Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 8.5e-148 526.9 259 100.0
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 3.2e-102 375.6 264 70.1
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 1.5e-99 366.7 256 70.3
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 1.9e-99 366.3 256 70.7
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 4.3e-99 365.2 250 68.4
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 1.2e-98 363.6 256 68.8
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 2.0e-96 356.3 256 66.4
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 3.4e-96 355.5 255 67.8
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 4.4e-96 355.1 256 67.2
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 9.9e-96 354.0 265 65.3
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 1.7e-95 353.2 238 71.0
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 2.9e-95 352.4 259 65.6
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 6.4e-95 351.3 250 66.4
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 2.7e-93 345.9 252 65.5
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 3.5e-93 345.5 268 64.6
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 7.8e-93 344.4 249 66.3
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 3.9e-92 342.0 243 67.1
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 5.1e-92 341.7 247 64.8
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 5.1e-92 341.7 246 66.3
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 6.6e-92 341.3 258 62.0
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 1.1e-91 340.5 245 66.9
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 1.1e-91 340.5 244 66.4
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 1.1e-91 340.5 244 66.4
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 1.5e-91 340.1 253 64.0
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 2.5e-91 339.3 253 62.8
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 3.3e-91 339.0 254 63.8
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 3.3e-91 339.0 272 61.8
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 4.3e-91 338.6 257 61.9
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 5.6e-91 338.2 254 63.0
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 7.3e-91 337.8 249 66.3
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 9.6e-91 337.4 247 64.4
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 9.6e-91 337.4 256 63.7
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 2.1e-90 336.3 245 64.1
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 2.8e-90 335.9 258 63.6
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 2.8e-90 335.9 248 66.1
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 6.2e-90 334.7 269 63.6
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 8.1e-90 334.3 253 62.1
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 1.4e-89 333.6 244 62.7
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 3.1e-89 332.4 237 67.9
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 4.0e-89 332.0 255 63.1
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 4.0e-89 332.0 265 61.9
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 5.3e-89 331.6 253 61.3
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 6.9e-89 331.3 248 61.7
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 9.0e-89 330.9 236 67.8
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 9.0e-89 330.9 255 63.5
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.2e-88 330.5 230 68.3
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 1.5e-88 330.1 249 63.1
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 3.4e-88 328.9 247 65.2
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 4.4e-88 328.6 253 61.3
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 5.8e-88 328.2 254 62.2
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 9.9e-88 327.4 269 61.0
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.2e-87 326.2 269 59.9
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 2.2e-87 326.2 270 59.6
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 2.9e-87 325.9 277 57.4
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 6.4e-87 324.7 269 58.7
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 5.4e-86 321.6 267 58.8
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 2.1e-85 319.7 255 60.4
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 2.1e-85 319.7 238 65.5
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 3.5e-85 318.9 255 62.7
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 4.6e-85 318.5 247 61.5
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 4.6e-85 318.5 249 61.8
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 6.0e-85 318.2 256 59.8
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 6.0e-85 318.2 274 57.7
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 2.1e-82 309.7 268 57.8
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 3.6e-82 308.9 248 62.9
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 4.0e-81 305.4 264 59.5
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 4.5e-80 302.0 264 58.7
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 7.6e-80 301.2 233 60.1
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 7.6e-80 301.2 242 61.6
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 9.9e-80 300.8 232 63.4
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 2.2e-79 299.7 251 61.0
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 3.2e-78 295.8 249 59.4
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 4.2e-78 295.4 253 60.9
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.8e-76 290.0 209 69.9
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 6.7e-76 288.1 272 58.5
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 3.3e-75 285.8 252 55.2
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 7.4e-75 284.6 253 58.5
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 1.4e-73 280.4 241 59.8
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 9.0e-73 277.7 206 66.5
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 7.6e-72 274.6 249 54.2
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 9.9e-72 274.2 240 57.1
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 3.8e-71 272.3 196 64.3
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 1.1e-70 270.8 247 56.7
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 1.9e-70 270.0 244 57.0
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 4.2e-70 268.9 241 52.7
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 7.9e-69 264.6 391 40.7
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 7.9e-69 264.6 207 64.3
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 5.6e-67 258.5 208 58.7
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 2.5e-62 243.0 200 59.5
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.2e-62 242.3 268 50.0
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.2e-62 242.3 268 50.0
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 2.5e-59 233.0 252 48.8
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 7.4e-59 231.5 206 53.9
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 6.9e-57 224.9 149 69.8
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 7.7e-56 221.5 263 47.9
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 2.1e-53 213.4 189 58.7
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 7.9e-53 211.5 152 63.8
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 5.1e-52 208.8 152 62.5
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 8.2e-50 201.4 235 46.4
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 1.1e-49 201.1 206 52.4
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 5.3e-49 198.7 165 58.8
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 3.2e-46 189.5 153 60.8
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 3.9e-44 182.6 125 66.4
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 8.8e-44 181.4 148 60.1
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 1.5e-43 180.6 241 45.6
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 2.8e-42 176.4 134 61.9
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 3.7e-42 176.0 138 58.0
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 6.3e-42 175.3 138 58.0
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 1.1e-41 174.5 121 66.9
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 1.4e-41 174.1 116 69.0
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 5.3e-41 172.2 138 57.2
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 5.3e-41 172.2 138 57.2
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 2.5e-38 163.3 124 58.1
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 1.2e-37 161.0 131 61.8
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 7.0e-33 145.2 282 35.5
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 5.0e-31 139.0 93 69.9
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.5e-30 137.5 139 49.6
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 8.0e-29 131.7 317 30.3
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 8.0e-29 131.7 113 56.6
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 4.4e-27 125.9 122 51.6
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 6.3e-26 122.1 71 74.6
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 1.1e-25 121.3 97 62.9
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 1.6e-24 117.5 103 55.3
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 9.4e-22 108.2 103 50.5
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 3.6e-21 106.3 100 50.0
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 4.7e-21 105.9 95 54.7
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 1.2e-19 101.3 68 63.2
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-19 100.9 166 38.0
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 4.4e-19 99.4 76 57.9
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 1.3e-18 97.8 55 76.4
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 3.0e-12 76.6 66 53.0
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 2.0e-08 63.9 41 75.6
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.1e-06 58.2 33 78.8


User provided reference genes

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