Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 5.9e-64 247.3 117 100.0
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 5.2e-44 181.0 138 67.4
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.8e-29 132.1 133 54.9
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 8.6e-23 110.5 127 44.9
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 1.1e-22 110.2 124 49.2
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 9.5e-22 107.1 126 47.6
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 1.6e-21 106.3 134 44.8
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 3.6e-21 105.1 131 45.8
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 4.7e-21 104.8 127 43.3
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 1.8e-20 102.8 127 44.9
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 1.8e-20 102.8 124 44.4
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 4.0e-20 101.7 135 42.2
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 5.2e-20 101.3 133 46.6
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 6.8e-20 100.9 126 44.4
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.5e-19 99.8 136 41.2
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 2.0e-19 99.4 128 43.0
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 3.4e-19 98.6 128 41.4
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 3.4e-19 98.6 139 45.3
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 3.4e-19 98.6 123 40.7
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 3.4e-19 98.6 123 40.7
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 4.4e-19 98.2 138 42.8
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 7.5e-19 97.4 122 44.3
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 9.8e-19 97.1 126 40.5
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 9.8e-19 97.1 140 45.0
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 1.7e-18 96.3 119 42.0
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 1.7e-18 96.3 123 39.8
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 1.7e-18 96.3 123 39.8
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 1.7e-18 96.3 123 39.8
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.2e-18 95.9 125 44.8
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 2.9e-18 95.5 138 43.5
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 3.7e-18 95.1 123 40.7
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 3.7e-18 95.1 123 40.7
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 4.9e-18 94.7 138 43.5
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 4.9e-18 94.7 138 43.5
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 4.9e-18 94.7 138 43.5
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 6.4e-18 94.4 139 41.7
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 8.3e-18 94.0 138 43.5
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 8.3e-18 94.0 128 39.8
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 3.2e-17 92.0 139 40.3
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 5.4e-17 91.3 125 43.2
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 7.0e-17 90.9 128 39.8
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 7.0e-17 90.9 125 42.4
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 2.1e-16 89.4 124 42.7
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 4.6e-16 88.2 122 41.0
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.0e-15 87.0 125 43.2
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 1.0e-15 87.0 139 39.6
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 1.7e-15 86.3 123 39.0
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 1.7e-15 86.3 134 41.8
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 2.3e-15 85.9 123 39.0
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.0e-15 85.5 125 41.6
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 6.6e-15 84.3 120 40.0
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.1e-14 83.6 130 41.5
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 7.3e-14 80.9 139 38.1
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 7.3e-14 80.9 128 39.1
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 7.3e-14 80.9 127 37.0
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.8e-13 79.0 132 41.7
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 2.8e-13 79.0 132 41.7
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 2.8e-13 79.0 123 37.4
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.7e-13 78.2 132 40.2
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 1.1e-12 77.0 138 37.7
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 1.4e-12 76.6 123 36.6
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 1.8e-12 76.3 126 38.1
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 4.0e-12 75.1 95 41.1
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 1.2e-11 73.6 129 37.2
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.5e-11 73.2 142 34.5
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 2.0e-11 72.8 144 36.1
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 2.6e-11 72.4 115 40.9
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 3.4e-11 72.0 97 40.2
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 3.4e-11 72.0 134 35.1
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 4.4e-11 71.6 97 40.2
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 4.4e-11 71.6 97 40.2
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 7.5e-11 70.9 135 37.0
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 1.3e-10 70.1 130 34.6
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.3e-10 70.1 98 39.8
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 1.7e-10 69.7 101 38.6
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 1.7e-10 69.7 101 38.6
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 2.2e-10 69.3 146 36.3
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 3.7e-10 68.6 121 35.5
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 3.7e-10 68.6 121 35.5
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 3.7e-10 68.6 132 34.8
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 4.9e-10 68.2 129 34.1
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 6.4e-10 67.8 98 45.9
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 6.4e-10 67.8 67 55.2
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 1.1e-09 67.0 142 34.5
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.4e-09 66.6 123 36.6
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 1.4e-09 66.6 89 44.9
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 1.9e-09 66.2 118 36.4
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 2.4e-09 65.9 69 52.2
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 2.4e-09 65.9 148 31.1
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 3.2e-09 65.5 102 36.3
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 3.2e-09 65.5 119 38.7
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 3.2e-09 65.5 146 36.3
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 4.1e-09 65.1 132 34.8
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 4.1e-09 65.1 143 33.6
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 7.1e-09 64.3 98 39.8
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 7.1e-09 64.3 145 33.1
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 9.2e-09 63.9 149 36.2
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 1.2e-08 63.5 126 34.1
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.2e-08 63.5 125 38.4
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.2e-08 63.5 129 33.3
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 1.6e-08 63.2 122 40.2
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 1.6e-08 63.2 141 33.3
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 2.7e-08 62.4 118 33.1
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 3.5e-08 62.0 132 37.9
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 7.8e-08 60.8 120 35.0
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 1.0e-07 60.5 96 41.7
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 1.3e-07 60.1 122 36.9
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 1.3e-07 60.1 74 52.7
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.3e-07 60.1 113 36.3
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.7e-07 59.7 143 32.2
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 3.9e-07 58.5 132 37.1
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 3.9e-07 58.5 122 34.4
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 5.1e-07 58.2 137 32.8
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 5.1e-07 58.2 137 32.8
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 5.1e-07 58.2 137 32.8
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 5.1e-07 58.2 134 35.8
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 5.1e-07 58.2 127 32.3
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 6.6e-07 57.8 125 35.2
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 8.6e-07 57.4 117 34.2
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 8.6e-07 57.4 94 39.4
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 1.1e-06 57.0 131 34.4
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.1e-06 57.0 122 31.1
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 1.5e-06 56.6 111 35.1
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 1.5e-06 56.6 83 38.6
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 1.5e-06 56.6 73 46.6
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 1.9e-06 56.2 100 36.0
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.9e-06 56.2 95 42.1
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 4.3e-06 55.1 111 36.0
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 4.3e-06 55.1 63 50.8
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 5.6e-06 54.7 122 35.2
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 7.3e-06 54.3 105 36.2
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 9.5e-06 53.9 85 36.5
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 9.5e-06 53.9 130 33.8


User provided reference genes

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