 75 45.3
Sabra10G0111100 Salix brachista HOM05D001728 ORTHO05D004174 9.2e-11 70.5 63 58.7
TPR.G16843 Trifolium pratense HOM05D001728 ORTHO05D004174 9.2e-11 70.5 77 50.6
CSS0020178 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 1.2e-10 70.1 74 50.0
CANSAT78G2180 Cannabis sativa HOM05D001728 ORTHO05D004174 1.2e-10 70.1 81 50.6
Cc03_g00930 Coffea canephora HOM05D001728 ORTHO05D004174 1.2e-10 70.1 77 50.6
TPR.G27262 Trifolium pratense HOM05D001728 ORTHO05D004174 1.2e-10 70.1 75 46.7
DCAR_027001 Daucus carota HOM05D001728 ORTHO05D004174 2.0e-10 69.3 74 48.6
Gohir.D09G235700 Gossypium hirsutum HOM05D001728 ORTHO05D004174 2.0e-10 69.3 84 48.8
Gorai.006G258700 Gossypium raimondii HOM05D001728 ORTHO05D004174 2.0e-10 69.3 84 48.8
CiPaw.01G139100 Carya illinoinensis HOM05D001728 ORTHO05D004174 3.5e-10 68.6 79 49.4
ATR0796G190 Amborella trichopoda HOM05D001728 ORTHO05D004174 4.6e-10 68.2 94 40.4
AL7G38800 Arabidopsis lyrata HOM05D001728 ORTHO05D004174 4.6e-10 68.2 78 39.7
CiPaw.02G075700 Carya illinoinensis HOM05D001728 ORTHO05D004174 6.0e-10 67.8 75 49.3
Medtr4g121960 Medicago truncatula HOM05D001728 ORTHO05D004174 6.0e-10 67.8 77 53.2
Potri.008G106300 Populus trichocarpa HOM05D001728 ORTHO05D004174 6.0e-10 67.8 63 55.6
Rhsim02G0004600 Rhododendron simsii HOM05D001728 ORTHO05D004174 7.8e-10 67.4 74 50.0
Hund11964 Selenicereus undatus HOM05D001728 ORTHO05D004174 7.8e-10 67.4 81 48.1
Nn3g19516 Nelumbo nucifera HOM05D001728 ORTHO05D004174 1.0e-09 67.0 33 90.9
PGR004G2896 Punica granatum HOM05D001728 ORTHO05D004174 1.7e-09 66.2 78 43.6
Lalb_Chr15g0089241 Lupinus albus HOM05D001728 ORTHO05D004174 3.0e-09 65.5 78 51.3
MD16G1155400 Malus domestica HOM05D001728 ORTHO05D004174 3.0e-09 65.5 81 46.9
Solyc12g099310.2 Solanum lycopersicum HOM05D001728 ORTHO05D004174 3.0e-09 65.5 63 52.4
Sopen12g033990 Solanum pennellii HOM05D001728 ORTHO05D004174 3.0e-09 65.5 63 52.4
Hund03118 Selenicereus undatus HOM05D001728 ORTHO05D004174 3.9e-09 65.1 78 51.3
MSTRG.24818 Avicennia marina HOM05D001728 ORTHO05D004174 6.6e-09 64.3 69 52.2
AUR62016122 Chenopodium quinoa HOM05D001728 ORTHO05D004174 6.6e-09 64.3 76 48.7
Nitab4.5_0002150g0220 Nicotiana tabacum HOM05D001728 ORTHO05D004174 8.6e-09 63.9 73 45.2
Nitab4.5_0013613g0010 Nicotiana tabacum HOM05D001728 ORTHO05D004174 1.5e-08 63.2 60 55.0
SalBow5G2437 Salvia bowleyana HOM05D001728 ORTHO05D004174 1.9e-08 62.8 74 47.3
Sed0009760 Sechium edule HOM05D001728 ORTHO05D004174 1.9e-08 62.8 74 44.6
Zm00001eb014740 Zea mays HOM05D001728 ORTHO05D004174 1.9e-08 62.8 42 69.0
DCAR_030467 Daucus carota HOM05D001728 ORTHO05D004174 2.5e-08 62.4 75 50.7
DCAR_030475 Daucus carota HOM05D001728 ORTHO05D004174 2.5e-08 62.4 75 50.7
Lj3A830T25 Lonicera japonica HOM05D001728 ORTHO05D004174 2.5e-08 62.4 76 48.7
Carub.0007s2527 Capsella rubella HOM05D001728 ORTHO05D004174 3.3e-08 62.0 61 42.6
Peaxi162Scf00017g00816 Petunia axillaris HOM05D001728 ORTHO05D004174 3.3e-08 62.0 60 53.3
SalBow2G0520 Salvia bowleyana HOM05D001728 ORTHO05D004174 3.3e-08 62.0 77 48.1
HPP92_008952 Vanilla planifolia HOM05D001728 ORTHO05D004174 3.3e-08 62.0 80 47.5
