Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25119 Nelumbo nucifera HOM05D006149 ORTHO05D007341 3.1e-69 265.4 174 100.0
Nn1g04703 Nelumbo nucifera HOM05D006149 ORTHO05D007341 3.1e-61 238.8 175 92.6
Dinv42191 Davidia involucrata HOM05D006149 ORTHO05D007341 1.6e-49 199.9 131 80.9
Dinv15763 Davidia involucrata HOM05D006149 ORTHO05D007341 3.6e-49 198.7 134 78.4
TAR628G0594 Trochodendron aralioides HOM05D006149 ORTHO05D007341 1.0e-48 197.2 123 82.9
Lj9A321G81 Lonicera japonica HOM05D006149 ORTHO05D007341 4.8e-46 188.3 131 75.6
Hund06318 Selenicereus undatus HOM05D006149 ORTHO05D007341 1.4e-45 186.8 139 74.1
Ca_11076_v3 Cicer arietinum L. HOM05D006149 ORTHO05D007341 7.0e-45 184.5 122 81.1
VMungo0720G1566 Vigna mungo HOM05D006149 ORTHO05D007341 9.1e-45 184.1 123 80.5
Potri.001G300300 Populus trichocarpa HOM05D006149 ORTHO05D007341 2.6e-44 182.6 121 81.0
Glyma.20G128800 Glycine max HOM05D006149 ORTHO05D007341 4.5e-44 181.8 122 81.1
Sabra09G0073900 Salix brachista HOM05D006149 ORTHO05D007341 4.5e-44 181.8 121 81.0
AUR62039082 Chenopodium quinoa HOM05D006149 ORTHO05D007341 7.7e-44 181.0 134 71.6
COL.COLO4_32597 Corchorus olitorius HOM05D006149 ORTHO05D007341 7.7e-44 181.0 124 77.4
Lj5g0003815 Lotus japonicus HOM05D006149 ORTHO05D007341 1.0e-43 180.6 123 80.5
Gohir.A03G186300 Gossypium hirsutum HOM05D006149 ORTHO05D007341 2.2e-43 179.5 120 79.2
vmacro19450 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 5.0e-43 178.3 122 75.4
TWI34G0529 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 8.5e-43 177.6 125 79.2
arahy.Tifrunner.gnm1.ann1.0F7AFP Arachis hypogaea HOM05D006149 ORTHO05D007341 1.5e-42 176.8 164 73.8
Phvul.007G040000 Phaseolus vulgaris HOM05D006149 ORTHO05D007341 1.5e-42 176.8 123 78.0
unitig_22.g5723 Utricularia gibba HOM05D006149 ORTHO05D007341 1.5e-42 176.8 133 72.9
TWI32G0763 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 2.5e-42 176.0 121 79.3
Cpa.g.sc76.22 Carica papaya HOM05D006149 ORTHO05D007341 3.2e-42 175.6 129 76.0
Cfa004575 Carpinus fangiana HOM05D006149 ORTHO05D007341 3.2e-42 175.6 120 80.0
Gohir.D02G207100 Gossypium hirsutum HOM05D006149 ORTHO05D007341 3.2e-42 175.6 118 78.8
Gorai.005G235000 Gossypium raimondii HOM05D006149 ORTHO05D007341 3.2e-42 175.6 118 78.8
arahy.Tifrunner.gnm1.ann1.GUMB1Z Arachis hypogaea HOM05D006149 ORTHO05D007341 4.2e-42 175.3 164 72.6
Lsat_1_v5_gn_9_111221 Lactuca sativa HOM05D006149 ORTHO05D007341 9.4e-42 174.1 135 71.9
Rhsim05G0088300 Rhododendron simsii HOM05D006149 ORTHO05D007341 1.6e-41 173.3 124 75.0
Manes.10G076500 Manihot esculenta HOM05D006149 ORTHO05D007341 2.7e-41 172.6 118 78.0
Nitab4.5_0005392g0090 Nicotiana tabacum HOM05D006149 ORTHO05D007341 4.7e-41 171.8 126 73.8
Sopen01g049800 Solanum pennellii HOM05D006149 ORTHO05D007341 4.7e-41 171.8 124 74.2
PGSC0003DMG400025768 Solanum tuberosum HOM05D006149 ORTHO05D007341 4.7e-41 171.8 124 74.2
