Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25083 Nelumbo nucifera HOM05D000087 ORTHO05D030209 2.7e-83 312.0 160 100.0
Nn5g28455 Nelumbo nucifera HOM05D000087 ORTHO05D002585 2.3e-58 229.2 157 79.0
Nn3g21657 Nelumbo nucifera HOM05D000087 ORTHO05D030209 5.2e-55 218.0 144 84.7
Nn2g12663 Nelumbo nucifera HOM05D000087 ORTHO05D274444 2.9e-45 185.7 159 66.7
Nn1g08942 Nelumbo nucifera HOM05D000087 ORTHO05D002585 7.1e-36 154.5 150 57.3
Nn2g10255 Nelumbo nucifera HOM05D000087 ORTHO05D030209 1.1e-31 140.6 78 91.0
TAR623G1462 Trochodendron aralioides HOM05D000087 ORTHO05D002585 8.1e-24 114.4 152 46.1
TAR369G0098 Trochodendron aralioides HOM05D000087 ORTHO05D002585 5.3e-23 111.7 163 42.3
TAR376G0139 Trochodendron aralioides HOM05D000087 ORTHO05D002585 1.7e-21 106.7 153 42.5
Nn2g11234 Nelumbo nucifera HOM05D000087 ORTHO05D002585 2.5e-20 102.8 154 41.6
ClCG11G006660 Citrullus lanatus HOM05D000087 ORTHO05D002585 3.2e-20 102.4 137 42.3
MBI05_g35177_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D002585 5.5e-20 101.7 151 42.4
Cfa001424 Carpinus fangiana HOM05D000087 ORTHO05D002585 2.1e-19 99.8 154 42.9
Haze_17119 Corylus avellana HOM05D000087 ORTHO05D002585 3.5e-19 99.0 141 43.3
Aqoxy6G00292 Aquilegia oxysepala HOM05D000087 ORTHO05D002585 4.6e-19 98.6 146 43.2
LjContig00141g0015060 Lotus japonicus HOM05D000087 ORTHO05D002585 1.0e-18 97.4 152 40.8
Actinidia02919 Actinidia chinensis HOM05D000087 ORTHO05D002585 1.1e-17 94.0 159 39.0
TWI38G2263 Tripterygium wilfordii HOM05D000087 ORTHO05D002585 1.5e-17 93.6 153 41.2
PSO339G2585 Papaver somniferum HOM05D000087 ORTHO05D002585 9.6e-17 90.9 153 36.6
CsaV3_6G001350 Cucumis sativus L. HOM05D000087 ORTHO05D002585 2.1e-16 89.7 143 38.5
Lj1C943G10 Lonicera japonica HOM05D000087 ORTHO05D002585 2.1e-16 89.7 150 38.7
Lj8C79T5 Lonicera japonica HOM05D000087 ORTHO05D002585 3.7e-16 89.0 143 37.1
Thecc.10G039400 Theobroma cacao HOM05D000087 ORTHO05D002585 3.7e-16 89.0 143 37.8
CANSAT56G2358 Cannabis sativa HOM05D000087 ORTHO05D002585 6.2e-16 88.2 153 37.9
Hma1.2p1_0039F.1_g024520 Hydrangea macrophylla HOM05D000087 ORTHO05D002585 6.2e-16 88.2 168 35.7
THA.LOC104808601 Tarenaya hassleriana HOM05D000087 ORTHO05D002585 6.2e-16 88.2 146 42.5
TWI15G0400 Tripterygium wilfordii HOM05D000087 ORTHO05D002585 8.2e-16 87.8 155 38.1
AT5G06050 Arabidopsis thaliana HOM05D000087 ORTHO05D002585 1.8e-15 86.7 147 39.5
MSTRG.8275 Avicennia marina HOM05D000087 ORTHO05D002585 2.4e-15 86.3 151 37.1
