Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 2.2e-247 858.6 457 100.0
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.1e-86 324.7 476 45.6
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 3.3e-70 270.0 455 42.4
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 1.4e-47 194.9 479 34.7
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 2.4e-44 184.1 475 35.4
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 3.8e-42 176.8 461 32.8
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 8.5e-42 175.6 494 32.6
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 4.2e-41 173.3 483 32.3
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 3.6e-40 170.2 464 34.1
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 6.1e-40 169.5 463 32.4
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 2.3e-39 167.5 462 34.2
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 3.0e-39 167.2 465 33.5
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 1.1e-38 165.2 520 31.0
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 3.7e-37 160.2 454 32.4
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 1.2e-35 155.2 464 30.4
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 2.6e-35 154.1 454 32.2
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 1.3e-34 151.8 457 32.6
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 1.3e-34 151.8 459 33.1
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 2.2e-34 151.0 474 30.8
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 2.2e-34 151.0 454 31.5
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 3.2e-33 147.1 473 31.7
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 3.2e-33 147.1 459 31.2
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 9.4e-33 145.6 494 30.2
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 9.4e-33 145.6 460 31.7
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.7e-32 144.1 493 29.8
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 8.0e-32 142.5 454 30.6
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 1.0e-31 142.1 459 32.2
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 1.0e-31 142.1 463 30.2
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.4e-31 141.7 449 31.2
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.4e-31 141.7 449 31.2
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 8.8e-31 139.0 467 31.5
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.5e-30 138.3 540 28.1
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 2.0e-30 137.9 537 28.1
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 7.5e-30 136.0 452 31.2
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.3e-29 135.2 313 35.1
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 2.8e-29 134.0 463 28.5
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 3.7e-29 133.7 464 30.2
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.7e-29 133.7 480 29.2
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 1.1e-28 132.1 463 30.0
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.4e-28 131.0 240 39.6
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 2.4e-28 131.0 492 27.8
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 4.1e-28 130.2 477 30.0
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 5.3e-28 129.8 469 29.4
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 5.3e-28 129.8 487 30.2
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 1.2e-27 128.6 601 26.5
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 2.0e-27 127.9 453 30.9
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 2.7e-27 127.5 471 28.2
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 3.5e-27 127.1 131 48.9
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 4.5e-27 126.7 450 29.3
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 5.9e-27 126.3 484 28.1
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 7.7e-27 125.9 470 28.7
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.0e-26 125.6 478 29.3
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 1.0e-26 125.6 484 28.5
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 1.3e-26 125.2 473 31.3
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 2.2e-26 124.4 452 27.9
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 3.8e-26 123.6 122 51.6
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 5.0e-26 123.2 471 29.5
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 5.0e-26 123.2 440 28.6
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 5.0e-26 123.2 108 53.7
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 5.0e-26 123.2 461 29.3
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 6.5e-26 122.9 471 27.8
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 6.5e-26 122.9 470 28.5
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 6.5e-26 122.9 248 36.3
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 1.1e-25 122.1 103 57.3
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 1.1e-25 122.1 448 30.4
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 1.5e-25 121.7 470 27.9
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 2.5e-25 120.9 432 30.6
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 4.2e-25 120.2 456 27.4
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 4.2e-25 120.2 156 41.7
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 4.2e-25 120.2 474 28.5
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 7.2e-25 119.4 444 27.0
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 9.4e-25 119.0 460 28.0
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.2e-24 118.6 546 24.7
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 1.2e-24 118.6 455 27.3
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 1.6e-24 118.2 456 27.9
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 1.6e-24 118.2 456 27.9
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 1.6e-24 118.2 453 29.8
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 2.1e-24 117.9 106 53.8
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 2.1e-24 117.9 146 46.6
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 3.6e-24 117.1 467 27.8
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 3.6e-24 117.1 105 54.3
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 3.6e-24 117.1 141 47.5
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 6.1e-24 116.3 451 26.2
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 8.0e-24 115.9 454 27.8
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 1.4e-23 115.2 107 51.4
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 1.4e-23 115.2 453 29.4
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 1.8e-23 114.8 507 27.0
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 2.3e-23 114.4 458 26.6
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 2.3e-23 114.4 458 26.6
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.3e-23 114.4 455 27.5
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 3.0e-23 114.0 452 27.9
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 6.8e-23 112.8 447 28.4
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 8.8e-23 112.5 209 38.8
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 1.5e-22 111.7 465 29.7
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 2.6e-22 110.9 540 25.2
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 3.4e-22 110.5 162 42.0
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 4.4e-22 110.2 447 28.0
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 4.4e-22 110.2 501 26.1
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 7.5e-22 109.4 444 27.9
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 2.2e-21 107.8 579 24.4
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 3.7e-21 107.1 450 27.1
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 4.8e-21 106.7 452 27.4
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 8.3e-21 105.9 149 44.3
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 1.1e-20 105.5 450 25.3
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.4e-20 105.1 465 27.5
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 1.4e-20 105.1 488 25.4
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 1.8e-20 104.8 490 25.3
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 2.4e-20 104.4 444 28.4
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.4e-20 104.4 137 46.7
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 4.1e-20 103.6 328 29.6
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 1.2e-19 102.1 460 29.1
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 1.6e-19 101.7 476 25.6
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 2.0e-19 101.3 563 24.3
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.7e-19 100.9 532 25.2
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 2.7e-19 100.9 281 30.6
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 4.5e-19 100.1 477 27.5
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 4.5e-19 100.1 115 48.7
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 7.7e-19 99.4 102 51.0
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.3e-18 98.6 275 34.9
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 2.3e-18 97.8 223 31.8
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 5.0e-18 96.7 465 26.9
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 5.0e-18 96.7 547 24.7
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 1.5e-17 95.1 341 28.4
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 1.5e-17 95.1 465 26.9
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 1.9e-17 94.7 115 41.7
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 3.3e-17 94.0 537 25.7
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 7.2e-17 92.8 452 25.4
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 4.7e-16 90.1 448 27.7
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 8.0e-16 89.4 154 37.7
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 4.0e-15 87.0 541 25.1
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 8.9e-15 85.9 492 26.0
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 2.6e-14 84.3 184 35.9
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 7.5e-14 82.8 492 25.4
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 9.8e-14 82.4 351 27.4
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 3.1e-12 77.4 114 38.6
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 5.0e-10 70.1 102 37.3
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 6.6e-10 69.7 86 43.0
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 1.9e-09 68.2 51 56.9
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.6e-08 65.1 40 70.0
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 3.6e-08 63.9 95 36.8
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 3.6e-08 63.9 115 36.5
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 6.1e-08 63.2 48 60.4
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 8.0e-08 62.8 89 41.6
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 4.0e-07 60.5 44 61.4
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 2.0e-06 58.2 53 56.6
Cre09.g402350 Chlamydomonas reinhardtii HOM05D004833 ORTHO05D005671 9.8e-06 55.8 155 27.7


User provided reference genes

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