SGA_v2.0_scaffold225G43080 Striga asiatica HOM05D006149 ORTHO05D007341 8.0e-41 171.0 127 73.2
Medtr1g107435 Medicago truncatula HOM05D006149 ORTHO05D007341 1.0e-40 170.6 121 77.7
Rhsim11G0160200 Rhododendron simsii HOM05D006149 ORTHO05D007341 1.0e-40 170.6 176 57.4
PGR142G0815 Punica granatum HOM05D006149 ORTHO05D007341 1.4e-40 170.2 122 76.2
PSO675G5876 Papaver somniferum HOM05D006149 ORTHO05D007341 1.8e-40 169.9 130 69.2
Nitab4.5_0002815g0010 Nicotiana tabacum HOM05D006149 ORTHO05D007341 2.3e-40 169.5 126 72.2
Solyc01g107610.4 Solanum lycopersicum HOM05D006149 ORTHO05D007341 3.0e-40 169.1 124 73.4
Sc08g0001390 Simmondsia chinensis HOM05D006149 ORTHO05D007341 4.0e-40 168.7 134 72.4
MELO3C019546.2 Cucumis melo HOM05D006149 ORTHO05D007341 5.2e-40 168.3 122 77.0
CSS0036049 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 6.7e-40 167.9 126 73.0
Thecc.02G107700 Theobroma cacao HOM05D006149 ORTHO05D007341 6.7e-40 167.9 108 80.6
Psat6g219120 Pisum sativum HOM05D006149 ORTHO05D007341 8.8e-40 167.5 116 79.3
CsaV3_3G018210 Cucumis sativus L. HOM05D006149 ORTHO05D007341 1.2e-39 167.2 122 76.2
PSO541G1364 Papaver somniferum HOM05D006149 ORTHO05D007341 1.2e-39 167.2 128 70.3
CDE02G2507 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.5e-39 166.8 122 76.2
CDE02G4185 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.5e-39 166.8 122 76.2
Glyma.10G262200 Glycine max HOM05D006149 ORTHO05D007341 2.6e-39 166.0 116 75.9
CANSAT25G3711 Cannabis sativa HOM05D006149 ORTHO05D007341 3.3e-39 165.6 130 72.3
ECA240G2462 Erigeron canadensis HOM05D006149 ORTHO05D007341 3.3e-39 165.6 139 71.2
ATR0618G054 Amborella trichopoda HOM05D006149 ORTHO05D007341 4.4e-39 165.2 123 74.0
CAN.G1231.7 Capsicum annuum HOM05D006149 ORTHO05D007341 4.4e-39 165.2 127 70.9
MSTRG.16714 Avicennia marina HOM05D006149 ORTHO05D007341 5.7e-39 164.9 138 69.6
Duzib052G0317 Durio zibethinus HOM05D006149 ORTHO05D007341 5.7e-39 164.9 119 75.6
Actinidia27971 Actinidia chinensis HOM05D006149 ORTHO05D007341 1.7e-38 163.3 114 75.4
HanXRQChr03g0070291 Helianthus annuus HOM05D006149 ORTHO05D007341 1.7e-38 163.3 140 68.6
Migut.B00388 Erythranthe guttata HOM05D006149 ORTHO05D007341 2.2e-38 162.9 139 66.9
Sabra16G0188500 Salix brachista HOM05D006149 ORTHO05D007341 3.7e-38 162.2 170 57.6
MD05G1089500 Malus domestica HOM05D006149 ORTHO05D007341 8.2e-38 161.0 125 70.4
Aqoxy3G02908 Aquilegia oxysepala HOM05D006149 ORTHO05D007341 1.8e-37 159.8 134 67.9
Sed0001717 Sechium edule HOM05D006149 ORTHO05D007341 1.8e-37 159.8 116 75.9
RcHm_v2.0_Chr6g0255351 Rosa chinensis HOM05D006149 ORTHO05D007341 5.3e-37 158.3 118 74.6
CDE04G1609 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 7.0e-37 157.9 122 73.8
SalBow6G4084 Salvia bowleyana HOM05D006149 ORTHO05D007341 9.1e-37 157.5 136 66.2