Actinidia33958 Actinidia chinensis HOM05D000087 ORTHO05D002585 3.1e-15 85.9 143 36.4
MBI14_g32123_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D002585 3.1e-15 85.9 158 39.9
QL08p061339 Quercus lobata HOM05D000087 ORTHO05D002585 3.1e-15 85.9 158 38.0
MELO3C023888.2 Cucumis melo HOM05D000087 ORTHO05D002585 5.3e-15 85.1 147 40.1
PSO384G3510 Papaver somniferum HOM05D000087 ORTHO05D002585 5.3e-15 85.1 143 37.8
CSS0048971 Camellia sinensis var. sinensis HOM05D000258 ORTHO05D000153 6.9e-15 84.7 143 39.9
CiPaw.01G291500 Carya illinoinensis HOM05D000087 ORTHO05D002585 6.9e-15 84.7 158 38.0
Glyma.18G034800 Glycine max HOM05D000087 ORTHO05D002585 6.9e-15 84.7 145 36.6
PSO513G0085 Papaver somniferum HOM05D000087 ORTHO05D002585 6.9e-15 84.7 172 33.7
Phvul.001G236300 Phaseolus vulgaris HOM05D000087 ORTHO05D002585 6.9e-15 84.7 142 33.8
AL6G15980 Arabidopsis lyrata HOM05D000087 ORTHO05D002585 9.0e-15 84.3 147 38.1
BraA10t45074Z Brassica rapa HOM05D000087 ORTHO05D002585 9.0e-15 84.3 128 43.0
VMungo1383G2154 Vigna mungo HOM05D000087 ORTHO05D002585 9.0e-15 84.3 148 35.1
Aqoxy2G02340 Aquilegia oxysepala HOM05D000087 ORTHO05D002585 1.2e-14 84.0 153 38.6
CARHR207180 Cardamine hirsuta HOM05D000087 ORTHO05D002585 1.5e-14 83.6 148 37.8
Gohir.D04G064500 Gossypium hirsutum HOM05D000087 ORTHO05D002585 1.5e-14 83.6 127 37.8
Gorai.012G072300 Gossypium raimondii HOM05D000087 ORTHO05D002585 1.5e-14 83.6 136 36.8
PSO339G3648 Papaver somniferum HOM05D000087 ORTHO05D002585 1.5e-14 83.6 138 39.1
THA.LOC104810045 Tarenaya hassleriana HOM05D000087 ORTHO05D002585 1.5e-14 83.6 153 40.5
MELO3C008236.2 Cucumis melo HOM05D000087 ORTHO05D002585 2.0e-14 83.2 143 36.4
Gohir.D10G234800 Gossypium hirsutum HOM05D000087 ORTHO05D002585 2.0e-14 83.2 151 35.1
PGSC0003DMG400027137 Solanum tuberosum HOM05D000087 ORTHO05D002585 2.0e-14 83.2 156 36.5
TPR.G10329 Trifolium pratense HOM05D000087 ORTHO05D002585 2.0e-14 83.2 149 36.2
Atru.chr12.361 Acer truncatum HOM05D000087 ORTHO05D002585 2.6e-14 82.8 123 39.0
Atru.chr12.378 Acer truncatum HOM05D000087 ORTHO05D002585 2.6e-14 82.8 123 39.0
Sed0009848 Sechium edule HOM05D000087 ORTHO05D002585 3.4e-14 82.4 154 37.0
Rhsim04G0099900 Rhododendron simsii HOM05D000087 ORTHO05D002585 4.5e-14 82.0 113 42.5
Sed0027798 Sechium edule HOM05D000087 ORTHO05D002585 4.5e-14 82.0 146 37.0
Duzib106G0748 Durio zibethinus HOM05D000087 ORTHO05D002585 5.8e-14 81.6 142 34.5
MD01G1139400 Malus domestica HOM05D000087 ORTHO05D002585 5.8e-14 81.6 148 37.2
