Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25269 Nelumbo nucifera HOM05D005353 ORTHO05D006248 5.6e-40 167.2 84 100.0
MBI18_g03863_MAGBIO Magnolia biondii HOM05D005353 ORTHO05D006248 6.8e-22 107.1 75 69.3
Nitab4.5_0000019g0100 Nicotiana tabacum HOM05D005353 ORTHO05D006248 2.9e-20 101.7 80 66.2
Actinidia39944 Actinidia chinensis HOM05D005353 ORTHO05D006248 1.1e-19 99.8 73 68.5
Manes.12G155100 Manihot esculenta HOM05D005353 ORTHO05D006248 1.1e-19 99.8 78 62.8
Nitab4.5_0007722g0010 Nicotiana tabacum HOM05D005353 ORTHO05D006248 3.2e-19 98.2 79 63.3
Dinv29491 Davidia involucrata HOM05D005353 ORTHO05D006248 1.2e-18 96.3 75 70.7
TWI73G0458 Tripterygium wilfordii HOM05D005353 ORTHO05D006248 1.6e-18 95.9 73 63.0
CAN.G1337.25 Capsicum annuum HOM05D005353 ORTHO05D006248 6.0e-18 94.0 83 61.4
Peaxi162Scf00322g00917 Petunia axillaris HOM05D005353 ORTHO05D006248 1.0e-17 93.2 80 58.8
CSS0044252 Camellia sinensis var. sinensis HOM05D005353 ORTHO05D006248 1.3e-17 92.8 70 64.3
Lalb_Chr12g0200451 Lupinus albus HOM05D005353 ORTHO05D006248 1.3e-17 92.8 75 60.0
Hund17553 Selenicereus undatus HOM05D005353 ORTHO05D006248 1.7e-17 92.4 75 68.0
Cc04_g14300 Coffea canephora HOM05D005353 ORTHO05D006248 2.3e-17 92.0 75 64.0
Potri.010G004600 Populus trichocarpa HOM05D005353 ORTHO05D006248 3.0e-17 91.7 73 60.3
Lj6A705T54 Lonicera japonica HOM05D005353 ORTHO05D006248 3.9e-17 91.3 73 61.6
Rhsim02G0049500 Rhododendron simsii HOM05D005353 ORTHO05D006248 5.1e-17 90.9 72 62.5
HanXRQChr05g0148921 Helianthus annuus HOM05D005353 ORTHO05D006248 6.6e-17 90.5 75 64.0
Gohir.D08G248600 Gossypium hirsutum HOM05D005353 ORTHO05D006248 1.9e-16 89.0 72 62.5
Oeu002498.1 Olea europaea HOM05D005353 ORTHO05D006248 1.9e-16 89.0 72 65.3
Thecc.08G167300 Theobroma cacao HOM05D005353 ORTHO05D006248 1.9e-16 89.0 73 60.3
Gohir.A08G228300 Gossypium hirsutum HOM05D005353 ORTHO05D006248 2.5e-16 88.6 72 61.1
Prupe.1G209100 Prunus persica HOM05D005353 ORTHO05D006248 2.5e-16 88.6 79 58.2
Gorai.004G265200 Gossypium raimondii HOM05D005353 ORTHO05D006248 3.3e-16 88.2 72 62.5
Peaxi162Scf01347g00135 Petunia axillaris HOM05D005353 ORTHO05D006248 3.3e-16 88.2 78 59.0
CiPaw.02G068200 Carya illinoinensis HOM05D005353 ORTHO05D006248 5.6e-16 87.4 75 58.7
Sopen05g013630 Solanum pennellii HOM05D005353 ORTHO05D006248 9.5e-16 86.7 73 60.3
Sabra10G0004000 Salix brachista HOM05D005353 ORTHO05D006248 1.2e-15 86.3 73 58.9
Solyc05g016380.4 Solanum lycopersicum HOM05D005353 ORTHO05D006248 1.2e-15 86.3 73 58.9
PGSC0003DMG401013561 Solanum tuberosum HOM05D005353 ORTHO05D006248 1.2e-15 86.3 77 61.0
QL06p014836 Quercus lobata HOM05D005353 ORTHO05D006248 1.6e-15 85.9 78 59.0
Solyc07g042930.3 Solanum lycopersicum HOM05D005353 ORTHO05D006248 1.6e-15 85.9 78 60.3
COL.COLO4_25111 Corchorus olitorius HOM05D005353 ORTHO05D006248 2.1e-15 85.5 71 60.6
MD13G1136300 Malus domestica HOM05D005353 ORTHO05D006248 2.1e-15 85.5 79 58.2
Hma1.2p1_1067F.1_g253910 Hydrangea macrophylla HOM05D005353 ORTHO05D006248 2.8e-15 85.1 74 60.8
Sopen07g022530 Solanum pennellii HOM05D005353 ORTHO05D006248 2.8e-15 85.1 78 60.3
