Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25480 Nelumbo nucifera HOM05D002202 ORTHO05D002176 6.5e-27 123.2 59 100.0
Nn4g25508 Nelumbo nucifera HOM05D002202 ORTHO05D002176 6.5e-27 123.2 59 100.0
Nn4g22015 Nelumbo nucifera HOM05D002202 ORTHO05D002176 2.6e-20 101.3 47 100.0
Nn4g25485 Nelumbo nucifera HOM05D002202 ORTHO05D002176 2.6e-20 101.3 47 100.0
Nn4g25496 Nelumbo nucifera HOM05D002202 ORTHO05D002176 2.6e-20 101.3 47 100.0
Nn4g25505 Nelumbo nucifera HOM05D002202 ORTHO05D002176 2.6e-20 101.3 47 100.0
Nn2g10464 Nelumbo nucifera HOM05D002202 ORTHO05D002176 1.1e-15 85.9 50 86.0
Nn2g12896 Nelumbo nucifera HOM05D002202 ORTHO05D002176 2.0e-12 75.1 46 80.4
TAR633G0336 Trochodendron aralioides HOM05D002202 ORTHO05D002176 7.7e-12 73.2 50 70.0
TAR623G0233 Trochodendron aralioides HOM05D002202 ORTHO05D002176 3.2e-10 67.8 47 70.2
CiPaw.02G181500 Carya illinoinensis HOM05D002202 ORTHO05D002176 5.5e-10 67.0 50 58.0
COL.COLO4_14950 Corchorus olitorius HOM05D002202 ORTHO05D002176 2.7e-09 64.7 50 60.0
Thecc.09G327300 Theobroma cacao HOM05D002202 ORTHO05D002176 3.6e-09 64.3 46 67.4
CiPaw.01G282900 Carya illinoinensis HOM05D002202 ORTHO05D002176 4.7e-09 63.9 48 54.2
QL01p033136 Quercus lobata HOM05D002202 ORTHO05D002176 4.7e-09 63.9 49 65.3
COL.COLO4_18453 Corchorus olitorius HOM05D002202 ORTHO05D002176 6.1e-09 63.5 46 67.4
Thecc.10G048200 Theobroma cacao HOM05D002202 ORTHO05D002176 6.1e-09 63.5 50 58.0
Glyma.18G287300 Glycine max HOM05D002202 ORTHO05D002176 7.9e-09 63.2 66 47.0
Cpa.g.sc190.29 Carica papaya HOM05D002202 ORTHO05D002176 1.0e-08 62.8 46 67.4
Gohir.A13G020200 Gossypium hirsutum HOM05D002202 ORTHO05D002176 1.4e-08 62.4 50 56.0
Gohir.D13G020800 Gossypium hirsutum HOM05D002202 ORTHO05D002176 1.4e-08 62.4 50 56.0
Gorai.013G023200 Gossypium raimondii HOM05D002202 ORTHO05D002176 1.4e-08 62.4 50 56.0
Aqoxy2G02019 Aquilegia oxysepala HOM05D002202 ORTHO05D002176 1.8e-08 62.0 47 61.7
Dinv35643 Davidia involucrata HOM05D002202 ORTHO05D002176 1.8e-08 62.0 50 60.0
Hma1.2p1_0573F.1_g181390 Hydrangea macrophylla HOM05D002202 ORTHO05D002176 1.8e-08 62.0 47 63.8
GSVIVG01025029001 Vitis vinifera HOM05D002202 ORTHO05D002176 1.8e-08 62.0 46 67.4
CSS0015931 Camellia sinensis var. sinensis HOM05D002202 ORTHO05D002176 2.3e-08 61.6 46 65.2
CSS0036599 Camellia sinensis var. sinensis HOM05D002202 ORTHO05D002176 2.3e-08 61.6 46 65.2
Gohir.D05G097900 Gossypium hirsutum HOM05D002202 ORTHO05D002176 2.3e-08 61.6 46 65.2
Gorai.009G101500 Gossypium raimondii HOM05D002202 ORTHO05D002176 2.3e-08 61.6 46 65.2
Lalb_Chr10g0091821 Lupinus albus HOM05D002202 ORTHO05D002176 2.3e-08 61.6 66 43.9
CSS0021223 Camellia sinensis var. sinensis HOM05D002202 ORTHO05D002176 3.0e-08 61.2 47 66.0
Duzib114G0588 Durio zibethinus HOM05D002202 ORTHO05D002176 3.9e-08 60.8 50 58.0
CSS0013315 Camellia sinensis var. sinensis HOM05D002202 ORTHO05D002176 5.1e-08 60.5 48 62.5
CSS0014751 Camellia sinensis var. sinensis HOM05D002202 ORTHO05D002176 5.1e-08 60.5 48 62.5
