Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25353 Nelumbo nucifera HOM05D005773 ORTHO05D006930 4.4e-201 704.5 381 100.0
Nn3g21943 Nelumbo nucifera HOM05D005773 ORTHO05D006930 1.5e-87 327.4 393 57.5
TAR633G1051 Trochodendron aralioides HOM05D005773 ORTHO05D006930 3.4e-84 316.2 391 53.5
MBI19_g30285_MAGBIO Magnolia biondii HOM05D005773 ORTHO05D006930 1.3e-67 261.2 387 48.8
Aqoxy2G02493 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 2.8e-62 243.4 390 46.9
Haze_00756 Corylus avellana HOM05D005773 ORTHO05D006930 1.4e-58 231.1 387 43.2
MD13G1156700 Malus domestica HOM05D005773 ORTHO05D006930 1.0e-56 224.9 398 40.2
Prupe.1G103600 Prunus persica HOM05D005773 ORTHO05D006930 1.3e-56 224.6 400 43.8
GSVIVG01017699001 Vitis vinifera HOM05D005773 ORTHO05D006930 2.8e-54 216.9 341 44.6
Nn3g21941 Nelumbo nucifera HOM05D005773 ORTHO05D006930 6.8e-53 212.2 379 44.3
QL06p014502 Quercus lobata HOM05D005773 ORTHO05D006930 5.8e-52 209.1 401 39.4
MD16G1134300 Malus domestica HOM05D005773 ORTHO05D006930 7.6e-52 208.8 401 41.9
Dinv24720 Davidia involucrata HOM05D005773 ORTHO05D006930 6.4e-51 205.7 386 44.8
RcHm_v2.0_Chr4g0427881 Rosa chinensis HOM05D005773 ORTHO05D006930 2.4e-50 203.8 392 40.8
PSO210G3229 Papaver somniferum HOM05D005773 ORTHO05D006930 7.1e-50 202.2 340 45.3
Thecc.01G324900 Theobroma cacao HOM05D005773 ORTHO05D006930 7.8e-49 198.7 418 36.1
Gorai.007G116800 Gossypium raimondii HOM05D005773 ORTHO05D006930 5.1e-48 196.1 400 39.0
Duzib138G1928 Durio zibethinus HOM05D005773 ORTHO05D006930 2.5e-47 193.7 396 37.9
MSTRG.14719 Avicennia marina HOM05D005773 ORTHO05D006930 9.6e-47 191.8 381 37.5
Gohir.D11G109200 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.2e-46 191.4 399 38.8
FAN07G0153 Fragaria x ananassa HOM05D005773 ORTHO05D006930 2.8e-46 190.3 393 40.5
Oeu012285.1 Olea europaea HOM05D005773 ORTHO05D006930 2.8e-46 190.3 415 37.3
Gohir.A11G104400 Gossypium hirsutum HOM05D005773 ORTHO05D006930 8.1e-46 188.7 399 41.6
CSS0030034 Camellia sinensis var. sinensis HOM05D005773 ORTHO05D006930 1.1e-45 188.3 304 43.1
Duzib133G1161 Durio zibethinus HOM05D005773 ORTHO05D006930 2.4e-45 187.2 392 37.0
Manes.03G212700 Manihot esculenta HOM05D005773 ORTHO05D006930 8.9e-45 185.3 373 39.7
FAN17G1594 Fragaria x ananassa HOM05D005773 ORTHO05D006930 2.0e-44 184.1 387 39.5
FvH4_4g21650 Fragaria vesca HOM05D005773 ORTHO05D006930 2.6e-44 183.7 391 39.1
CiPaw.01G128000 Carya illinoinensis HOM05D005773 ORTHO05D006930 3.8e-43 179.9 274 44.9
Actinidia18514 Actinidia chinensis HOM05D005773 ORTHO05D006930 1.2e-41 174.9 414 36.0
Aa31LG10G5470 Aethionema arabicum HOM05D005773 ORTHO05D006930 2.7e-41 173.7 387 37.0
BcaB04g17451 Brassica carinata HOM05D005773 ORTHO05D006930 7.8e-41 172.2 380 37.9