Solyc05g052970.4 Solanum lycopersicum HOM05D000087 ORTHO05D002585 5.8e-14 81.6 156 35.3
Cpa.g.sc19.270 Carica papaya HOM05D000087 ORTHO05D002585 7.6e-14 81.3 168 38.1
Gorai.011G268400 Gossypium raimondii HOM05D000087 ORTHO05D002585 7.6e-14 81.3 151 34.4
Sopen05g031490 Solanum pennellii HOM05D000087 ORTHO05D002585 7.6e-14 81.3 156 35.3
CsaV3_5G008400 Cucumis sativus L. HOM05D000087 ORTHO05D002585 1.0e-13 80.9 159 36.5
A10p30350 Brassica napus HOM05D000087 ORTHO05D002585 1.3e-13 80.5 126 39.7
COL.COLO4_25493 Corchorus olitorius HOM05D000087 ORTHO05D002585 1.3e-13 80.5 144 36.8
Peaxi162Scf00164g01311 Petunia axillaris HOM05D000087 ORTHO05D002585 1.7e-13 80.1 163 36.8
Ca_08190_v3 Cicer arietinum L. HOM05D000087 ORTHO05D002585 2.9e-13 79.3 138 39.1
Migut.F01275 Erythranthe guttata HOM05D000087 ORTHO05D002585 2.9e-13 79.3 161 32.9
Dinv16253 Davidia involucrata HOM05D000087 ORTHO05D002585 3.8e-13 79.0 137 40.9
Duzib114G0831 Durio zibethinus HOM05D000087 ORTHO05D002585 4.9e-13 78.6 145 33.8
Lsat_1_v5_gn_2_118160 Lactuca sativa HOM05D000087 ORTHO05D002585 6.5e-13 78.2 157 36.3
ClCG07G003600 Citrullus lanatus HOM05D000087 ORTHO05D002585 8.4e-13 77.8 153 34.6
HanXRQChr10g0312731 Helianthus annuus HOM05D000087 ORTHO05D002585 8.4e-13 77.8 161 35.4
Sp6g36860 Schrenkiella parvula HOM05D000087 ORTHO05D002585 8.4e-13 77.8 139 36.7
Aa31LG5G19890 Aethionema arabicum HOM05D000087 ORTHO05D002585 1.1e-12 77.4 172 33.7
ATR0559G309 Amborella trichopoda HOM05D000087 ORTHO05D002585 1.1e-12 77.4 158 32.3
Glyma.11G222800 Glycine max HOM05D000087 ORTHO05D002585 1.1e-12 77.4 132 33.3
Potri.010G199300 Populus trichocarpa HOM05D000087 ORTHO05D002585 1.4e-12 77.0 142 35.9
SalBow6G6355 Salvia bowleyana HOM05D000087 ORTHO05D002585 1.4e-12 77.0 147 32.0
Gohir.A05G347800 Gossypium hirsutum HOM05D000087 ORTHO05D002585 1.9e-12 76.6 136 36.0
Lalb_Chr04g0251021 Lupinus albus HOM05D000087 ORTHO05D002585 1.9e-12 76.6 128 38.3
Psat5g124280 Pisum sativum HOM05D000087 ORTHO05D002585 1.9e-12 76.6 144 35.4
THA.LOC104823130 Tarenaya hassleriana HOM05D000087 ORTHO05D002585 1.9e-12 76.6 139 38.1
BcaC06g32316 Brassica carinata HOM05D000087 ORTHO05D002585 3.2e-12 75.9 134 38.1
BolC9t59837H Brassica oleracea HOM05D000087 ORTHO05D002585 3.2e-12 75.9 134 38.1
CDE02G2533 Ceratophyllum demersum HOM05D000087 ORTHO05D002585 3.2e-12 75.9 171 35.7
Gohir.A10G222500 Gossypium hirsutum HOM05D000087 ORTHO05D002585 4.2e-12 75.5 150 34.7
Oeu011129.1 Olea europaea HOM05D000087 ORTHO05D002585 4.2e-12 75.5 142 34.5
