Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.1e-121 439.9 215 100.0
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.3e-64 250.4 464 36.6
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 8.0e-59 231.1 466 36.1
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 1.0e-58 230.7 465 35.1
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 5.2e-58 228.4 465 34.4
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 5.7e-57 224.9 464 34.3
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 1.1e-55 220.7 463 33.5
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 1.4e-55 220.3 464 34.1
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 2.0e-54 216.5 466 33.9
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 2.7e-54 216.1 468 34.0
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 3.5e-54 215.7 479 32.8
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 3.5e-54 215.7 464 33.8
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 1.3e-53 213.8 465 33.5
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 1.7e-53 213.4 465 32.7
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 3.9e-53 212.2 468 33.5
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 5.0e-53 211.8 465 33.1
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 6.6e-53 211.5 465 33.5
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 6.6e-53 211.5 487 31.6
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 4.3e-52 208.8 465 32.5
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 7.3e-52 208.0 467 33.8
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 2.8e-51 206.1 469 33.5
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 6.2e-51 204.9 488 31.6
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 8.0e-51 204.5 467 33.2
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.0e-50 204.1 463 32.0
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 3.1e-50 202.6 467 32.8
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.2e-50 201.8 463 31.7
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.2e-50 201.8 463 31.7
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.2e-50 201.8 463 31.7
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 6.8e-50 201.4 463 32.0
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 8.9e-50 201.1 470 33.0
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 1.2e-49 200.7 463 32.6
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 4.4e-49 198.7 463 31.3
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 7.5e-49 198.0 472 32.6
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 6.4e-48 194.9 467 31.7
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 2.4e-47 193.0 507 30.6
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 9.2e-47 191.0 423 33.6
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 9.2e-47 191.0 496 30.8
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.7e-46 189.5 463 30.5
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 1.0e-45 187.6 429 33.6
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 3.0e-45 186.0 462 31.4
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 6.6e-45 184.9 466 30.9
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 8.6e-45 184.5 465 31.4
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 1.1e-44 184.1 465 30.8
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 1.5e-44 183.7 489 30.1
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.5e-44 183.7 465 30.8
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 1.2e-43 180.6 465 30.8
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 2.8e-43 179.5 465 31.0
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 6.2e-43 178.3 521 28.8
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 1.8e-42 176.8 501 28.9
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 5.2e-42 175.3 378 33.3
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 6.8e-42 174.9 524 29.0
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 1.2e-41 174.1 464 29.7
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 2.0e-41 173.3 464 29.7
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 1.3e-40 170.6 544 29.0
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 4.9e-40 168.7 114 71.9
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 1.1e-39 167.5 461 30.4
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 1.9e-39 166.8 465 29.2
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 1.9e-39 166.8 101 80.2
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 4.1e-39 165.6 466 29.2
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 9.2e-39 164.5 544 28.7
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 1.2e-38 164.1 478 28.5
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 2.1e-38 163.3 478 29.5
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 2.1e-38 163.3 490 28.2
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 2.7e-38 162.9 101 79.2
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 4.6e-38 162.2 147 58.5
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 4.6e-38 162.2 467 29.3
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 1.0e-37 161.0 466 28.5
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 1.3e-37 160.6 101 79.2
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 1.3e-37 160.6 466 28.5
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 1.7e-37 160.2 470 28.5
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 1.7e-37 160.2 463 29.6
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 2.3e-37 159.8 472 30.7
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 2.3e-37 159.8 101 78.2
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 1.1e-36 157.5 94 81.9
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 1.1e-36 157.5 457 30.0
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.9e-36 156.8 102 78.4
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 1.9e-36 156.8 487 27.9
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 4.3e-36 155.6 456 29.6
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 7.3e-36 154.8 101 79.2
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 9.5e-36 154.5 446 31.8
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 1.2e-35 154.1 102 80.4
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 2.8e-35 152.9 214 44.9
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 3.6e-35 152.5 96 81.2
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 3.6e-35 152.5 478 30.1
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 6.2e-35 151.8 101 78.2
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 6.2e-35 151.8 93 79.6
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 4.0e-34 149.1 101 74.3
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 5.2e-34 148.7 475 27.2
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 8.9e-34 147.9 460 29.3
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 8.9e-34 147.9 498 25.9
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 2.0e-33 146.7 472 29.9
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.6e-33 146.4 465 28.8
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 4.4e-33 145.6 461 28.4
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 5.8e-33 145.2 469 28.8
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 5.8e-33 145.2 102 73.5
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 7.6e-33 144.8 468 27.8
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 1.7e-32 143.7 472 29.7
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 2.2e-32 143.3 106 70.8
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 2.9e-32 142.9 470 28.3
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 3.8e-32 142.5 95 75.8
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 4.9e-32 142.1 100 74.0
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 1.1e-31 141.0 94 77.7
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 2.4e-31 139.8 102 72.5
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 3.2e-31 139.4 473 29.4
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 5.4e-31 138.7 99 70.7
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 5.4e-31 138.7 94 72.3
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 7.1e-31 138.3 102 72.5
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 7.1e-31 138.3 146 49.3
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 9.2e-31 137.9 105 69.5
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 2.7e-30 136.3 102 71.6
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 3.5e-30 136.0 103 70.9
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 3.5e-30 136.0 103 70.9
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 7.8e-30 134.8 474 28.7
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 1.0e-29 134.4 109 66.1
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 1.3e-29 134.0 105 68.6
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 3.0e-29 132.9 118 59.3
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 1.2e-27 127.5 97 72.2
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.4e-26 123.2 112 58.9
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 9.9e-25 117.9 105 61.9
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 8.4e-24 114.8 70 84.3
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 6.0e-22 108.6 109 55.0
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 3.9e-21 105.9 102 54.9
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 4.3e-20 102.4 117 47.9
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 7.3e-20 101.7 109 52.3
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 1.3e-19 100.9 83 69.9
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.8e-18 97.1 110 51.8
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 6.9e-18 95.1 100 53.0
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 9.9e-17 91.3 186 34.9
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 8.4e-16 88.2 133 40.6
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 1.9e-15 87.0 109 46.8
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 2.1e-11 73.6 41 80.5
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 6.9e-10 68.6 91 51.6
C06p28210 Brassica napus HOM05D005852 ORTHO05D041612 1.9e-07 60.5 62 50.0
BolC6t37987H Brassica oleracea HOM05D005852 ORTHO05D041612 1.9e-07 60.5 62 50.0


User provided reference genes

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