Gohir.A05G097800 Gossypium hirsutum HOM05D002202 ORTHO05D002176 5.1e-08 60.5 46 63.0
vmacro03109 Vaccinium macrocarpon HOM05D002202 ORTHO05D002176 5.1e-08 60.5 48 62.5
VMungo1383G2878 Vigna mungo HOM05D002202 ORTHO05D002176 5.1e-08 60.5 47 55.3
Haze_24039 Corylus avellana HOM05D002202 ORTHO05D002176 6.7e-08 60.1 49 61.2
Duzib128G1640 Durio zibethinus HOM05D002202 ORTHO05D002176 6.7e-08 60.1 50 56.0
Lj1g0012208 Lotus japonicus HOM05D002202 ORTHO05D002176 6.7e-08 60.1 66 43.9
Dinv31425 Davidia involucrata HOM05D002202 ORTHO05D002176 8.8e-08 59.7 50 64.0
Sed0020075 Sechium edule HOM05D002202 ORTHO05D002176 8.8e-08 59.7 52 51.9
Dinv25979 Davidia involucrata HOM05D002202 ORTHO05D002176 1.1e-07 59.3 50 64.0
Glyma.02G094400 Glycine max HOM05D002202 ORTHO05D002176 1.1e-07 59.3 66 42.4
Hma1.2p1_1481F.1_g286110 Hydrangea macrophylla HOM05D002202 ORTHO05D002176 1.5e-07 58.9 50 56.0
Hma1.2p1_1707F.1_g298460 Hydrangea macrophylla HOM05D002202 ORTHO05D002176 1.5e-07 58.9 50 56.0
vmacro14506 Vaccinium macrocarpon HOM05D002202 ORTHO05D002176 1.5e-07 58.9 48 60.4
Duzib168G0258 Durio zibethinus HOM05D002202 ORTHO05D002176 2.0e-07 58.5 48 62.5
Sc20g0004490 Simmondsia chinensis HOM05D002202 ORTHO05D002176 2.0e-07 58.5 50 62.0
Haze_17025 Corylus avellana HOM05D002202 ORTHO05D002176 2.6e-07 58.2 50 50.0
Hma1.2p1_0624F.1_g191270 Hydrangea macrophylla HOM05D002202 ORTHO05D002176 2.6e-07 58.2 46 63.0
Rhsim01G0224700 Rhododendron simsii HOM05D002202 ORTHO05D002176 2.6e-07 58.2 46 60.9
Lj8A88T25 Lonicera japonica HOM05D002202 ORTHO05D002176 3.3e-07 57.8 47 57.4
Phvul.008G014500 Phaseolus vulgaris HOM05D002202 ORTHO05D002176 3.3e-07 57.8 47 53.2
Sabra10G0161700 Salix brachista HOM05D002202 ORTHO05D002176 3.3e-07 57.8 48 56.2
arahy.Tifrunner.gnm1.ann1.VTI2KS Arachis hypogaea HOM05D002202 ORTHO05D002176 4.4e-07 57.4 48 56.2
arahy.Tifrunner.gnm1.ann1.VXB2VZ Arachis hypogaea HOM05D002202 ORTHO05D002176 4.4e-07 57.4 48 56.2
Prupe.6G083800 Prunus persica HOM05D002202 ORTHO05D002176 4.4e-07 57.4 49 61.2
CiPaw.14G072100 Carya illinoinensis HOM05D002202 ORTHO05D002176 5.7e-07 57.0 49 61.2
Duzib170G0150 Durio zibethinus HOM05D002202 ORTHO05D002176 5.7e-07 57.0 48 60.4
Hma1.2p1_0035F.1_g022070 Hydrangea macrophylla HOM05D002202 ORTHO05D002176 5.7e-07 57.0 46 60.9
vmacro14505 Vaccinium macrocarpon HOM05D002202 ORTHO05D002176 5.7e-07 57.0 44 63.6
Actinidia13121 Actinidia chinensis HOM05D002202 ORTHO05D002176 7.4e-07 56.6 50 56.0
MELO3C023841.2 Cucumis melo HOM05D002202 ORTHO05D002176 7.4e-07 56.6 50 52.0
CsaV3_5G006950 Cucumis sativus L. HOM05D002202 ORTHO05D002176 7.4e-07 56.6 50 52.0
FvH4_7g21830 Fragaria vesca HOM05D002202 ORTHO05D002176 7.4e-07 56.6 50 52.0
FAN06G0594 Fragaria x ananassa HOM05D000028 ORTHO05D002176 7.4e-07 56.6 50 52.0
FAN06G3333 Fragaria x ananassa HOM05D002202 ORTHO05D002176 7.4e-07 56.6 50 52.0
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 9.7e-07 56.2 50 54.0
Actinidia13861 Actinidia chinensis HOM05D002202 ORTHO05D002176 9.7e-07 56.2 47 59.6