THA.LOC104807242 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 1.2e-36 157.1 122 68.9
ClCG05G010280 Citrullus lanatus HOM05D006149 ORTHO05D007341 2.7e-36 156.0 115 75.7
HPP92_004777 Vanilla planifolia HOM05D006149 ORTHO05D007341 2.7e-36 156.0 139 66.9
AUR62010304 Chenopodium quinoa HOM05D006149 ORTHO05D007341 4.5e-36 155.2 112 72.3
Prupe.8G134800 Prunus persica HOM05D006149 ORTHO05D007341 4.5e-36 155.2 114 73.7
Oeu017469.1 Olea europaea HOM05D006149 ORTHO05D007341 7.7e-36 154.5 120 71.7
FAN20G0990 Fragaria x ananassa HOM05D006149 ORTHO05D007341 1.3e-35 153.7 125 70.4
QL11p033743 Quercus lobata HOM05D006149 ORTHO05D007341 1.3e-35 153.7 155 61.9
Lalb_Chr21g0308351 Lupinus albus HOM05D006149 ORTHO05D007341 2.2e-35 152.9 114 72.8
Ciclev10029393m.g Citrus clementina HOM05D006149 ORTHO05D007341 1.5e-34 150.2 116 69.8
Sed0008540 Sechium edule HOM05D006149 ORTHO05D007341 1.5e-34 150.2 108 75.9
MD05G1088900 Malus domestica HOM05D006149 ORTHO05D007341 1.9e-34 149.8 178 52.8
Thhalv10022867m.g Eutrema salsugineum HOM05D006149 ORTHO05D007341 7.2e-34 147.9 99 73.7
AL3G46990 Arabidopsis lyrata HOM05D006149 ORTHO05D007341 2.7e-33 146.0 98 74.5
FAN27G1351 Fragaria x ananassa HOM05D000289 ORTHO05D007341 2.7e-33 146.0 119 68.9
Sp3g28510 Schrenkiella parvula HOM05D006149 ORTHO05D007341 2.7e-33 146.0 98 73.5
FvH4_2g05220 Fragaria vesca HOM05D006149 ORTHO05D007341 6.1e-33 144.8 119 68.1
FAN15G1894 Fragaria x ananassa HOM05D006149 ORTHO05D007341 6.1e-33 144.8 119 68.1
FAN24G0478 Fragaria x ananassa HOM05D000289 ORTHO05D007341 6.1e-33 144.8 119 68.1
Peaxi162Scf00016g02334 Petunia axillaris HOM05D006149 ORTHO05D007341 6.1e-33 144.8 125 68.0
Os09g0104300 Oryza sativa ssp. japonica HOM05D006149 ORTHO05D007341 8.0e-33 144.4 87 83.9
SHI05287 Sapria himalayana HOM05D006149 ORTHO05D007341 8.0e-33 144.4 96 77.1
Aa31LG8G13110 Aethionema arabicum HOM05D006149 ORTHO05D007341 1.8e-32 143.3 93 76.3
BcaB03g16271 Brassica carinata HOM05D006149 ORTHO05D007341 5.2e-32 141.7 95 73.7
Eucgr.E02957 Eucalyptus grandis HOM05D006149 ORTHO05D007341 6.8e-32 141.4 119 67.2
BcaB08g34585 Brassica carinata HOM05D006149 ORTHO05D007341 8.8e-32 141.0 98 71.4
vmacro02004 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 8.8e-32 141.0 159 54.7
BcaC06g36046 Brassica carinata HOM05D006149 ORTHO05D007341 1.5e-31 140.2 124 62.1
THA.LOC104819555 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 1.5e-31 140.2 82 86.6
BcaC04g22139 Brassica carinata HOM05D006149 ORTHO05D007341 2.0e-31 139.8 124 61.3
C07p08530 Brassica napus HOM05D006149 ORTHO05D007341 2.0e-31 139.8 124 61.3
BolC7t41265H Brassica oleracea HOM05D006149 ORTHO05D007341 2.0e-31 139.8 124 61.3
DCAR_001643 Daucus carota HOM05D006149 ORTHO05D007341 2.0e-31 139.8 96 76.0
Pp3c2_21780 Physcomitrium patens HOM05D006149 ORTHO05D007341 4.4e-31 138.7 141 60.3
