Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25160 Nelumbo nucifera HOM05D003456 ORTHO05D004082 1.5e-19 98.6 53 100.0
Nn1g02816 Nelumbo nucifera HOM05D003456 ORTHO05D004082 2.9e-18 94.4 53 92.5
Nn5g30493 Nelumbo nucifera HOM05D003456 ORTHO05D004082 1.6e-16 88.6 53 84.9
Nn7g36891 Nelumbo nucifera HOM05D003456 ORTHO05D276653 6.9e-12 73.2 63 68.3
Nn6g32206 Nelumbo nucifera HOM05D004495 ORTHO05D005361 1.3e-10 68.9 45 82.2
Nn2g14150 Nelumbo nucifera HOM05D003456 ORTHO05D004082 6.4e-10 66.6 60 61.7
Dinv09618 Davidia involucrata HOM05D003456 ORTHO05D004082 1.1e-09 65.9 58 65.5
Manes.09G055901 Manihot esculenta HOM05D003456 ORTHO05D004082 1.4e-09 65.5 56 66.1
TAR636G2922 Trochodendron aralioides HOM05D003456 ORTHO05D004082 1.4e-09 65.5 58 63.8
CDE02G3384 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 4.2e-09 63.9 58 63.8
Hma1.2p1_0232F.1_g097840 Hydrangea macrophylla HOM05D003456 ORTHO05D004082 5.5e-09 63.5 58 60.3
Ciclev10013682m.g Citrus clementina HOM05D003456 ORTHO05D004082 1.2e-08 62.4 60 55.0
TAR633G0109 Trochodendron aralioides HOM05D003456 ORTHO05D004082 1.2e-08 62.4 58 58.6
GSVIVG01033834001 Vitis vinifera HOM05D003456 ORTHO05D004082 1.2e-08 62.4 58 60.3
AUR62023392 Chenopodium quinoa HOM05D003456 ORTHO05D004082 1.6e-08 62.0 60 58.3
Dinv21215 Davidia involucrata HOM05D003456 ORTHO05D004082 2.1e-08 61.6 58 58.6
Nn6g34911 Nelumbo nucifera HOM05D003456 ORTHO05D004082 2.7e-08 61.2 60 56.7
Aqoxy2G01205 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 3.5e-08 60.8 58 58.6
TWI53G1385 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 3.5e-08 60.8 56 58.9
AUR62013762 Chenopodium quinoa HOM05D003456 ORTHO05D004082 6.0e-08 60.1 60 56.7
PGR044G1450 Punica granatum HOM05D003456 ORTHO05D004082 6.0e-08 60.1 58 58.6
MD14G1022300 Malus domestica HOM05D003456 ORTHO05D004082 7.9e-08 59.7 57 57.9
CSS0039541 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 1.0e-07 59.3 57 57.9
PSO151G0153 Papaver somniferum HOM05D003456 ORTHO05D004082 1.0e-07 59.3 59 59.3
PSO170G1366 Papaver somniferum HOM05D003456 ORTHO05D004082 1.0e-07 59.3 58 60.3
PSO407G0116 Papaver somniferum HOM05D003456 ORTHO05D004082 1.0e-07 59.3 58 60.3
A03p45960 Brassica napus HOM05D003456 ORTHO05D004082 1.8e-07 58.5 57 56.1
MD12G1035500 Malus domestica HOM05D003456 ORTHO05D004082 1.8e-07 58.5 57 59.6
Oeu054399.2 Olea europaea HOM05D003456 ORTHO05D004082 1.8e-07 58.5 58 55.2
Prupe.7G111000 Prunus persica HOM05D003456 ORTHO05D004082 1.8e-07 58.5 56 58.9
AT2G16710 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 2.3e-07 58.2 57 56.1
PSO339G3466 Papaver somniferum HOM05D003456 ORTHO05D004082 2.3e-07 58.2 58 58.6
AL3G49380 Arabidopsis lyrata HOM05D003456 ORTHO05D004082 3.0e-07 57.8 57 54.4
BcaC04g23009 Brassica carinata HOM05D003456 ORTHO05D004082 3.0e-07 57.8 57 54.4
A09p11090 Brassica napus HOM05D003456 ORTHO05D004082 3.0e-07 57.8 57 54.4
BraA09t36751Z Brassica rapa HOM05D003456 ORTHO05D004082 3.0e-07 57.8 57 54.4
Duzib128G1248 Durio zibethinus HOM05D003456 ORTHO05D004082 3.0e-07 57.8 58 56.9
BcaC01g02994 Brassica carinata HOM05D003456 ORTHO05D004082 3.9e-07 57.4 57 54.4
C03p57360 Brassica napus HOM05D003456 ORTHO05D004082 3.9e-07 57.4 57 54.4
BolC3t18012H Brassica oleracea HOM05D003456 ORTHO05D004082 3.9e-07 57.4 57 54.4
BraA03t13724Z Brassica rapa HOM05D003456 ORTHO05D004082 3.9e-07 57.4 57 54.4
Sp3g30040 Schrenkiella parvula HOM05D003456 ORTHO05D004082 3.9e-07 57.4 57 54.4
vmacro10309 Vaccinium macrocarpon HOM05D003456 ORTHO05D004082 3.9e-07 57.4 53 58.5
CARHR106940 Cardamine hirsuta HOM05D003456 ORTHO05D004082 5.1e-07 57.0 57 54.4
QL04p044862 Quercus lobata HOM05D003456 ORTHO05D004082 5.1e-07 57.0 58 53.4
