Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24931 Nelumbo nucifera HOM05D007753 ORTHO05D009385 5.8e-106 387.5 186 100.0
Nn8g39391 Nelumbo nucifera HOM05D007753 ORTHO05D009385 8.0e-39 164.5 122 73.8
Nn2g11967 Nelumbo nucifera HOM05D007753 ORTHO05D009385 1.2e-34 150.6 123 68.3
TAR626G0264 Trochodendron aralioides HOM05D007753 ORTHO05D009385 6.3e-28 128.3 147 52.4
TAR626G0406 Trochodendron aralioides HOM05D007753 ORTHO05D009385 6.3e-28 128.3 147 52.4
CiPaw.01G244900 Carya illinoinensis HOM05D007753 ORTHO05D009385 2.9e-25 119.4 151 47.7
Rhsim08G0215900 Rhododendron simsii HOM05D007753 ORTHO05D009385 2.5e-24 116.3 137 50.4
Lj5C69T4 Lonicera japonica HOM05D007753 ORTHO05D009385 3.3e-24 115.9 133 49.6
Dinv30574 Davidia involucrata HOM05D007753 ORTHO05D009385 2.3e-22 109.8 122 50.8
COL.COLO4_12908 Corchorus olitorius HOM05D007753 ORTHO05D009385 1.2e-21 107.5 133 46.6
Ciclev10027449m.g Citrus clementina HOM05D007753 ORTHO05D009385 4.4e-21 105.5 135 46.7
vmacro18967 Vaccinium macrocarpon HOM05D007753 ORTHO05D009385 9.8e-21 104.4 133 45.9
FAN05G5641 Fragaria x ananassa HOM05D007753 ORTHO05D009385 1.7e-20 103.6 136 42.6
FvH4_6g30250 Fragaria vesca HOM05D007753 ORTHO05D009385 2.2e-20 103.2 136 42.6
FAN14G1500 Fragaria x ananassa HOM05D007753 ORTHO05D009385 2.2e-20 103.2 136 42.6
Aqoxy7G02101 Aquilegia oxysepala HOM05D007753 ORTHO05D009385 2.8e-20 102.8 120 48.3
CsaV3_4G001420 Cucumis sativus L. HOM05D007753 ORTHO05D009385 2.8e-20 102.8 150 41.3
Hma1.2p1_0515F.1_g170220 Hydrangea macrophylla HOM05D007753 ORTHO05D009385 2.8e-20 102.8 115 52.2
Atru.chr1.3069 Acer truncatum HOM05D007753 ORTHO05D009385 4.9e-20 102.1 152 44.1
FAN02G0819 Fragaria x ananassa HOM05D007753 ORTHO05D009385 6.3e-20 101.7 136 42.6
Thecc.06G071000 Theobroma cacao HOM05D007753 ORTHO05D009385 6.3e-20 101.7 133 45.9
RcHm_v2.0_Chr2g0136491 Rosa chinensis HOM05D007753 ORTHO05D009385 8.3e-20 101.3 140 42.9
Cc04_g04070 Coffea canephora HOM05D007753 ORTHO05D009385 1.1e-19 100.9 133 46.6
MELO3C017898.2 Cucumis melo HOM05D007753 ORTHO05D009385 1.1e-19 100.9 150 42.0
Nn1g04494 Nelumbo nucifera HOM05D007753 ORTHO05D009385 1.1e-19 100.9 86 62.8
QL05p027928 Quercus lobata HOM05D007753 ORTHO05D009385 1.1e-19 100.9 136 47.8
Sed0004194 Sechium edule HOM05D007753 ORTHO05D009385 1.1e-19 100.9 135 43.0
Sed0009628 Sechium edule HOM05D007753 ORTHO05D009385 1.1e-19 100.9 112 47.3
MD17G1206200 Malus domestica HOM05D007753 ORTHO05D009385 1.8e-19 100.1 147 41.5
ClCG00G004440 Citrullus lanatus HOM05D007753 ORTHO05D009385 4.1e-19 99.0 150 41.3
ClCG07G012780 Citrullus lanatus HOM05D007753 ORTHO05D009385 4.1e-19 99.0 150 41.3
Manes.11G053400 Manihot esculenta HOM05D007753 ORTHO05D009385 5.4e-19 98.6 133 42.9
Eucgr.F02545 Eucalyptus grandis HOM05D007753 ORTHO05D009385 9.2e-19 97.8 133 42.9
Prupe.3G081200 Prunus persica HOM05D007753 ORTHO05D009385 9.2e-19 97.8 135 41.5
QL05p063911 Quercus lobata HOM05D007753 ORTHO05D009385 9.2e-19 97.8 115 52.2
Sabra03G0036100 Salix brachista HOM05D007753 ORTHO05D009385 1.2e-18 97.4 133 43.6
Potri.003G062000 Populus trichocarpa HOM05D007753 ORTHO05D009385 2.7e-18 96.3 175 40.6
Haze_16518 Corylus avellana HOM05D007753 ORTHO05D009385 3.5e-18 95.9 152 42.1
MSTRG.11118 Avicennia marina HOM05D007753 ORTHO05D009385 7.8e-18 94.7 133 42.1
Migut.I00798 Erythranthe guttata HOM05D007753 ORTHO05D009385 7.8e-18 94.7 132 44.7
TWI75G0540 Tripterygium wilfordii HOM05D007753 ORTHO05D009385 7.8e-18 94.7 122 47.5