SGA_v2.0_scaffold76G25144 Striga asiatica HOM05D000087 ORTHO05D002585 4.2e-12 75.5 144 35.4
Ah.16g102650 Amaranthus hybridus HOM05D000087 ORTHO05D002585 5.5e-12 75.1 134 35.1
EL10Ac2g04699 Beta vulgaris HOM05D000087 ORTHO05D002585 5.5e-12 75.1 152 34.9
BcaC01g05473 Brassica carinata HOM05D000087 ORTHO05D002585 5.5e-12 75.1 146 32.9
C03p26340 Brassica napus HOM05D000087 ORTHO05D002585 5.5e-12 75.1 146 32.9
Manes.07G119500 Manihot esculenta HOM05D000087 ORTHO05D002585 5.5e-12 75.1 147 36.7
Prupe.2G239900 Prunus persica HOM05D000087 ORTHO05D002585 5.5e-12 75.1 131 36.6
CAN.G1184.8 Capsicum annuum HOM05D000087 ORTHO05D002585 7.1e-12 74.7 139 35.3
Manes.10G026200 Manihot esculenta HOM05D000087 ORTHO05D002585 7.1e-12 74.7 141 40.4
unitig_61.g26161 Utricularia gibba HOM05D000087 ORTHO05D002585 7.1e-12 74.7 148 31.1
Ciclev10030904m.g Citrus clementina HOM05D000087 ORTHO05D002585 1.2e-11 73.9 129 37.2
Oeu059737.1 Olea europaea HOM05D000087 ORTHO05D002585 1.2e-11 73.9 155 34.2
C09p70780 Brassica napus HOM05D000087 ORTHO05D002585 1.6e-11 73.6 134 37.3
ECA238G1379 Erigeron canadensis HOM05D000087 ORTHO05D002585 1.6e-11 73.6 147 34.0
Thhalv10016330m.g Eutrema salsugineum HOM05D000087 ORTHO05D002585 1.6e-11 73.6 158 32.3
PGR142G3596 Punica granatum HOM05D000087 ORTHO05D002585 1.6e-11 73.6 173 34.7
SalBow6G3650 Salvia bowleyana HOM05D000087 ORTHO05D002585 1.6e-11 73.6 157 29.9
CARHR134600 Cardamine hirsuta HOM05D000087 ORTHO05D002585 2.1e-11 73.2 162 32.7
DCAR_027595 Daucus carota HOM05D000087 ORTHO05D002585 2.1e-11 73.2 169 33.7
AL4G37220 Arabidopsis lyrata HOM05D000087 ORTHO05D002585 2.7e-11 72.8 153 32.7
BcaC06g32311 Brassica carinata HOM05D000087 ORTHO05D002585 2.7e-11 72.8 157 33.1
Potri.008G059500 Populus trichocarpa HOM05D000087 ORTHO05D002585 4.6e-11 72.0 150 34.0
Sabra10G0153500 Salix brachista HOM05D000087 ORTHO05D002585 4.6e-11 72.0 148 31.8
arahy.Tifrunner.gnm1.ann1.MIET7U Arachis hypogaea HOM05D000087 ORTHO05D002585 1.0e-10 70.9 136 37.5
BolC4t22396H Brassica oleracea HOM05D000087 ORTHO05D002585 1.0e-10 70.9 137 39.4
AUR62012138 Chenopodium quinoa HOM05D000087 ORTHO05D002585 1.0e-10 70.9 144 33.3
Ah.10g037060 Amaranthus hybridus HOM05D000087 ORTHO05D002585 1.3e-10 70.5 146 34.9
Sabra08G0043700 Salix brachista HOM05D000087 ORTHO05D002585 1.3e-10 70.5 150 33.3
Lj6g0009259 Lotus japonicus HOM05D000087 ORTHO05D002585 1.8e-10 70.1 145 33.1
Nitab4.5_0008967g0010 Nicotiana tabacum HOM05D000087 ORTHO05D002585 1.8e-10 70.1 128 35.2