PGSC0003DMG400004699 Solanum tuberosum HOM05D001728 ORTHO05D004174 4.3e-08 61.6 58 56.9
vmacro15187 Vaccinium macrocarpon HOM05D001728 ORTHO05D004174 4.3e-08 61.6 54 57.4
Zm00001eb396060 Zea mays HOM05D001728 ORTHO05D004174 4.3e-08 61.6 81 43.2
Ah.13g071940 Amaranthus hybridus HOM05D001728 ORTHO05D004174 5.6e-08 61.2 76 46.1
EL10Ac3g05476 Beta vulgaris HOM05D001728 ORTHO05D004174 5.6e-08 61.2 68 47.1
Prupe.7G180600 Prunus persica HOM05D001728 ORTHO05D004174 7.3e-08 60.8 69 42.0
MSTRG.10147 Avicennia marina HOM05D001728 ORTHO05D004174 1.2e-07 60.1 74 51.4
AUR62041394 Chenopodium quinoa HOM05D001728 ORTHO05D004174 1.2e-07 60.1 54 55.6
Gohir.A09G234900 Gossypium hirsutum HOM05D001728 ORTHO05D004174 1.2e-07 60.1 87 44.8
Oeu046575.1 Olea europaea HOM05D001728 ORTHO05D004174 1.2e-07 60.1 76 44.7
Sc19g0003160 Simmondsia chinensis HOM05D001728 ORTHO05D004174 1.6e-07 59.7 29 86.2
CAN.G484.58 Capsicum annuum HOM05D001728 ORTHO05D004174 2.1e-07 59.3 28 89.3
ECA246G2493 Erigeron canadensis HOM05D001728 ORTHO05D004174 2.1e-07 59.3 73 43.8
Lsat_1_v5_gn_1_41000 Lactuca sativa HOM05D001728 ORTHO05D004174 2.8e-07 58.9 58 48.3
PGR031G3596 Punica granatum HOM05D001728 ORTHO05D004174 2.8e-07 58.9 45 60.0
HanXRQChr05g0148261 Helianthus annuus HOM05D001728 ORTHO05D004174 3.6e-07 58.5 28 85.7
Sp7g14760 Schrenkiella parvula HOM05D001728 ORTHO05D004174 3.6e-07 58.5 59 47.5
Nn1g01603 Nelumbo nucifera HOM05D001728 ORTHO05D004174 4.7e-07 58.2 54 57.4
THA.LOC104818887 Tarenaya hassleriana HOM05D001728 ORTHO05D004174 4.7e-07 58.2 60 51.7
MSTRG.21773 Avicennia marina HOM05D001728 ORTHO05D004174 8.0e-07 57.4 78 46.2
Mapoly0002s0227 Marchantia polymorpha HOM05D001728 ORTHO05D004174 1.4e-06 56.6 41 61.0
Lsat_1_v5_gn_6_116240 Lactuca sativa HOM05D001728 ORTHO05D004174 1.8e-06 56.2 28 78.6
Ca_21446_v3 Cicer arietinum L. HOM05D001728 ORTHO05D004174 2.3e-06 55.8 52 53.8
Thhalv10021196m.g Eutrema salsugineum HOM05D001728 ORTHO05D004174 3.1e-06 55.5 77 39.0
Os03g0308000 Oryza sativa ssp. japonica HOM05D001728 ORTHO05D004174 3.1e-06 55.5 86 36.0
Sp3g15220 Schrenkiella parvula HOM05D001728 ORTHO05D004174 3.1e-06 55.5 77 39.0
AT3G17000 Arabidopsis thaliana HOM05D001728 ORTHO05D004174 4.0e-06 55.1 83 39.8
BcaNung00213 Brassica carinata HOM05D001728 ORTHO05D004174 4.0e-06 55.1 61 42.6
CBR_g19546 Chara braunii HOM05D001728 ORTHO05D004174 5.2e-06 54.7 78 38.5
AL3G29980 Arabidopsis lyrata HOM05D001728 ORTHO05D004174 6.8e-06 54.3 77 40.3
A01p21340 Brassica napus HOM05D001728 ORTHO05D004174 6.8e-06 54.3 61 42.6
BraA01t02040Z Brassica rapa HOM05D001728 ORTHO05D004174 6.8e-06 54.3 61 42.6
Prupe.7G179700 Prunus persica HOM05D001728 ORTHO05D004174 6.8e-06 54.3 29 79.3
CDE02G0105 Ceratophyllum demersum HOM05D001728 ORTHO05D004174 8.9e-06 53.9 29 72.4
Hma1.2p1_0078F.1_g039990 Hydrangea macrophylla HOM05D001728 ORTHO05D004174 8.9e-06 53.9 86 40.7
Peaxi162Scf00228g00218 Petunia axillaris HOM05D001728 ORTHO05D004174 8.9e-06 53.9 86 40.7


User provided reference genes

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