Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.4e-215 752.7 388 100.0
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 8.0e-126 454.5 349 71.3
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.2e-116 424.1 360 66.7
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 4.9e-115 418.7 352 64.2
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 2.1e-113 413.3 346 63.6
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 7.8e-113 411.4 345 63.8
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 9.5e-111 404.4 345 64.1
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 2.8e-110 402.9 344 63.1
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 1.4e-109 400.6 345 62.6
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 5.2e-109 398.7 346 62.1
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 2.6e-108 396.4 338 62.7
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 2.2e-107 393.3 346 61.3
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 2.2e-107 393.3 345 60.9
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 3.8e-107 392.5 337 62.3
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 4.9e-107 392.1 350 59.7
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 8.4e-107 391.3 345 59.4
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 2.4e-106 389.8 348 60.9
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 3.2e-106 389.4 347 60.5
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 7.1e-106 388.3 350 59.7
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 2.1e-105 386.7 348 61.8
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.7e-105 386.3 347 61.7
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 3.5e-105 386.0 345 60.9
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.7e-104 383.6 347 61.7
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 2.3e-104 383.3 347 61.4
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 3.9e-104 382.5 346 60.4
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 6.6e-104 381.7 349 59.9
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.5e-103 380.6 345 59.4
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.3e-103 379.4 345 59.7
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 7.3e-103 378.3 346 58.7
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 1.6e-102 377.1 346 58.7
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.8e-102 376.3 346 60.7
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 3.6e-102 375.9 342 62.6
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 3.6e-102 375.9 349 61.0
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.4e-101 373.2 346 60.4
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 5.3e-101 372.1 343 59.5
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.9e-101 371.7 339 59.9
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.9e-101 371.7 339 59.9
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 9.0e-101 371.3 344 58.7
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.5e-100 370.5 338 59.5
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 1.5e-100 370.5 343 59.8
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 5.8e-100 368.6 345 60.0
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 7.6e-100 368.2 344 59.9
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.7e-99 367.1 346 59.2
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 3.8e-99 365.9 345 59.7
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 6.4e-99 365.2 334 59.0
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 1.9e-98 363.6 409 51.1
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 5.4e-98 362.1 351 57.3
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 5.4e-98 362.1 345 58.0
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 9.3e-98 361.3 338 59.2
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 9.3e-98 361.3 338 59.2
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 2.7e-97 359.8 348 58.9
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.3e-96 356.7 338 58.6
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 6.6e-96 355.1 345 58.6
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 6.6e-96 355.1 414 50.5
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 8.7e-96 354.8 336 58.6
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.5e-95 354.0 345 58.6
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 4.3e-95 352.4 344 56.7
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 7.3e-95 351.7 345 57.4
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 9.6e-95 351.3 346 57.5
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 2.1e-94 350.1 349 57.0
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 3.6e-94 349.4 346 57.5
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 1.1e-93 347.8 346 56.6
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 2.4e-93 346.7 349 55.6
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 2.4e-93 346.7 344 56.4
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 3.1e-93 346.3 389 52.2
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 3.1e-93 346.3 346 56.4
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 6.9e-93 345.1 344 56.7
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 6.9e-93 345.1 349 56.2
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 1.2e-92 344.4 333 58.9
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.5e-92 344.0 346 57.8
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 2.6e-92 343.2 345 55.9
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 1.1e-90 337.8 346 54.9
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 2.4e-90 336.7 346 54.3
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 3.2e-90 336.3 359 56.0
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 9.3e-90 334.7 348 55.2
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 2.1e-89 333.6 345 55.9
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 6.0e-89 332.0 345 54.8
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 7.9e-89 331.6 344 57.0
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 7.9e-89 331.6 299 60.9
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.0e-88 331.3 353 52.4
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.3e-88 330.9 348 55.5
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 3.0e-88 329.7 398 48.5
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 3.9e-88 329.3 334 54.8
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 5.1e-88 328.9 346 54.6
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 2.5e-87 326.6 346 54.3
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 3.3e-87 326.2 348 54.0
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 5.6e-87 325.5 347 55.6
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 7.4e-87 325.1 346 54.6
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 1.6e-86 323.9 348 55.5
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.6e-86 323.9 348 54.0
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.4e-85 320.9 341 54.3
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 2.4e-85 320.1 349 54.7
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 1.5e-84 317.4 345 55.1
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 3.4e-84 316.2 347 52.4
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.4e-84 316.2 349 53.6
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 1.3e-83 314.3 346 54.6
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 2.2e-83 313.5 341 54.3
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 2.2e-83 313.5 348 53.7
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 2.2e-83 313.5 345 53.0
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 4.9e-83 312.4 346 52.9
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 8.4e-83 311.6 345 51.9
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 3.2e-82 309.7 345 51.3
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 3.2e-82 309.7 348 54.9
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.2e-81 307.8 340 53.2
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 3.5e-81 306.2 325 54.5
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 6.0e-81 305.4 346 50.9
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 6.0e-81 305.4 350 53.4
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 7.9e-81 305.1 349 50.7
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 2.3e-80 303.5 347 52.4
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 3.0e-80 303.1 350 50.9
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 5.1e-80 302.4 347 51.3
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 1.1e-79 301.2 347 50.7
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.5e-79 300.8 344 51.5
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 4.3e-79 299.3 354 50.6
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 4.3e-79 299.3 341 51.6
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 5.7e-79 298.9 347 50.7
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 7.4e-79 298.5 349 51.6
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 1.3e-78 297.7 274 58.8
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.6e-78 297.4 346 50.0
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 6.2e-78 295.4 351 51.3
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 2.2e-75 287.0 346 50.3
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 2.9e-75 286.6 346 50.3
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 6.5e-75 285.4 345 50.1
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 6.5e-75 285.4 345 50.1
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 1.2e-73 281.2 346 49.4
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 1.6e-73 280.8 322 53.1
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 3.5e-73 279.6 345 49.9
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 1.0e-72 278.1 347 49.0
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 1.8e-72 277.3 348 48.9
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 3.9e-72 276.2 347 48.7
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 6.7e-72 275.4 345 48.7
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 8.7e-72 275.0 342 48.8
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 8.7e-72 275.0 349 48.4
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 8.7e-72 275.0 342 48.8
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.5e-71 274.2 262 59.2
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 5.7e-71 272.3 351 48.7
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 1.6e-70 270.8 345 48.7
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 2.8e-70 270.0 349 48.7
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 1.1e-69 268.1 268 56.7
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 5.9e-68 262.3 245 58.4
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 3.6e-65 253.1 268 56.3
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 1.1e-61 241.5 341 48.1
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 3.4e-60 236.5 344 45.6
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 7.4e-55 218.8 248 49.6
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 5.9e-52 209.1 208 57.7
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.9e-42 177.6 349 35.8
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 2.4e-37 160.6 387 34.9
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 3.2e-34 150.2 338 35.8
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.8e-29 134.4 249 36.5
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 9.2e-21 105.5 153 43.8
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 3.5e-20 103.6 240 32.9
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.0e-19 102.1 149 44.3
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.4e-16 91.7 156 38.5
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 5.0e-11 73.2 107 43.0
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 1.1e-08 65.5 195 30.8
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 1.1e-08 65.5 143 33.6
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 2.6e-07 60.8 268 25.4
Pp3c7_3600 Physcomitrium patens HOM05D017133 ORTHO05D019609 3.4e-07 60.5 342 22.8
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 2.9e-06 57.4 168 26.8
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 8.3e-06 55.8 353 24.4


User provided reference genes

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