Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 2383.6 1238 100.0
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1618.6 1266 68.0
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1420.6 1270 60.9
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1392.1 1270 59.8
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1383.2 1268 59.1
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1371.3 1268 59.0
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1342.8 1275 57.1
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1342.0 1241 59.1
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1328.9 1250 57.5
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1319.3 1268 57.4
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1315.8 1264 57.0
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1295.0 1266 56.4
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1295.0 1262 56.4
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1291.9 1270 55.6
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1290.0 1264 56.8
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1289.2 1260 56.1
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1288.9 1264 55.9
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1288.5 1266 56.5
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1281.2 1240 56.5
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1274.2 1263 55.7
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1267.7 1263 55.2
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1265.0 1235 56.8
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1261.1 1242 53.9
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1260.4 1260 54.5
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1239.6 1261 53.2
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1235.7 1260 53.0
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1230.3 1242 53.3
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1224.5 1255 54.1
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1222.6 1242 53.1
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1221.5 1257 52.5
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1220.3 1233 53.1
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1219.9 1244 53.5
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1219.5 1191 56.3
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1218.4 1255 53.4
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1218.0 1255 53.4
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1213.4 1268 52.5
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1213.0 1227 53.4
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1209.5 1254 52.2
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1206.8 1255 53.0
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1204.5 1253 54.0
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1194.1 1232 52.2
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1194.1 1265 52.0
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1193.3 1271 53.0
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1192.6 1268 51.7
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1191.4 1262 52.9
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1191.4 1263 51.9
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1190.6 1277 51.8
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1188.3 1265 52.3
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 0.0e+00 1186.4 1243 51.6
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1186.4 1252 52.3
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1184.1 1249 52.0
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1182.2 1240 51.4
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1180.6 1265 50.6
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1178.7 1269 51.4
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1177.9 1083 58.2
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 0.0e+00 1171.8 1013 61.9
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 0.0e+00 1166.4 1241 52.9
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1164.1 1211 53.1
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1161.0 1268 50.4
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1156.7 1264 51.7
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1148.3 1252 51.2
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1148.3 1221 52.4
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1144.8 1267 51.5
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1143.3 1239 51.6
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1139.0 1267 50.9
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1129.8 1247 50.4
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 0.0e+00 1128.6 1312 49.1
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1114.4 1249 50.2
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1110.1 1262 49.4
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1109.0 1191 52.7
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1106.7 1253 48.8
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1106.3 1258 49.3
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1105.5 1249 50.4
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1094.0 1250 49.0
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1093.2 1175 53.2
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1090.5 1251 48.4
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 0.0e+00 1087.0 1263 48.6
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1086.2 1253 49.0
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 0.0e+00 1083.6 1259 48.4
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 0.0e+00 1082.4 1246 49.7
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 0.0e+00 1080.1 1246 49.4
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 2.7e-300 1035.8 1264 47.4
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 5.1e-299 1031.6 1265 47.4
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 7.3e-298 1027.7 922 60.5
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 7.6e-295 1017.7 1261 47.0
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 1.5e-287 993.4 1252 46.6
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 2.1e-284 983.0 938 57.9
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 6.2e-281 971.5 870 60.1
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.1e-272 944.1 1247 44.8
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.9e-269 933.3 1215 44.7
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 6.3e-265 918.3 1051 48.0
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 6.7e-259 898.3 1217 45.4
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 8.5e-246 854.7 986 49.8
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 1.2e-244 850.9 981 49.3
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 1.3e-241 840.9 1117 42.3
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.7e-241 840.5 962 49.7
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 1.2e-236 824.3 1272 39.2
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 1.4e-227 794.3 854 52.2
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 2.4e-216 756.9 902 46.8
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 4.6e-191 672.9 802 46.3
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.3e-182 644.8 881 42.9
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 8.1e-180 635.6 570 58.9
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 3.2e-168 597.0 1163 35.6
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 2.5e-165 587.4 837 42.4
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 4.3e-157 560.1 778 41.9
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 7.4e-149 532.7 636 46.2
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 5.1e-142 510.0 427 64.6
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.1e-136 492.3 285 89.8
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 9.1e-123 446.0 640 41.6
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 3.3e-112 411.0 365 60.0
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.4e-110 405.6 656 35.8
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 1.5e-104 385.6 459 47.1
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 5.0e-97 360.5 357 58.3
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 5.6e-96 357.1 350 59.4
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 1.4e-94 352.4 348 58.9
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 2.6e-93 348.2 236 75.0
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 1.8e-78 298.9 495 35.2
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 1.9e-75 288.9 384 42.7
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 2.5e-72 278.5 491 35.6
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 4.2e-67 261.2 132 94.7
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 7.9e-66 256.9 397 37.5
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-62 245.4 340 38.5
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 3.4e-53 214.9 299 41.5
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 2.1e-47 195.7 381 37.8
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 2.5e-43 182.2 312 38.1
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 3.4e-29 135.2 169 43.8
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 5.2e-25 121.3 345 28.4
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 1.7e-20 106.3 203 37.4
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 7.0e-14 84.3 61 65.6
Zm00001eb060820 Zea mays HOM05D000726 ORTHO05D007554 7.0e-14 84.3 142 33.8
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 1.3e-12 80.1 116 35.3
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 2.9e-12 79.0 140 32.1
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 5.0e-12 78.2 140 32.1
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 6.5e-12 77.8 119 33.6


User provided reference genes

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