Thhalv10012860m.g Eutrema salsugineum HOM05D000087 ORTHO05D002585 2.3e-10 69.7 131 35.9
Carub.0004s2181 Capsella rubella HOM05D000087 ORTHO05D002585 3.9e-10 68.9 160 31.9
Cc02_g07410 Coffea canephora HOM05D000087 ORTHO05D002585 3.9e-10 68.9 149 33.6
Carub.0006s0491 Capsella rubella HOM05D000087 ORTHO05D002585 5.1e-10 68.6 150 35.3
Lalb_Chr18g0053051 Lupinus albus HOM05D000087 ORTHO05D002585 6.7e-10 68.2 122 38.5
Migut.F00747 Erythranthe guttata HOM05D000087 ORTHO05D002585 8.7e-10 67.8 149 35.6
Eucgr.G02963 Eucalyptus grandis HOM05D000087 ORTHO05D002585 1.1e-09 67.4 163 33.7
Nitab4.5_0004074g0020 Nicotiana tabacum HOM05D000087 ORTHO05D002585 1.9e-09 66.6 127 34.6
A03p22250 Brassica napus HOM05D000087 ORTHO05D002585 2.5e-09 66.2 151 34.4
arahy.Tifrunner.gnm1.ann1.E72KC6 Arachis hypogaea HOM05D000087 ORTHO05D002585 3.3e-09 65.9 115 38.3
arahy.Tifrunner.gnm1.ann1.YE7TPW Arachis hypogaea HOM05D000087 ORTHO05D002585 3.3e-09 65.9 115 38.3
Medtr3g068990 Medicago truncatula HOM05D000087 ORTHO05D002585 3.3e-09 65.9 137 31.4
Oeu017563.1 Olea europaea HOM05D000087 ORTHO05D002585 3.3e-09 65.9 161 32.3
CANSAT80G1084 Cannabis sativa HOM05D000087 ORTHO05D002585 7.4e-09 64.7 141 35.5
VMungo0647G1621 Vigna mungo HOM05D000087 ORTHO05D002585 7.4e-09 64.7 125 34.4
MSTRG.27365 Avicennia marina HOM05D000087 ORTHO05D002585 9.7e-09 64.3 128 36.7
A05p06670 Brassica napus HOM05D001467 ORTHO05D001447 9.7e-09 64.3 135 36.3
BolC3t15019H Brassica oleracea HOM05D000087 ORTHO05D002585 1.3e-08 63.9 149 30.9
Rhsim03G0133700 Rhododendron simsii HOM05D000087 ORTHO05D339445 1.6e-08 63.5 80 45.0
arahy.Tifrunner.gnm1.ann1.7SU9VE Arachis hypogaea HOM05D000087 ORTHO05D002585 2.8e-08 62.8 137 35.8
BraA05t19633Z Brassica rapa HOM05D000087 ORTHO05D002585 2.8e-08 62.8 139 33.8
DCAR_011732 Daucus carota HOM05D000087 ORTHO05D002585 2.8e-08 62.8 124 34.7
AT2G39750 Arabidopsis thaliana HOM05D000087 ORTHO05D002585 3.7e-08 62.4 175 28.6
Nitab4.5_0000647g0210 Nicotiana tabacum HOM05D000087 ORTHO05D002585 3.7e-08 62.4 130 33.1
BcaB02g09092 Brassica carinata HOM05D000087 ORTHO05D002585 6.3e-08 61.6 135 31.9
HPP92_014292 Vanilla planifolia HOM05D000087 ORTHO05D002585 6.3e-08 61.6 160 31.9
MSTRG.265 Avicennia marina HOM05D000087 ORTHO05D002585 8.2e-08 61.2 153 32.7
HanXRQChr08g0221171 Helianthus annuus HOM05D000087 ORTHO05D002585 8.2e-08 61.2 146 30.1
Lsat_1_v5_gn_8_14860 Lactuca sativa HOM05D000087 ORTHO05D002585 8.2e-08 61.2 152 30.9
