Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 9.4e-124 446.8 217 100.0
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 4.7e-91 338.2 191 82.7
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 1.3e-88 330.1 189 79.4
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 3.9e-85 318.5 188 79.3
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 8.6e-85 317.4 188 78.7
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 1.2e-83 313.5 191 76.4
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 1.2e-83 313.5 196 75.0
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 2.8e-83 312.4 196 74.5
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 2.8e-83 312.4 190 77.9
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 6.2e-83 311.2 189 77.2
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.0e-82 310.5 190 74.7
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 1.0e-82 310.5 188 77.1
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 2.3e-82 309.3 190 77.4
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 4.0e-82 308.5 189 77.2
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 5.2e-82 308.1 190 75.3
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 6.8e-82 307.8 202 70.8
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 1.5e-81 306.6 188 74.5
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 2.0e-81 306.2 193 73.6
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 2.0e-81 306.2 185 76.8
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 1.3e-80 303.5 194 73.2
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 3.7e-80 302.0 197 72.1
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 4.9e-80 301.6 184 76.6
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 4.9e-80 301.6 188 73.9
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 1.1e-79 300.4 189 74.1
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 1.9e-79 299.7 189 74.6
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 2.4e-79 299.3 185 75.1
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 9.2e-79 297.4 190 73.7
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 9.2e-79 297.4 185 75.7
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 2.7e-78 295.8 190 74.7
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 3.5e-78 295.4 188 72.3
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 3.5e-78 295.4 188 72.3
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 3.5e-78 295.4 185 75.1
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 3.5e-78 295.4 190 74.7
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 4.6e-78 295.0 199 66.3
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 4.6e-78 295.0 192 67.7
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.0e-77 293.9 185 75.1
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 1.0e-77 293.9 187 72.7
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.3e-77 293.5 188 72.3
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 2.3e-77 292.7 188 71.3
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 3.9e-77 292.0 175 81.1
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 5.0e-77 291.6 177 79.1
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 1.1e-76 290.4 204 67.2
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 1.1e-76 290.4 192 69.3
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 5.6e-76 288.1 196 73.5
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 9.5e-76 287.3 185 74.1
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 3.6e-75 285.4 194 71.6
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 3.6e-75 285.4 168 78.0
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 4.7e-75 285.0 194 69.6
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 1.1e-74 283.9 186 72.6
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 1.4e-74 283.5 168 77.4
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 3.1e-74 282.3 189 69.8
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 3.1e-74 282.3 195 69.2
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.5e-73 280.0 203 66.5
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 2.0e-73 279.6 189 69.3
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 2.0e-73 279.6 197 68.0
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 4.4e-73 278.5 187 72.2
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 5.8e-73 278.1 193 66.8
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 9.8e-73 277.3 190 68.4
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 6.4e-72 274.6 185 68.1
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.1e-71 273.9 188 68.1
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.4e-71 273.5 198 64.6
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 4.1e-71 271.9 194 66.0
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 4.1e-71 271.9 194 67.5
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 4.1e-71 271.9 191 67.0
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 5.4e-71 271.6 189 67.7
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 1.6e-70 270.0 190 65.8
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 2.7e-70 269.2 198 66.2
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 3.5e-70 268.9 189 68.3
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 6.0e-70 268.1 190 67.4
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 6.0e-70 268.1 186 66.7
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 6.0e-70 268.1 189 66.1
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 6.0e-70 268.1 195 68.7
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 1.0e-69 267.3 187 67.9
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 3.0e-69 265.8 175 72.6
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 5.1e-69 265.0 192 66.1
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 5.1e-69 265.0 190 66.3
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 5.1e-69 265.0 190 65.8
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 3.3e-68 262.3 190 66.3
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 3.3e-68 262.3 190 66.3
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 3.3e-68 262.3 190 66.3
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 4.3e-68 261.9 186 66.7
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 2.3e-66 256.1 204 61.8
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 8.4e-64 247.7 179 63.1
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 2.4e-63 246.1 165 71.5
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 1.2e-62 243.8 190 59.5
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 2.7e-62 242.7 185 63.8
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 3.0e-61 239.2 177 65.5
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 6.6e-61 238.0 149 75.2
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 8.6e-61 237.7 184 62.0
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 2.5e-60 236.1 147 73.5
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 8.1e-59 231.1 189 59.3
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 6.6e-53 211.5 189 56.6
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 5.6e-52 208.4 186 55.4
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 5.8e-49 198.4 187 53.5
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 8.4e-48 194.5 192 51.0
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 4.5e-41 172.2 112 69.6
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 7.4e-36 154.8 106 65.1
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 4.5e-33 145.6 89 76.4
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 4.2e-31 139.0 81 80.2
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.7e-30 136.3 89 76.4
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 1.9e-28 130.2 80 76.2
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 8.2e-27 124.8 81 75.3
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 3.0e-21 106.3 89 55.1
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 3.9e-21 105.9 90 60.0
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 1.9e-20 103.6 159 41.5
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 5.7e-20 102.1 74 62.2
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 1.1e-18 97.8 73 63.0
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 4.2e-15 85.9 49 77.6
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.3e-13 80.1 179 31.3
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 2.6e-12 76.6 175 34.3
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 7.4e-12 75.1 188 29.8
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 2.2e-11 73.6 178 31.5
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 3.7e-11 72.8 179 26.8
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 4.8e-11 72.4 175 32.0
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 6.3e-11 72.0 168 32.7
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.1e-10 71.2 175 32.6
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.1e-10 71.2 170 31.8
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.4e-10 70.9 165 30.9
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 2.4e-10 70.1 179 33.5
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 3.1e-10 69.7 189 24.9
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 4.1e-10 69.3 172 30.8
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 5.3e-10 68.9 182 30.2
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 6.9e-10 68.6 158 29.7
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 6.9e-10 68.6 182 31.3
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 6.9e-10 68.6 178 28.1
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 6.9e-10 68.6 171 32.2
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 6.9e-10 68.6 181 30.4
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 6.9e-10 68.6 170 31.8
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 9.1e-10 68.2 148 31.8
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 9.1e-10 68.2 167 32.3
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 9.1e-10 68.2 172 29.1
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 9.1e-10 68.2 172 25.6
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.2e-09 67.8 165 29.7
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 1.2e-09 67.8 171 29.2
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 2.0e-09 67.0 175 32.0
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.0e-09 67.0 172 29.7
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 3.4e-09 66.2 183 26.8
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 4.5e-09 65.9 178 27.5
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 7.7e-09 65.1 175 27.4
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 2.2e-08 63.5 178 29.8
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 2.9e-08 63.2 174 29.3
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.9e-07 60.5 146 28.8
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 9.4e-07 58.2 150 29.3
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 9.4e-07 58.2 169 27.8
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 7.9e-06 55.1 71 38.0


User provided reference genes

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