CSS0027045 Camellia sinensis var. sinensis HOM05D002202 ORTHO05D002176 9.7e-07 56.2 49 57.1
Ciclev10030855m.g Citrus clementina HOM05D002202 ORTHO05D002176 9.7e-07 56.2 46 60.9
FAN01G0472 Fragaria x ananassa HOM05D002202 ORTHO05D002176 9.7e-07 56.2 50 54.0
Manes.04G031200 Manihot esculenta HOM05D002202 ORTHO05D002176 9.7e-07 56.2 47 61.7
Peaxi162Scf00039g01013 Petunia axillaris HOM05D002202 ORTHO05D002176 1.3e-06 55.8 50 56.0
Solyc09g010350.4 Solanum lycopersicum HOM05D002202 ORTHO05D002176 1.3e-06 55.8 50 56.0
Sopen09g005080 Solanum pennellii HOM05D002202 ORTHO05D002176 1.3e-06 55.8 50 56.0
PGSC0003DMG400008933 Solanum tuberosum HOM05D002202 ORTHO05D002176 1.3e-06 55.8 50 56.0
Atru.chr3.3825 Acer truncatum HOM05D002202 ORTHO05D002176 1.7e-06 55.5 45 62.2
Dinv32852 Davidia involucrata HOM05D002202 ORTHO05D002176 1.7e-06 55.5 46 60.9
Rhsim03G0128600 Rhododendron simsii HOM05D002202 ORTHO05D002176 1.7e-06 55.5 47 57.4
RcHm_v2.0_Chr1g0366111 Rosa chinensis HOM05D002202 ORTHO05D002176 1.7e-06 55.5 50 48.0
Actinidia29209 Actinidia chinensis HOM05D002202 ORTHO05D002176 2.2e-06 55.1 47 57.4
arahy.Tifrunner.gnm1.ann1.88FAZH Arachis hypogaea HOM05D002202 ORTHO05D002176 2.2e-06 55.1 66 42.4
arahy.Tifrunner.gnm1.ann1.VC1WKW Arachis hypogaea HOM05D002202 ORTHO05D002176 2.2e-06 55.1 66 42.4
ClCG07G003180 Citrullus lanatus HOM05D002202 ORTHO05D002176 2.2e-06 55.1 50 50.0
Lj2A1056T36 Lonicera japonica HOM05D002202 ORTHO05D002176 2.2e-06 55.1 49 57.1
Manes.07G112000 Manihot esculenta HOM05D002202 ORTHO05D002176 2.2e-06 55.1 47 55.3
Potri.010G209300 Populus trichocarpa HOM05D002202 ORTHO05D002176 3.7e-06 54.3 48 54.2
Prupe.6G249500 Prunus persica HOM05D002202 ORTHO05D002176 3.7e-06 54.3 47 55.3
ECA238G4435 Erigeron canadensis HOM05D002202 ORTHO05D002176 4.8e-06 53.9 41 61.0
Psat3g184160 Pisum sativum HOM05D002202 ORTHO05D002176 4.8e-06 53.9 40 57.5
Sabra16G0142000 Salix brachista HOM05D002202 ORTHO05D002176 4.8e-06 53.9 46 56.5
CSS0046989 Camellia sinensis var. sinensis HOM05D002202 ORTHO05D002176 6.3e-06 53.5 49 55.1
CAN.G807.3 Capsicum annuum HOM05D002202 ORTHO05D002176 6.3e-06 53.5 50 54.0
Eucgr.G02911 Eucalyptus grandis HOM05D002202 ORTHO05D002176 6.3e-06 53.5 47 51.1
HanXRQChr08g0228201 Helianthus annuus HOM05D002202 ORTHO05D002176 6.3e-06 53.5 46 58.7
TWI74G1658 Tripterygium wilfordii HOM05D002202 ORTHO05D002176 6.3e-06 53.5 47 55.3
Actinidia20459 Actinidia chinensis HOM05D002202 ORTHO05D002176 8.2e-06 53.1 45 62.2
Ca_07218_v3 Cicer arietinum L. HOM05D002202 ORTHO05D002176 8.2e-06 53.1 43 53.5
Ca_19189_v3 Cicer arietinum L. HOM05D002202 ORTHO05D002176 8.2e-06 53.1 46 56.5
Ciclev10011464m.g Citrus clementina HOM05D002202 ORTHO05D002176 8.2e-06 53.1 50 52.0
Nitab4.5_0008142g0050 Nicotiana tabacum HOM05D002202 ORTHO05D002176 8.2e-06 53.1 50 52.0
PSO339G6463 Papaver somniferum HOM05D002202 ORTHO05D002176 8.2e-06 53.1 47 57.4
Rhsim13G0086300 Rhododendron simsii HOM05D002202 ORTHO05D002176 8.2e-06 53.1 46 56.5


User provided reference genes

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