Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 7.7e-223 776.9 424 100.0
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 4.1e-147 525.4 436 65.6
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 2.1e-143 513.1 406 68.7
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 3.6e-135 485.7 348 75.6
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 7.9e-135 484.6 368 68.8
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 1.0e-134 484.2 374 67.6
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 3.9e-134 482.3 422 61.6
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 1.5e-133 480.3 421 61.8
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 2.0e-133 479.9 406 64.0
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 2.2e-132 476.5 358 70.4
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 2.8e-132 476.1 409 62.6
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 4.8e-132 475.3 364 67.3
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 1.8e-131 473.4 399 64.7
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 2.4e-131 473.0 345 72.2
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 3.1e-131 472.6 379 71.2
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 4.1e-131 472.2 402 62.7
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 4.1e-131 472.2 402 62.9
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 1.2e-130 470.7 370 65.4
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 1.5e-130 470.3 391 69.8
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 1.5e-130 470.3 369 67.5
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 1.5e-130 470.3 385 65.5
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 2.0e-130 469.9 350 68.3
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 3.4e-130 469.2 374 65.8
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 4.5e-130 468.8 349 69.3
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 5.9e-130 468.4 434 59.9
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 7.7e-130 468.0 320 73.4
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 1.0e-129 467.6 367 65.4
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 1.3e-129 467.2 405 62.5
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 1.7e-129 466.8 405 62.2
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 8.5e-129 464.5 370 65.9
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.1e-128 464.2 434 59.2
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 1.4e-128 463.8 380 64.5
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 1.9e-128 463.4 401 67.6
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 2.5e-128 463.0 374 65.8
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 3.2e-128 462.6 401 67.8
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 4.2e-128 462.2 387 62.8
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 4.2e-128 462.2 390 64.1
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 7.2e-128 461.5 348 72.7
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 1.2e-127 460.7 363 67.5
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 1.6e-127 460.3 373 65.7
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 1.6e-127 460.3 385 64.2
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 1.6e-127 460.3 365 64.9
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 2.7e-127 459.5 410 62.7
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 3.6e-127 459.1 402 61.9
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 8.0e-127 458.0 377 62.6
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 8.0e-127 458.0 371 65.0
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 1.0e-126 457.6 350 67.4
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 1.0e-126 457.6 369 65.3
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 1.8e-126 456.8 357 66.7
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 2.3e-126 456.4 421 57.2
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 3.9e-126 455.7 366 70.5
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.1e-125 454.1 432 56.7
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 1.1e-125 454.1 366 64.2
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 1.5e-125 453.8 381 61.2
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 7.4e-125 451.4 374 61.8
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 7.4e-125 451.4 302 73.5
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 7.4e-125 451.4 372 64.0
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 7.4e-125 451.4 322 70.2
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 9.7e-125 451.1 424 56.4
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 8.2e-124 448.0 350 66.9
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 1.4e-123 447.2 411 57.9
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 5.3e-123 445.3 438 55.0
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 9.1e-123 444.5 361 62.3
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 2.0e-122 443.4 411 58.4
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 2.6e-122 443.0 421 55.8
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 3.5e-122 442.6 295 73.6
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 3.5e-122 442.6 382 60.2
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 1.7e-121 440.3 411 57.9
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 2.2e-121 439.9 417 55.9
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 2.9e-121 439.5 376 63.3
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 8.5e-121 438.0 401 60.1
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 1.5e-120 437.2 376 59.8
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 2.5e-120 436.4 418 56.0
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 3.2e-120 436.0 280 78.2
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 5.5e-120 435.3 513 50.7
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 1.6e-119 433.7 295 72.2
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 8.0e-119 431.4 313 70.9
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 4.0e-118 429.1 265 81.9
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 8.8e-118 427.9 343 62.4
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 8.8e-118 427.9 387 62.3
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 3.3e-117 426.0 279 74.9
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 3.3e-117 426.0 316 68.7
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 6.3e-116 421.8 379 60.4
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 6.3e-108 395.2 516 46.3
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.4e-107 394.0 334 62.9
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 3.8e-105 386.0 292 74.7
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 8.0e-103 378.3 379 54.4
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 2.6e-101 373.2 261 70.1
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 3.4e-101 372.9 368 55.4
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 7.5e-101 371.7 349 60.5
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 5.4e-99 365.5 532 44.2
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 5.9e-98 362.1 336 58.9
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 1.0e-97 361.3 403 52.4
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 3.8e-97 359.4 313 59.4
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 9.8e-93 344.7 249 68.7
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 6.0e-90 335.5 405 48.4
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 3.3e-88 329.7 237 71.7
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 4.7e-87 325.9 258 67.1
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 1.2e-85 321.2 284 62.3
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 4.4e-85 319.3 279 62.7
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 5.8e-85 318.9 290 60.7
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 7.0e-83 312.0 361 48.8
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 7.0e-83 312.0 298 58.1
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 1.2e-79 301.2 203 82.8
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 6.6e-73 278.9 381 43.6
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 8.6e-73 278.5 314 43.6
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 4.9e-68 262.7 295 52.9
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 1.1e-62 245.0 161 70.8
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 3.5e-58 229.9 160 68.8
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 6.2e-55 219.2 221 59.3
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 3.8e-52 209.9 150 68.0
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 4.9e-52 209.5 274 49.6
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 2.4e-38 164.1 201 48.3
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 1.5e-29 134.8 110 76.4
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 2.1e-26 124.4 106 61.3
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 1.1e-24 118.6 106 58.5
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 1.1e-24 118.6 136 50.7
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 6.5e-20 102.8 96 55.2
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 1.9e-19 101.3 61 78.7
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 2.2e-15 87.8 156 46.8
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 2.6e-13 80.9 69 59.4
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 9.4e-11 72.4 35 94.3
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 4.1e-06 57.0 77 45.5


User provided reference genes

Program Settings