C04p07790 Brassica napus HOM05D000087 ORTHO05D002585 1.1e-07 60.8 134 35.8
BolC6t40161H Brassica oleracea HOM05D000087 ORTHO05D002585 1.1e-07 60.8 133 33.8
BraA03t11456Z Brassica rapa HOM05D000087 ORTHO05D002585 1.4e-07 60.5 152 32.9
Hund13796 Selenicereus undatus HOM05D000087 ORTHO05D002585 1.8e-07 60.1 142 31.0
RcHm_v2.0_Chr1g0368331 Rosa chinensis HOM05D000087 ORTHO05D002585 2.4e-07 59.7 158 30.4
FAN01G2898 Fragaria x ananassa HOM05D000087 ORTHO05D002585 3.1e-07 59.3 147 29.9
Aa31LG11G7060 Aethionema arabicum HOM05D000087 ORTHO05D002585 4.1e-07 58.9 136 30.1
Prupe.1G488500 Prunus persica HOM05D000087 ORTHO05D002585 4.1e-07 58.9 146 33.6
TPR.G25825 Trifolium pratense HOM05D000087 ORTHO05D002585 5.3e-07 58.5 132 34.8
MD15G1132900 Malus domestica HOM05D000087 ORTHO05D002585 6.9e-07 58.2 140 34.3
FAN06G3915 Fragaria x ananassa HOM05D000087 ORTHO05D002585 9.0e-07 57.8 147 29.9
HanXRQChr12g0369541 Helianthus annuus HOM05D000087 ORTHO05D002585 9.0e-07 57.8 126 31.0
A07p42760 Brassica napus HOM05D000087 ORTHO05D002585 1.2e-06 57.4 131 36.6
C06p51430 Brassica napus HOM05D000087 ORTHO05D002585 1.5e-06 57.0 146 33.6
Medtr5g080720 Medicago truncatula HOM05D000087 ORTHO05D002585 1.5e-06 57.0 116 32.8
Sed0000585 Sechium edule HOM05D000087 ORTHO05D002585 2.6e-06 56.2 123 34.1
FAN10G1173 Fragaria x ananassa HOM05D000087 ORTHO05D002585 3.4e-06 55.8 159 30.2
Sp5g32430 Schrenkiella parvula HOM05D000087 ORTHO05D002585 3.4e-06 55.8 153 32.7
BraA07t31802Z Brassica rapa HOM05D000087 ORTHO05D002585 4.5e-06 55.5 131 34.4
Dinv26048 Davidia involucrata HOM05D000087 ORTHO05D002585 4.5e-06 55.5 127 35.4
FvH4_2g28020 Fragaria vesca HOM05D000087 ORTHO05D002585 4.5e-06 55.5 127 33.9
THA.LOC104813685 Tarenaya hassleriana HOM05D000087 ORTHO05D002585 4.5e-06 55.5 131 31.3
Actinidia21270 Actinidia chinensis HOM05D000087 ORTHO05D002585 5.9e-06 55.1 136 31.6
BcaC02g12107 Brassica carinata HOM05D000087 ORTHO05D002585 5.9e-06 55.1 130 35.4
RcHm_v2.0_Chr6g0296881 Rosa chinensis HOM05D000087 ORTHO05D002585 5.9e-06 55.1 143 32.9
Dinv27261 Davidia involucrata HOM05D000087 ORTHO05D002585 7.7e-06 54.7 142 26.8
Hma1.2p1_1732F.1_g299780 Hydrangea macrophylla HOM05D000087 ORTHO05D002585 7.7e-06 54.7 141 33.3
Phvul.008G231000 Phaseolus vulgaris HOM05D000087 ORTHO05D002585 7.7e-06 54.7 117 31.6
HPP92_019845 Vanilla planifolia HOM05D000087 ORTHO05D002585 1.0e-05 54.3 148 30.4


User provided reference genes

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