Gorai.009G130300 Gossypium raimondii HOM05D007753 ORTHO05D009385 1.0e-17 94.4 133 42.9
Sopen03g035370 Solanum pennellii HOM05D007753 ORTHO05D009385 1.3e-17 94.0 135 43.0
Cfa002006 Carpinus fangiana HOM05D007753 ORTHO05D009385 1.7e-17 93.6 153 41.8
DCAR_025487 Daucus carota HOM05D007753 ORTHO05D009385 1.7e-17 93.6 133 43.6
Gohir.A05G125300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 1.7e-17 93.6 133 42.9
Gohir.D05G126300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 1.7e-17 93.6 133 42.9
Medtr4g011090 Medicago truncatula HOM05D007753 ORTHO05D009385 2.3e-17 93.2 140 41.4
Solyc03g116480.1 Solanum lycopersicum HOM05D007753 ORTHO05D009385 2.9e-17 92.8 135 43.0
HanXRQChr09g0274921 Helianthus annuus HOM05D007753 ORTHO05D009385 5.0e-17 92.0 133 45.9
Lj3g0017927 Lotus japonicus HOM05D007753 ORTHO05D009385 5.0e-17 92.0 134 43.3
Phvul.010G154000 Phaseolus vulgaris HOM05D007753 ORTHO05D009385 8.6e-17 91.3 139 45.3
TPR.G38673 Trifolium pratense HOM05D007753 ORTHO05D009385 8.6e-17 91.3 140 40.7
Cpa.g.sc10.226 Carica papaya HOM05D007753 ORTHO05D009385 1.1e-16 90.9 136 41.2
Glyma.07G032000 Glycine max HOM05D007753 ORTHO05D009385 1.5e-16 90.5 140 44.3
HanXRQChr16g0500541 Helianthus annuus HOM05D007753 ORTHO05D009385 1.5e-16 90.5 135 43.0
CANSAT56G2472 Cannabis sativa HOM05D007753 ORTHO05D009385 2.5e-16 89.7 143 39.2
PGSC0003DMG400000606 Solanum tuberosum HOM05D007753 ORTHO05D009385 2.5e-16 89.7 135 41.5
Peaxi162Scf00274g00826 Petunia axillaris HOM05D007753 ORTHO05D009385 7.3e-16 88.2 114 43.9
Nitab4.5_0002257g0030 Nicotiana tabacum HOM05D007753 ORTHO05D009385 9.5e-16 87.8 135 40.0
VMungo0331G0527 Vigna mungo HOM05D007753 ORTHO05D009385 9.5e-16 87.8 114 46.5
Ca_20429_v3 Cicer arietinum L. HOM05D007753 ORTHO05D009385 1.2e-15 87.4 139 39.6
Glyma.08G210700 Glycine max HOM05D007753 ORTHO05D009385 1.6e-15 87.0 143 42.7
Nitab4.5_0006574g0050 Nicotiana tabacum HOM05D007753 ORTHO05D009385 1.6e-15 87.0 136 39.7
PGR102G0169 Punica granatum HOM05D007753 ORTHO05D009385 3.6e-15 85.9 133 39.8
Psat7g000960 Pisum sativum HOM05D007753 ORTHO05D009385 8.0e-15 84.7 143 39.2
arahy.Tifrunner.gnm1.ann1.PVCU19 Arachis hypogaea HOM05D007753 ORTHO05D009385 1.0e-14 84.3 141 40.4
arahy.Tifrunner.gnm1.ann1.M43JJC Arachis hypogaea HOM05D007753 ORTHO05D009385 1.8e-14 83.6 141 41.1
SGA_v2.0_scaffold5G02663 Striga asiatica HOM05D007753 ORTHO05D009385 1.8e-14 83.6 109 43.1
ECA232G3915 Erigeron canadensis HOM05D007753 ORTHO05D009385 2.3e-14 83.2 137 40.9
CAN.G407.105 Capsicum annuum HOM05D007753 ORTHO05D009385 3.1e-14 82.8 135 39.3
Lsat_1_v5_gn_4_105861 Lactuca sativa HOM05D007753 ORTHO05D009385 3.1e-14 82.8 130 43.1
Lalb_Chr04g0262461 Lupinus albus HOM05D007753 ORTHO05D009385 5.8e-13 78.6 119 41.2
SEGI_19660 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 4.1e-11 72.4 122 36.9
SEGI_20973 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 4.1e-11 72.4 122 36.9
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 3.5e-10 69.3 107 40.2
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 3.0e-09 66.2 126 33.3
CSS0017457 Camellia sinensis var. sinensis HOM05D007753 ORTHO05D009385 3.9e-09 65.9 115 43.5
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 1.5e-08 63.9 128 32.0
Actinidia01765 Actinidia chinensis HOM05D007753 ORTHO05D009385 2.5e-08 63.2 80 48.8
Oeu015237.1 Olea europaea HOM05D007753 ORTHO05D009385 7.3e-08 61.6 90 43.3
Rhsim03G0103900 Rhododendron simsii HOM05D007753 ORTHO05D009385 7.3e-08 61.6 65 52.3


User provided reference genes

Program Settings