EL10Ac9g22279 Beta vulgaris HOM05D006149 ORTHO05D007341 5.7e-31 138.3 140 57.9
Duzib248G1531 Durio zibethinus HOM05D006149 ORTHO05D007341 7.5e-31 137.9 124 66.1
CiPaw.05G011400 Carya illinoinensis HOM05D006149 ORTHO05D007341 1.7e-30 136.7 105 71.4
CARHR105640 Cardamine hirsuta HOM05D006149 ORTHO05D007341 2.2e-30 136.3 92 75.0
AT2G15270 Arabidopsis thaliana HOM05D006149 ORTHO05D007341 2.8e-30 136.0 91 74.7
A07p05350 Brassica napus HOM05D006149 ORTHO05D007341 3.7e-30 135.6 91 73.6
BraA07t28328Z Brassica rapa HOM05D006149 ORTHO05D007341 3.7e-30 135.6 91 73.6
Carub.0003s2910 Capsella rubella HOM05D006149 ORTHO05D007341 8.3e-30 134.4 89 75.3
SEGI_00829 Sequoiadendron giganteum HOM05D006149 ORTHO05D007341 3.1e-29 132.5 126 62.7
Zm00001eb393310 Zea mays HOM05D006149 ORTHO05D007341 4.1e-29 132.1 78 84.6
AagrBONN_evm.TU.Sc2ySwM_228.2976 Anthoceros agrestis HOM05D006149 ORTHO05D007341 9.1e-29 131.0 126 56.3
HanXRQChr02g0033021 Helianthus annuus HOM05D006149 ORTHO05D007341 1.6e-28 130.2 118 66.1
Zm00001eb020500 Zea mays HOM05D006149 ORTHO05D007341 4.5e-28 128.6 76 84.2
CANSAT25G0333 Cannabis sativa HOM05D006149 ORTHO05D007341 8.6e-27 124.4 118 62.7
SMO364G0740 Selaginella moellendorffii HOM05D006149 ORTHO05D007341 1.5e-26 123.6 128 58.6
TAR376G0787 Trochodendron aralioides HOM05D006149 ORTHO05D007341 3.3e-26 122.5 77 83.1
Pp3c1_15220 Physcomitrium patens HOM05D006149 ORTHO05D007341 2.8e-25 119.4 136 57.4
CBR_g44544 Chara braunii HOM05D006149 ORTHO05D007341 1.4e-24 117.1 128 54.7
Mapoly0056s0071 Marchantia polymorpha HOM05D006149 ORTHO05D007341 5.7e-23 111.7 116 56.0
Actinidia05494 Actinidia chinensis HOM05D006149 ORTHO05D007341 1.3e-22 110.5 77 72.7
Haze_10168 Corylus avellana HOM05D006149 ORTHO05D007341 1.4e-21 107.1 241 36.1
CSS0028016 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 9.2e-21 104.4 89 64.0
Ciclev10006213m.g Citrus clementina HOM05D006149 ORTHO05D007341 9.2e-21 104.4 102 56.9
PGR042G0697 Punica granatum HOM05D006149 ORTHO05D007341 4.5e-20 102.1 105 58.1
MBI12_g27878_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 4.7e-17 92.0 91 60.4
Ah.01g018230 Amaranthus hybridus HOM05D006149 ORTHO05D007341 4.4e-15 85.5 137 46.0
Cre03.g193150 Chlamydomonas reinhardtii HOM05D006149 ORTHO05D007341 1.4e-13 80.5 112 46.4
QL11p033903 Quercus lobata HOM05D006149 ORTHO05D007341 4.6e-12 75.5 46 84.8
SMO197G0096 Selaginella moellendorffii HOM05D024641 ORTHO05D007341 2.8e-09 66.2 84 51.2
Thecc.04G122800 Theobroma cacao HOM05D006149 ORTHO05D007341 3.1e-08 62.8 42 73.8
MBI03_g28533_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 6.8e-08 61.6 78 51.3
MCO08G345 Micromonas commoda HOM05D006149 ORTHO05D007341 1.7e-06 57.0 120 35.0
Lsat_1_v5_gn_5_63380 Lactuca sativa HOM05D000113 ORTHO05D012184 2.2e-06 56.6 48 60.4


User provided reference genes

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