Hund12260 Selenicereus undatus HOM05D005773 ORTHO05D006930 3.0e-40 170.2 388 35.8
THA.LOC104802618 Tarenaya hassleriana HOM05D005773 ORTHO05D006930 3.0e-40 170.2 403 40.4
CARHR037910 Cardamine hirsuta HOM05D005773 ORTHO05D006930 3.9e-40 169.9 388 37.9
TWI53G0973 Tripterygium wilfordii HOM05D005773 ORTHO05D006930 3.3e-39 166.8 375 38.7
AL1G54900 Arabidopsis lyrata HOM05D005773 ORTHO05D006930 4.3e-39 166.4 383 36.8
Rhsim04G0249100 Rhododendron simsii HOM05D005773 ORTHO05D006930 7.3e-39 165.6 426 38.0
Lalb_Chr13g0299011 Lupinus albus HOM05D005773 ORTHO05D006930 9.6e-39 165.2 328 39.6
A08p04910 Brassica napus HOM05D005773 ORTHO05D006930 1.3e-38 164.9 381 36.7
BolC8t47338H Brassica oleracea HOM05D005773 ORTHO05D006930 1.3e-38 164.9 381 36.5
BraA08t32517Z Brassica rapa HOM05D005773 ORTHO05D006930 1.3e-38 164.9 381 36.7
Potri.010G003200 Populus trichocarpa HOM05D005773 ORTHO05D006930 1.3e-38 164.9 383 40.7
MSTRG.13210 Avicennia marina HOM05D005773 ORTHO05D006930 2.8e-38 163.7 407 35.4
C08p05240 Brassica napus HOM05D005773 ORTHO05D006930 2.8e-38 163.7 383 36.3
Sp1g35250 Schrenkiella parvula HOM05D005773 ORTHO05D006930 3.6e-38 163.3 396 35.9
AT1G48300 Arabidopsis thaliana HOM05D005773 ORTHO05D006930 1.1e-37 161.8 384 37.0
Thhalv10011577m.g Eutrema salsugineum HOM05D005773 ORTHO05D006930 2.4e-37 160.6 392 35.5
Cfa015740 Carpinus fangiana HOM05D005773 ORTHO05D006930 6.9e-37 159.1 247 43.7
Manes.01G234700 Manihot esculenta HOM05D005773 ORTHO05D006930 7.6e-36 155.6 363 38.8
SalBow7G0248 Salvia bowleyana HOM05D005773 ORTHO05D006930 2.2e-35 154.1 342 35.1
SalBow7G4520 Salvia bowleyana HOM05D005773 ORTHO05D006930 4.9e-35 152.9 342 35.1
Cpa.g.sc146.13 Carica papaya HOM05D005773 ORTHO05D006930 8.4e-35 152.1 377 35.0
EL10Ac3g06235 Beta vulgaris HOM05D005773 ORTHO05D006930 1.9e-34 151.0 315 37.5
TPR.G12556 Trifolium pratense HOM05D005773 ORTHO05D006930 2.4e-34 150.6 390 36.7
Sc25g0002150 Simmondsia chinensis HOM05D005773 ORTHO05D006930 3.2e-34 150.2 332 37.7
ATR0796G282 Amborella trichopoda HOM05D005773 ORTHO05D006930 9.3e-34 148.7 411 35.3
COL.COLO4_23133 Corchorus olitorius HOM05D005773 ORTHO05D006930 9.3e-34 148.7 387 34.6
CDE09G0185 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 1.2e-33 148.3 310 35.2
Sabra10G0002700 Salix brachista HOM05D005773 ORTHO05D006930 2.1e-33 147.5 381 37.8
CANSAT78G1256 Cannabis sativa HOM05D005773 ORTHO05D006930 2.7e-33 147.1 386 35.0
HanXRQChr05g0148961 Helianthus annuus HOM05D005773 ORTHO05D006930 1.0e-32 145.2 379 35.1
Carub.0001s3743 Capsella rubella HOM05D005773 ORTHO05D006930 1.7e-32 144.4 386 35.0
Lj4g0014107 Lotus japonicus HOM05D005773 ORTHO05D006930 1.7e-32 144.4 325 37.2
Potri.002G187300 Populus trichocarpa HOM05D005773 ORTHO05D006930 1.7e-32 144.4 317 35.3
