Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 2.5e-81 305.4 158 100.0
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 2.2e-74 282.3 158 91.8
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 4.2e-65 251.5 164 79.3
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 1.0e-63 246.9 163 77.9
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 8.8e-63 243.8 160 76.9
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 4.4e-62 241.5 164 75.6
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 9.7e-62 240.4 165 76.4
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 3.7e-61 238.4 165 73.9
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 3.7e-61 238.4 158 80.4
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.8e-60 236.1 161 77.6
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 1.8e-60 236.1 159 78.6
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 4.1e-60 235.0 169 74.6
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 5.3e-60 234.6 159 76.7
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 5.3e-60 234.6 158 75.3
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 1.6e-59 233.0 164 73.2
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 3.5e-59 231.9 164 72.6
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 3.5e-59 231.9 163 73.6
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 4.5e-59 231.5 161 73.3
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 4.5e-59 231.5 161 73.3
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 5.9e-59 231.1 161 76.4
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 7.7e-59 230.7 166 72.3
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 1.0e-58 230.3 157 77.1
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 1.3e-58 229.9 158 77.2
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 2.9e-58 228.8 158 73.4
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 3.8e-58 228.4 165 73.3
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 5.0e-58 228.0 163 74.8
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 5.0e-58 228.0 165 73.9
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 6.5e-58 227.6 160 75.0
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 8.5e-58 227.3 159 73.6
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 1.1e-57 226.9 158 72.2
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 2.5e-57 225.7 166 71.7
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 9.4e-57 223.8 160 71.9
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 9.4e-57 223.8 161 73.9
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 1.2e-56 223.4 164 72.6
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 1.6e-56 223.0 158 72.2
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 1.6e-56 223.0 163 71.8
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 2.1e-56 222.6 159 73.0
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.1e-56 222.6 165 69.1
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.1e-56 222.6 165 69.1
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 2.7e-56 222.2 163 71.8
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 4.7e-56 221.5 166 71.1
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 6.1e-56 221.1 159 72.3
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 6.1e-56 221.1 158 69.0
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 8.0e-56 220.7 165 70.9
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 8.0e-56 220.7 163 71.8
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 8.0e-56 220.7 163 71.2
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 1.0e-55 220.3 164 72.0
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.8e-55 219.5 165 70.3
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.8e-55 219.5 165 70.3
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 2.3e-55 219.2 158 67.7
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 2.3e-55 219.2 157 71.3
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 3.0e-55 218.8 159 72.3
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 6.7e-55 217.6 162 69.8
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 1.1e-54 216.9 160 68.8
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 2.6e-54 215.7 159 70.4
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 2.6e-54 215.7 156 69.2
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 2.6e-54 215.7 160 67.5
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 2.6e-54 215.7 165 70.3
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 2.6e-54 215.7 162 67.3
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 2.6e-54 215.7 160 69.4
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 3.3e-54 215.3 167 70.1
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 5.7e-54 214.5 155 73.5
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 5.7e-54 214.5 155 73.5
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 5.7e-54 214.5 164 65.2
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 9.7e-54 213.8 167 66.5
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 1.7e-53 213.0 168 69.0
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 2.2e-53 212.6 163 69.3
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 2.8e-53 212.2 158 71.5
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 3.7e-53 211.8 162 66.7
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 4.8e-53 211.5 167 66.5
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 4.8e-53 211.5 162 67.9
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 6.3e-53 211.1 162 70.4
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 6.3e-53 211.1 160 71.2
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 6.3e-53 211.1 161 70.8
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 6.3e-53 211.1 162 68.5
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 6.3e-53 211.1 162 68.5
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 8.2e-53 210.7 160 70.0
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 8.2e-53 210.7 160 70.0
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 8.2e-53 210.7 155 72.9
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 8.2e-53 210.7 158 71.5
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 1.4e-52 209.9 155 68.4
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 1.4e-52 209.9 151 69.5
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 1.8e-52 209.5 163 67.5
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 2.4e-52 209.1 163 69.9
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 3.1e-52 208.8 158 63.9
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 7.0e-52 207.6 164 67.1
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 2.0e-51 206.1 160 68.1
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 2.7e-51 205.7 155 66.5
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 4.5e-51 204.9 157 66.9
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 4.5e-51 204.9 155 65.8
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 5.9e-51 204.5 163 68.1
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 5.9e-51 204.5 160 66.2
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 5.9e-51 204.5 156 67.9
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 7.7e-51 204.1 167 65.9
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 1.0e-50 203.8 163 65.0
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 1.3e-50 203.4 156 67.3
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 3.8e-50 201.8 164 67.7
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 3.8e-50 201.8 162 63.6
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 6.5e-50 201.1 158 67.7
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 1.5e-49 199.9 160 67.5
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 1.9e-49 199.5 160 65.0
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 1.9e-49 199.5 157 68.8
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 1.9e-49 199.5 156 69.2
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 1.6e-48 196.4 143 72.7
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 5.2e-47 191.4 119 76.5
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 6.8e-47 191.0 118 72.0
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 8.3e-45 184.1 136 70.6
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 1.7e-42 176.4 151 63.6
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 1.5e-41 173.3 147 63.9
Gohir.A07G196200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 3.7e-37 158.7 91 81.3
Pp3c2_31000 Physcomitrium patens HOM05D006548 ORTHO05D008064 8.3e-37 157.5 150 52.7
AagrBONN_evm.TU.Sc2ySwM_362.984 Anthoceros agrestis HOM05D006548 ORTHO05D008064 3.4e-30 135.6 158 46.2
Ciclev10013747m.g Citrus clementina HOM05D006548 ORTHO05D008064 3.4e-30 135.6 82 79.3
CDE12G0850 Ceratophyllum demersum HOM05D006548 ORTHO05D008064 4.9e-29 131.7 77 74.0
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 5.0e-26 121.7 106 65.1
Mapoly0085s0036 Marchantia polymorpha HOM05D006548 ORTHO05D008064 1.9e-25 119.8 129 45.7
C03p67920 Brassica napus HOM05D006548 ORTHO05D008064 1.2e-24 117.1 90 65.6
BcaC01g02172 Brassica carinata HOM05D006548 ORTHO05D008064 8.0e-24 114.4 90 64.4
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 8.6e-18 94.4 170 45.3
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 2.0e-14 83.2 100 51.0
BolC3t19017H Brassica oleracea HOM05D006548 ORTHO05D008064 4.4e-14 82.0 49 77.6
BraA03t13759Z Brassica rapa HOM05D006548 ORTHO05D008064 2.2e-13 79.7 49 77.6
CBR_g34314 Chara braunii HOM05D006548 ORTHO05D008064 4.9e-13 78.6 125 35.2
Mapoly0113s0043 Marchantia polymorpha HOM05D006548 ORTHO05D008064 3.6e-08 62.4 131 30.5


User provided reference genes

Program Settings