Duzib116G0935 Durio zibethinus HOM05D005353 ORTHO05D006248 6.2e-15 84.0 64 62.5
Sc10g0003710 Simmondsia chinensis HOM05D005353 ORTHO05D006248 6.2e-15 84.0 79 59.5
Ciclev10021112m.g Citrus clementina HOM05D005353 ORTHO05D006248 1.4e-14 82.8 79 58.2
ECA246G2061 Erigeron canadensis HOM05D005353 ORTHO05D006248 1.4e-14 82.8 75 57.3
PGSC0003DMG400037053 Solanum tuberosum HOM05D005353 ORTHO05D006248 2.4e-14 82.0 73 57.5
GSVIVG01017718001 Vitis vinifera HOM05D005353 ORTHO05D006248 3.1e-14 81.6 76 57.9
MSTRG.14933 Avicennia marina HOM05D005353 ORTHO05D006248 6.8e-14 80.5 72 58.3
EL10Ac1g01664 Beta vulgaris HOM05D005353 ORTHO05D006248 8.9e-14 80.1 75 60.0
RcHm_v2.0_Chr4g0428081 Rosa chinensis HOM05D005353 ORTHO05D006248 8.9e-14 80.1 79 55.7
THA.LOC104821816 Tarenaya hassleriana HOM05D005353 ORTHO05D006248 8.9e-14 80.1 84 50.0
Lj2g0027327 Lotus japonicus HOM05D005353 ORTHO05D006248 1.2e-13 79.7 77 58.4
Eucgr.H04153 Eucalyptus grandis HOM05D005353 ORTHO05D006248 1.5e-13 79.3 75 56.0
PSO761G0146 Papaver somniferum HOM05D005353 ORTHO05D006248 2.0e-13 79.0 85 57.6
AUR62034345 Chenopodium quinoa HOM05D005353 ORTHO05D006248 2.6e-13 78.6 73 63.0
AUR62022362 Chenopodium quinoa HOM05D005353 ORTHO05D006248 3.4e-13 78.2 73 63.0
Atru.chr4.3195 Acer truncatum HOM05D005353 ORTHO05D006248 4.4e-13 77.8 72 58.3
Aqoxy2G00444 Aquilegia oxysepala HOM05D005353 ORTHO05D006248 4.4e-13 77.8 72 63.9
PGR004G1856 Punica granatum HOM05D005353 ORTHO05D006248 4.4e-13 77.8 72 59.7
CARHR092930 Cardamine hirsuta HOM05D005353 ORTHO05D006248 5.8e-13 77.4 75 49.3
AL3G30690 Arabidopsis lyrata HOM05D005353 ORTHO05D006248 1.3e-12 76.3 75 50.7
Carub.0003s1733 Capsella rubella HOM05D005353 ORTHO05D006248 1.3e-12 76.3 75 50.7
vmacro15495 Vaccinium macrocarpon HOM05D005353 ORTHO05D006248 1.3e-12 76.3 72 56.9
BcaB04g20833 Brassica carinata HOM05D005353 ORTHO05D006248 1.7e-12 75.9 77 50.6
FAN07G1699 Fragaria x ananassa HOM05D005353 ORTHO05D006248 2.2e-12 75.5 79 53.2
arahy.Tifrunner.gnm1.ann1.XSBG43 Arachis hypogaea HOM05D005353 ORTHO05D006248 2.9e-12 75.1 78 50.0
FAN17G0053 Fragaria x ananassa HOM05D005353 ORTHO05D006248 2.9e-12 75.1 79 53.2
Haze_00741 Corylus avellana HOM05D005353 ORTHO05D006248 3.8e-12 74.7 79 55.7
Aa31LG8G4490 Aethionema arabicum HOM05D005353 ORTHO05D006248 4.9e-12 74.3 74 52.7
AT3G17611 Arabidopsis thaliana HOM05D005353 ORTHO05D006248 4.9e-12 74.3 75 49.3
arahy.Tifrunner.gnm1.ann1.ETFP64 Arachis hypogaea HOM05D005353 ORTHO05D006248 4.9e-12 74.3 78 50.0
BcaC09g48719 Brassica carinata HOM05D005353 ORTHO05D006248 4.9e-12 74.3 77 49.4
C01p46630 Brassica napus HOM05D005353 ORTHO05D006248 4.9e-12 74.3 77 49.4
Cfa015762 Carpinus fangiana HOM05D005353 ORTHO05D006248 4.9e-12 74.3 79 54.4
FvH4_4g21840 Fragaria vesca HOM05D005353 ORTHO05D006248 4.9e-12 74.3 79 51.9
Lsat_1_v5_gn_0_37861 Lactuca sativa HOM05D005353 ORTHO05D006248 4.9e-12 74.3 79 50.6
TPR.G12683 Trifolium pratense HOM05D005353 ORTHO05D006248 6.4e-12 73.9 81 55.6
Thhalv10021096m.g Eutrema salsugineum HOM05D005353 ORTHO05D006248 1.1e-11 73.2 75 49.3
Sp3g15750 Schrenkiella parvula HOM05D005353 ORTHO05D006248 1.1e-11 73.2 75 49.3