Lsat_1_v5_gn_6_118320 Lactuca sativa HOM05D005773 ORTHO05D006930 1.5e-31 141.4 384 36.2
Solyc12g098850.2 Solanum lycopersicum HOM05D005773 ORTHO05D006930 2.5e-31 140.6 426 34.5
Migut.H01460 Erythranthe guttata HOM05D005773 ORTHO05D006930 5.6e-31 139.4 344 32.8
Nitab4.5_0000978g0060 Nicotiana tabacum HOM05D005773 ORTHO05D006930 5.6e-31 139.4 426 31.2
PGR004G1534 Punica granatum HOM05D005773 ORTHO05D006930 5.6e-31 139.4 316 40.2
Sopen12g033600 Solanum pennellii HOM05D005773 ORTHO05D006930 7.3e-31 139.0 434 33.2
CDE02G3050 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 9.6e-31 138.7 285 34.4
Cc03_g00040 Coffea canephora HOM05D005773 ORTHO05D006930 1.6e-30 137.9 295 38.0
Aqoxy2G02494 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 4.8e-30 136.3 377 31.3
Ciclev10020833m.g Citrus clementina HOM05D005773 ORTHO05D006930 6.2e-30 136.0 367 37.3
Nitab4.5_0012375g0020 Nicotiana tabacum HOM05D005773 ORTHO05D006930 6.2e-30 136.0 360 33.6
Ah.07g203560 Amaranthus hybridus HOM05D005773 ORTHO05D006930 3.1e-29 133.7 358 33.0
BcaC07g37153 Brassica carinata HOM05D005773 ORTHO05D006930 3.1e-29 133.7 360 34.4
Hma1.2p1_1449F.1_g284070 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 4.0e-29 133.3 326 40.5
Actinidia01071 Actinidia chinensis HOM05D005773 ORTHO05D006930 6.9e-29 132.5 269 41.6
Ciclev10005574m.g Citrus clementina HOM05D005773 ORTHO05D006930 1.2e-28 131.7 312 37.8
Phvul.003G123000 Phaseolus vulgaris HOM05D005773 ORTHO05D006930 2.0e-28 131.0 381 34.4
Ca_21368_v3 Cicer arietinum L. HOM05D005773 ORTHO05D006930 5.8e-28 129.4 386 35.0
Medtr4g124080 Medicago truncatula HOM05D005773 ORTHO05D006930 7.6e-28 129.0 327 35.8
Psat0s1206g0160 Pisum sativum HOM05D005773 ORTHO05D006930 7.6e-28 129.0 382 34.3
PGSC0003DMG400004596 Solanum tuberosum HOM05D005773 ORTHO05D006930 1.7e-27 127.9 425 32.5
AUR62002540 Chenopodium quinoa HOM05D005773 ORTHO05D006930 1.1e-26 125.2 396 32.1
Eucgr.H04131 Eucalyptus grandis HOM05D005773 ORTHO05D006930 1.1e-26 125.2 380 35.3
Peaxi162Scf00323g00817 Petunia axillaris HOM05D005773 ORTHO05D006930 1.1e-26 125.2 363 35.3
VMungo1215G1523 Vigna mungo HOM05D005773 ORTHO05D006930 1.1e-26 125.2 382 34.8
SGA_v2.0_scaffold109G31080 Striga asiatica HOM05D005773 ORTHO05D006930 2.4e-26 124.0 329 33.1
CAN.G484.97 Capsicum annuum HOM05D005773 ORTHO05D006930 4.2e-26 123.2 371 33.4
Atru.chr5.865 Acer truncatum HOM05D005773 ORTHO05D006930 2.1e-25 120.9 233 36.9
Glyma.13G118300 Glycine max HOM05D005773 ORTHO05D006930 1.0e-24 118.6 382 33.2
ECA246G2714 Erigeron canadensis HOM05D005773 ORTHO05D006930 1.1e-23 115.2 312 35.3
Sed0002380 Sechium edule HOM05D005773 ORTHO05D006930 1.1e-23 115.2 383 34.7
Glyma.17G041600 Glycine max HOM05D005773 ORTHO05D006930 2.8e-22 110.5 321 34.9