Actinidia31104 Actinidia chinensis HOM05D003456 ORTHO05D004082 6.7e-07 56.6 57 56.1
ECA233G4183 Erigeron canadensis HOM05D003456 ORTHO05D004082 6.7e-07 56.6 55 58.2
Carub.0001s3604 Capsella rubella HOM05D003456 ORTHO05D004082 8.7e-07 56.2 57 52.6
Carub.0003s3046 Capsella rubella HOM05D003456 ORTHO05D004082 8.7e-07 56.2 57 52.6
CiPaw.13G039000 Carya illinoinensis HOM05D003456 ORTHO05D004082 8.7e-07 56.2 58 53.4
CDE11G1238 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 8.7e-07 56.2 53 58.5
ClCG05G018420 Citrullus lanatus HOM05D003456 ORTHO05D004082 8.7e-07 56.2 58 56.9
Oeu024811.2 Olea europaea HOM05D003456 ORTHO05D004082 8.7e-07 56.2 58 55.2
Atru.chr8.1550 Acer truncatum HOM05D003456 ORTHO05D004082 1.1e-06 55.8 57 56.1
Actinidia34723 Actinidia chinensis HOM05D003456 ORTHO05D004082 1.1e-06 55.8 57 54.4
EL10Ac1g00743 Beta vulgaris HOM05D003456 ORTHO05D004082 1.1e-06 55.8 60 53.3
ClCG05G021780 Citrullus lanatus HOM05D003456 ORTHO05D004082 1.1e-06 55.8 58 55.2
MELO3C012350.2 Cucumis melo HOM05D003456 ORTHO05D004082 1.1e-06 55.8 58 53.4
Cfa016601 Carpinus fangiana HOM05D003456 ORTHO05D004082 1.5e-06 55.5 58 60.3
RcHm_v2.0_Chr6g0270521 Rosa chinensis HOM05D003456 ORTHO05D004082 1.5e-06 55.5 56 53.6
Ca_08885_v3 Cicer arietinum L. HOM05D003456 ORTHO05D004082 1.9e-06 55.1 56 53.6
Os12g0485500 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 1.9e-06 55.1 58 50.0
Sc09g0005350 Simmondsia chinensis HOM05D003456 ORTHO05D004082 1.9e-06 55.1 58 53.4
TWI74G0284 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 1.9e-06 55.1 56 55.4
Hund06781 Selenicereus undatus HOM05D003456 ORTHO05D004082 2.5e-06 54.7 58 55.2
Thhalv10022903m.g Eutrema salsugineum HOM05D003456 ORTHO05D004082 3.3e-06 54.3 57 52.6
Psat6g013760 Pisum sativum HOM05D003456 ORTHO05D004082 3.3e-06 54.3 56 55.4
TPR.G9901 Trifolium pratense HOM05D003456 ORTHO05D004082 3.3e-06 54.3 56 55.4
Aqoxy1G03742 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 4.3e-06 53.9 58 51.7
Aqoxy3G02826 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 4.3e-06 53.9 58 51.7
Ciclev10017146m.g Citrus clementina HOM05D003456 ORTHO05D004082 4.3e-06 53.9 55 54.5
Haze_19603 Corylus avellana HOM05D003456 ORTHO05D004082 4.3e-06 53.9 58 58.6
Eucgr.J00259 Eucalyptus grandis HOM05D003456 ORTHO05D004082 4.3e-06 53.9 58 55.2
arahy.Tifrunner.gnm1.ann1.P2449T Arachis hypogaea HOM05D003456 ORTHO05D004082 5.6e-06 53.5 56 55.4
Gohir.D04G100300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 5.6e-06 53.5 58 53.4
Gorai.009G403300 Gossypium raimondii HOM05D003456 ORTHO05D004082 5.6e-06 53.5 58 53.4
Nitab4.5_0001725g0170 Nicotiana tabacum HOM05D003456 ORTHO05D004082 5.6e-06 53.5 57 50.9
Nitab4.5_0005483g0040 Nicotiana tabacum HOM05D003456 ORTHO05D004082 5.6e-06 53.5 57 50.9
Rhsim03G0097900 Rhododendron simsii HOM05D003456 ORTHO05D004082 5.6e-06 53.5 57 54.4
BcaB08g34660 Brassica carinata HOM05D003456 ORTHO05D004082 7.4e-06 53.1 56 53.6
HanXRQChr08g0217241 Helianthus annuus HOM05D003456 ORTHO05D004082 7.4e-06 53.1 57 54.4
Hund22272 Selenicereus undatus HOM05D003456 ORTHO05D004082 7.4e-06 53.1 59 54.2
VMungo1383G3423 Vigna mungo HOM05D003456 ORTHO05D004082 7.4e-06 53.1 56 53.6
BcaB07g31755 Brassica carinata HOM05D003456 ORTHO05D004082 9.6e-06 52.8 52 53.8
Psat4g110960 Pisum sativum HOM05D003456 ORTHO05D004082 9.6e-06 52.8 56 53.6
Potri.008G020400 Populus trichocarpa HOM05D003456 ORTHO05D004082 9.6e-06 52.8 57 52.6
Solyc09g009440.3 Solanum lycopersicum HOM05D003456 ORTHO05D004082 9.6e-06 52.8 61 50.8
Sopen09g004180 Solanum pennellii HOM05D003456 ORTHO05D004082 9.6e-06 52.8 61 50.8


User provided reference genes

Program Settings