FAN12G4199 Fragaria x ananassa HOM05D005353 ORTHO05D006248 1.4e-11 72.8 79 50.6
CsaV3_4G030510 Cucumis sativus L. HOM05D005353 ORTHO05D006248 2.4e-11 72.0 70 55.7
Medtr4g123573 Medicago truncatula HOM05D005353 ORTHO05D006248 2.4e-11 72.0 80 52.5
SGA_v2.0_scaffold73G24528 Striga asiatica HOM05D005353 ORTHO05D006248 2.4e-11 72.0 80 51.2
A01p36730 Brassica napus HOM05D005353 ORTHO05D006248 3.2e-11 71.6 77 48.1
C05p48760 Brassica napus HOM05D005353 ORTHO05D006248 3.2e-11 71.6 70 50.0
BolC1t04628H Brassica oleracea HOM05D005353 ORTHO05D006248 3.2e-11 71.6 76 48.7
BolC5t33612H Brassica oleracea HOM05D005353 ORTHO05D006248 3.2e-11 71.6 70 50.0
SHI11368 Sapria himalayana HOM05D005353 ORTHO05D006248 3.2e-11 71.6 65 55.4
Cpa.g.sc146.5 Carica papaya HOM05D005353 ORTHO05D006248 5.4e-11 70.9 80 53.8
CANSAT78G1361 Cannabis sativa HOM05D005353 ORTHO05D006248 9.2e-11 70.1 81 58.0
MELO3C008914.2 Cucumis melo HOM05D005353 ORTHO05D006248 9.2e-11 70.1 70 54.3
ATR0796G336 Amborella trichopoda HOM05D005353 ORTHO05D006248 1.2e-10 69.7 77 55.8
BcaC05g28769 Brassica carinata HOM05D005353 ORTHO05D006248 1.2e-10 69.7 71 47.9
Psat4g020440 Pisum sativum HOM05D005353 ORTHO05D006248 1.2e-10 69.7 81 51.9
SEGI_40739 Sequoiadendron giganteum HOM05D005353 ORTHO05D006248 1.2e-10 69.7 88 53.4
BraA01t03734Z Brassica rapa HOM05D005353 ORTHO05D006248 2.1e-10 68.9 76 47.4
DCAR_023424 Daucus carota HOM05D005353 ORTHO05D006248 2.7e-10 68.6 80 50.0
BcaB06g25831 Brassica carinata HOM05D005353 ORTHO05D006248 4.6e-10 67.8 77 49.4
SalBow7G1146 Salvia bowleyana HOM05D005353 ORTHO05D006248 4.6e-10 67.8 81 49.4
BraA05t22052Z Brassica rapa HOM05D005353 ORTHO05D006248 7.8e-10 67.0 77 48.1
Ca_21356_v3 Cicer arietinum L. HOM05D005353 ORTHO05D006248 1.0e-09 66.6 87 48.3
HPP92_012759 Vanilla planifolia HOM05D005353 ORTHO05D006248 1.7e-09 65.9 73 53.4
A05p32220 Brassica napus HOM05D005353 ORTHO05D006248 2.3e-09 65.5 76 46.1
VMungo1215G2294 Vigna mungo HOM05D005353 ORTHO05D006248 3.0e-09 65.1 75 48.0
CAN.G357.8 Capsicum annuum HOM05D005353 ORTHO05D006248 6.6e-09 63.9 71 49.3
ClCG04G002200 Citrullus lanatus HOM05D005353 ORTHO05D006248 8.7e-09 63.5 55 58.2
Glyma.17G043300 Glycine max HOM05D005353 ORTHO05D006248 8.7e-09 63.5 74 45.9
Zm00001eb332500 Zea mays HOM05D005353 ORTHO05D006248 8.7e-09 63.5 77 48.1
Glyma.13G116600 Glycine max HOM05D005353 ORTHO05D006248 1.5e-08 62.8 74 47.3
Os01g0283500 Oryza sativa ssp. japonica HOM05D005353 ORTHO05D006248 1.9e-08 62.4 83 44.6
Sed0018181 Sechium edule HOM05D005353 ORTHO05D006248 2.5e-08 62.0 57 54.4
Phvul.003G125100 Phaseolus vulgaris HOM05D005353 ORTHO05D006248 3.3e-08 61.6 75 44.0
Zm00001eb227080 Zea mays HOM05D005353 ORTHO05D006248 1.6e-07 59.3 79 44.3
Cfa015759 Carpinus fangiana HOM05D005353 ORTHO05D006248 2.1e-07 58.9 81 49.4
Haze_00742 Corylus avellana HOM05D005353 ORTHO05D006248 3.6e-07 58.2 63 49.2
Pp3c15_4650 Physcomitrium patens HOM05D005353 ORTHO05D006248 3.6e-07 58.2 92 41.3
Migut.M00009 Erythranthe guttata HOM05D005353 ORTHO05D006248 1.1e-06 56.6 82 39.0


User provided reference genes

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