Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 6.4e-72 273.9 127 100.0
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 9.0e-26 120.6 69 85.5
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 2.9e-24 115.5 68 82.4
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 4.9e-24 114.8 68 79.4
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 4.2e-23 111.7 69 78.3
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 2.7e-22 109.0 70 78.6
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 2.7e-22 109.0 69 79.7
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 3.5e-22 108.6 68 77.9
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 3.5e-22 108.6 68 77.9
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 3.5e-22 108.6 68 77.9
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 6.0e-22 107.8 68 76.5
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 1.3e-21 106.7 71 74.6
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 1.8e-21 106.3 71 77.5
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 3.0e-21 105.5 72 72.2
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 3.9e-21 105.1 71 76.1
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 5.1e-21 104.8 72 76.4
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 6.7e-21 104.4 70 78.6
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 6.7e-21 104.4 71 74.6
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 8.7e-21 104.0 71 73.2
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 1.5e-20 103.2 74 73.0
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 1.5e-20 103.2 71 78.9
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 2.5e-20 102.4 71 70.4
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 7.4e-20 100.9 78 70.5
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 7.4e-20 100.9 72 70.8
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 7.4e-20 100.9 73 72.6
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 7.4e-20 100.9 73 68.5
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 9.7e-20 100.5 68 72.1
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 1.6e-19 99.8 71 67.6
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 1.6e-19 99.8 71 71.8
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 2.8e-19 99.0 72 73.6
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 2.8e-19 99.0 72 75.0
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 3.7e-19 98.6 73 68.5
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 3.7e-19 98.6 70 72.9
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 4.8e-19 98.2 69 69.6
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 4.8e-19 98.2 70 71.4
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 4.8e-19 98.2 69 73.9
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 1.1e-18 97.1 72 72.2
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.4e-18 96.7 68 73.5
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 2.4e-18 95.9 75 66.7
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 3.1e-18 95.5 70 70.0
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 4.1e-18 95.1 73 64.4
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 5.3e-18 94.7 72 69.4
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 6.9e-18 94.4 65 80.0
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 6.9e-18 94.4 70 74.3
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 6.9e-18 94.4 70 70.0
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 9.0e-18 94.0 75 65.3
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 1.2e-17 93.6 75 66.7
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 1.5e-17 93.2 73 71.2
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 2.6e-17 92.4 70 67.1
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 2.6e-17 92.4 73 64.4
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 2.6e-17 92.4 70 67.1
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 3.4e-17 92.0 70 67.1
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 3.4e-17 92.0 70 67.1
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 4.5e-17 91.7 72 65.3
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 5.9e-17 91.3 64 76.6
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 1.0e-16 90.5 72 66.7
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 1.0e-16 90.5 75 64.0
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 1.3e-16 90.1 66 65.2
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 1.7e-16 89.7 74 66.2
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 2.2e-16 89.4 73 64.4
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 2.2e-16 89.4 79 62.0
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 3.8e-16 88.6 64 68.8
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 3.8e-16 88.6 67 73.1
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 3.8e-16 88.6 73 65.8
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 6.5e-16 87.8 74 67.6
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 6.5e-16 87.8 66 72.7
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 6.5e-16 87.8 64 73.4
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 1.4e-15 86.7 69 60.9
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 1.9e-15 86.3 77 55.8
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 1.9e-15 86.3 69 60.9
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 1.9e-15 86.3 68 61.8
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 2.5e-15 85.9 68 64.7
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.5e-15 85.9 67 73.1
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 3.2e-15 85.5 74 63.5
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 4.2e-15 85.1 70 58.6
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 5.5e-15 84.7 80 58.8
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 7.2e-15 84.3 64 70.3
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 1.6e-14 83.2 67 61.2
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 2.1e-14 82.8 83 56.6
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 2.1e-14 82.8 63 65.1
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.7e-14 82.4 67 70.1
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 2.7e-14 82.4 64 65.6
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 3.6e-14 82.0 61 72.1
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 6.1e-14 81.3 77 58.4
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 6.1e-14 81.3 73 64.4
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 6.1e-14 81.3 73 64.4
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 6.1e-14 81.3 73 64.4
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 6.1e-14 81.3 64 65.6
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.0e-13 80.5 73 64.4
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 1.0e-13 80.5 67 64.2
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 3.0e-13 79.0 82 53.7
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.1e-12 77.0 67 58.2
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 1.1e-12 77.0 91 53.8
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 1.1e-12 77.0 85 50.6
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 1.5e-12 76.6 86 52.3
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.9e-12 76.3 69 56.5
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.9e-12 76.3 67 58.2
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.5e-12 75.9 69 56.5
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 3.3e-12 75.5 84 51.2
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 3.3e-12 75.5 70 55.7
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 3.3e-12 75.5 56 73.2
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 4.3e-12 75.1 70 55.7
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 4.3e-12 75.1 73 54.8
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 4.3e-12 75.1 73 54.8
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 4.3e-12 75.1 66 63.6
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 5.7e-12 74.7 72 54.2
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 5.7e-12 74.7 72 54.2
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 7.4e-12 74.3 69 55.1
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 7.4e-12 74.3 69 55.1
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 7.4e-12 74.3 69 55.1
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 7.4e-12 74.3 69 55.1
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 7.4e-12 74.3 69 55.1
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 7.4e-12 74.3 69 55.1
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 9.7e-12 73.9 69 55.1
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 9.7e-12 73.9 73 53.4
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 9.7e-12 73.9 69 53.6
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 9.7e-12 73.9 73 53.4
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 9.7e-12 73.9 73 53.4
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 9.7e-12 73.9 69 53.6
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 9.7e-12 73.9 69 53.6
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 9.7e-12 73.9 73 53.4
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 9.7e-12 73.9 66 63.6
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 9.7e-12 73.9 73 53.4
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 1.3e-11 73.6 74 52.7
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.3e-11 73.6 74 52.7
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.3e-11 73.6 74 52.7
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.7e-11 73.2 72 52.8
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.7e-11 73.2 73 53.4
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 1.7e-11 73.2 75 56.0
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 2.2e-11 72.8 72 52.8
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 2.2e-11 72.8 76 51.3
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 2.2e-11 72.8 69 53.6
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 2.2e-11 72.8 69 53.6
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 2.2e-11 72.8 69 53.6
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 2.2e-11 72.8 69 53.6
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 2.2e-11 72.8 69 53.6
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 3.7e-11 72.0 69 53.6
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 3.7e-11 72.0 69 53.6
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 4.8e-11 71.6 73 52.1
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 4.8e-11 71.6 73 52.1
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 4.8e-11 71.6 73 52.1
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 4.8e-11 71.6 73 52.1
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 4.8e-11 71.6 73 52.1
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 4.8e-11 71.6 73 52.1
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 4.8e-11 71.6 78 57.7
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 4.8e-11 71.6 76 48.7
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 1.1e-10 70.5 65 61.5
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 1.8e-10 69.7 80 51.2
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 2.0e-09 66.2 47 68.1
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 4.5e-09 65.1 77 50.6
Zm00001eb354550 Zea mays HOM05D004817 ORTHO05D005790 1.9e-07 59.7 95 41.1


User provided reference genes

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