arahy.Tifrunner.gnm1.ann1.YBC12K Arachis hypogaea HOM05D005773 ORTHO05D006930 5.3e-21 106.3 321 34.0
Os05g0137300 Oryza sativa ssp. japonica HOM05D005773 ORTHO05D006930 5.3e-21 106.3 197 36.5
arahy.Tifrunner.gnm1.ann1.F7JGYB Arachis hypogaea HOM05D005773 ORTHO05D006930 4.5e-20 103.2 128 46.1
Zm00001eb417470 Zea mays HOM05D005773 ORTHO05D006930 7.6e-20 102.4 91 59.3
AUR62023652 Chenopodium quinoa HOM05D005773 ORTHO05D006930 1.7e-19 101.3 386 31.6
ClCG05G006890 Citrullus lanatus HOM05D005773 ORTHO05D006930 1.7e-19 101.3 378 33.6
CsaV3_3G015560 Cucumis sativus L. HOM05D005773 ORTHO05D006930 2.9e-19 100.5 375 32.3
unitig_26.g9353 Utricularia gibba HOM05D005773 ORTHO05D006930 2.9e-19 100.5 382 28.0
Sed0009476 Sechium edule HOM05D005773 ORTHO05D006930 1.9e-18 97.8 383 33.7
MELO3C006755.2 Cucumis melo HOM05D005773 ORTHO05D006930 2.1e-17 94.4 97 48.5
arahy.Tifrunner.gnm1.ann1.9W2SDJ Arachis hypogaea HOM05D005773 ORTHO05D006930 4.6e-17 93.2 386 30.8
arahy.Tifrunner.gnm1.ann1.RWG9MN Arachis hypogaea HOM05D005773 ORTHO05D006930 7.9e-17 92.4 391 31.5
arahy.Tifrunner.gnm1.ann1.AWA2M3 Arachis hypogaea HOM05D000254 ORTHO05D000165 3.9e-16 90.1 202 36.1
Hma1.2p1_1067F.1_g253800 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 1.9e-15 87.8 407 28.7
TAR625G0572 Trochodendron aralioides HOM05D005773 ORTHO05D006930 2.8e-14 84.0 90 55.6
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 4.1e-13 80.1 143 50.3
Atru.chr4.3177 Acer truncatum HOM05D005773 ORTHO05D006930 6.9e-13 79.3 216 31.0
HPP92_012765 Vanilla planifolia HOM05D005773 ORTHO05D006930 2.6e-12 77.4 321 31.8
Cpa.g.sc57.12 Carica papaya HOM05D005773 ORTHO05D006930 1.3e-11 75.1 44 72.7
Aqoxy1G04021 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 1.4e-10 71.6 75 53.3
Aqoxy7G02275 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 1.4e-10 71.6 129 51.2
SEGI_38196 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 2.5e-10 70.9 330 30.9
SEGI_24223 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 9.3e-10 68.9 319 30.4
FAN07G1029 Fragaria x ananassa HOM05D005773 ORTHO05D006930 1.2e-09 68.6 158 38.0
CARHR041400 Cardamine hirsuta HOM05D005773 ORTHO05D006930 1.8e-08 64.7 48 58.3
arahy.Tifrunner.gnm1.ann1.EN1MLR Arachis hypogaea HOM05D005773 ORTHO05D006930 3.0e-08 63.9 294 31.3
TAR624G0439 Trochodendron aralioides HOM05D005773 ORTHO05D006930 8.7e-08 62.4 109 41.3
Atru.chr9.2474 Acer truncatum HOM05D000366 ORTHO05D001950 4.8e-06 56.6 103 36.9
Pp3c14_16980 Physcomitrium patens HOM05D029403 ORTHO05D006930 4.8e-06 56.6 99 32.3
SMO356G0556 Selaginella moellendorffii HOM05D005773 ORTHO05D006930 8.2e-06 55.8 88 34.1


User provided reference genes

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