Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24915 Nelumbo nucifera HOM05D007059 ORTHO05D009155 4.2e-164 581.3 283 100.0
TAR629G1440 Trochodendron aralioides HOM05D007059 ORTHO05D009155 2.3e-93 346.3 227 77.5
Prupe.1G344600 Prunus persica HOM05D007059 ORTHO05D009155 1.2e-83 313.9 229 72.5
FAN12G0665 Fragaria x ananassa HOM05D007059 ORTHO05D009155 1.6e-83 313.5 231 71.0
PSO063G1277 Papaver somniferum HOM05D007059 ORTHO05D009155 1.6e-83 313.5 228 70.6
FAN07G2854 Fragaria x ananassa HOM05D007059 ORTHO05D009155 6.1e-83 311.6 231 71.0
PSO782G1004 Papaver somniferum HOM05D007059 ORTHO05D009155 8.0e-83 311.2 228 70.2
Thecc.02G295400 Theobroma cacao HOM05D007059 ORTHO05D009155 8.0e-83 311.2 231 71.4
CiPaw.05G167400 Carya illinoinensis HOM05D007059 ORTHO05D009155 1.4e-82 310.5 228 71.1
FvH4_4g36660 Fragaria vesca HOM05D007059 ORTHO05D009155 4.0e-82 308.9 229 70.7
MBI06_g22349_MAGBIO Magnolia biondii HOM05D007059 ORTHO05D009155 1.2e-81 307.4 235 68.1
Atru.chr11.1222 Acer truncatum HOM05D007059 ORTHO05D009155 2.0e-81 306.6 228 69.3
GSVIVG01010187001 Vitis vinifera HOM05D007059 ORTHO05D009155 3.7e-80 302.4 227 68.3
MD16G1006000 Malus domestica HOM05D007059 ORTHO05D009155 6.4e-80 301.6 229 70.3
RcHm_v2.0_Chr4g0446371 Rosa chinensis HOM05D007059 ORTHO05D009155 6.4e-80 301.6 229 70.7
Eucgr.G02016 Eucalyptus grandis HOM05D007059 ORTHO05D009155 1.8e-79 300.1 231 67.1
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 2.4e-79 299.7 230 68.3
Rhsim04G0168700 Rhododendron simsii HOM05D007059 ORTHO05D009155 3.2e-79 299.3 228 69.3
vmacro08590 Vaccinium macrocarpon HOM05D007059 ORTHO05D009155 1.2e-78 297.4 226 68.1
CSS0038027 Camellia sinensis var. sinensis HOM05D007059 ORTHO05D009155 2.7e-78 296.2 226 67.3
COL.COLO4_16620 Corchorus olitorius HOM05D007059 ORTHO05D009155 1.7e-77 293.5 229 69.4
Manes.16G044801 Manihot esculenta HOM05D007059 ORTHO05D009155 1.7e-77 293.5 231 66.7
Potri.010G169700 Populus trichocarpa HOM05D007059 ORTHO05D009155 3.0e-77 292.7 234 68.4
Ciclev10033522m.g Citrus clementina HOM05D007059 ORTHO05D009155 5.0e-77 292.0 230 68.7
Sabra10G0129500 Salix brachista HOM05D007059 ORTHO05D009155 1.9e-76 290.0 234 67.9
Lj3A851T65 Lonicera japonica HOM05D007059 ORTHO05D009155 6.2e-75 285.0 247 64.8
Lalb_Chr01g0001591 Lupinus albus HOM05D007059 ORTHO05D009155 1.4e-74 283.9 225 64.0
Lj3g0001367 Lotus japonicus HOM05D007059 ORTHO05D009155 4.4e-73 278.9 224 63.8
Ca_03042_v3 Cicer arietinum L. HOM05D007059 ORTHO05D009155 5.8e-73 278.5 226 63.3
Gohir.D01G138500 Gossypium hirsutum HOM05D007059 ORTHO05D009155 9.8e-73 277.7 232 65.9
Aqoxy3G04246 Aquilegia oxysepala HOM05D007059 ORTHO05D009155 1.3e-72 277.3 230 66.1
TPR.G21564 Trifolium pratense HOM05D007059 ORTHO05D009155 1.3e-72 277.3 227 63.9
MELO3C020030.2 Cucumis melo HOM05D007059 ORTHO05D009155 2.2e-72 276.6 228 63.2
Psat7g174240 Pisum sativum HOM05D007059 ORTHO05D009155 2.2e-72 276.6 224 62.9
Glyma.11G104100 Glycine max HOM05D007059 ORTHO05D009155 3.7e-72 275.8 226 63.7
Gorai.002G167400 Gossypium raimondii HOM05D007059 ORTHO05D009155 3.7e-72 275.8 232 65.9
Actinidia38411 Actinidia chinensis HOM05D007059 ORTHO05D009155 4.9e-72 275.4 229 63.3
Gohir.A01G145900 Gossypium hirsutum HOM05D007059 ORTHO05D009155 8.3e-72 274.6 232 66.4
Sc10g0008670 Simmondsia chinensis HOM05D007059 ORTHO05D009155 1.1e-71 274.2 229 63.3
Medtr4g074210 Medicago truncatula HOM05D007059 ORTHO05D009155 2.4e-71 273.1 230 61.3
Glyma.12G029100 Glycine max HOM05D007059 ORTHO05D009155 3.2e-71 272.7 226 63.7
Phvul.011G032300 Phaseolus vulgaris HOM05D007059 ORTHO05D009155 4.1e-71 272.3 225 63.1
Peaxi162Scf01172g00004 Petunia axillaris HOM05D007059 ORTHO05D009155 5.4e-71 271.9 167 77.8
VMungo1127G1389 Vigna mungo HOM05D007059 ORTHO05D009155 1.2e-70 270.8 225 63.6
ClCG11G001160 Citrullus lanatus HOM05D007059 ORTHO05D009155 2.3e-69 266.5 237 59.9
Sed0015909 Sechium edule HOM05D007059 ORTHO05D009155 1.5e-68 263.8 231 61.0
CAN.G624.23 Capsicum annuum HOM05D007059 ORTHO05D009155 1.9e-68 263.5 162 80.9
HanXRQChr01g0028541 Helianthus annuus HOM05D007059 ORTHO05D009155 1.9e-68 263.5 243 60.1
BcaC09g48947 Brassica carinata HOM05D007059 ORTHO05D009155 2.5e-68 263.1 229 62.9
Nitab4.5_0002113g0150 Nicotiana tabacum HOM05D007059 ORTHO05D009155 2.5e-68 263.1 162 79.6
Nitab4.5_0007261g0020 Nicotiana tabacum HOM05D007059 ORTHO05D009155 2.5e-68 263.1 162 79.6
Sopen04g004490 Solanum pennellii HOM05D007059 ORTHO05D009155 3.3e-68 262.7 162 81.5
Solyc04g009370.4 Solanum lycopersicum HOM05D007059 ORTHO05D009155 1.6e-67 260.4 162 80.9
PGSC0003DMG400032539 Solanum tuberosum HOM05D007059 ORTHO05D009155 1.6e-67 260.4 162 80.2
Cc11_g00200 Coffea canephora HOM05D007059 ORTHO05D009155 3.6e-67 259.2 228 63.2
Sp3g17910 Schrenkiella parvula HOM05D007059 ORTHO05D009155 3.6e-67 259.2 227 61.7
C01p44250 Brassica napus HOM05D007059 ORTHO05D009155 4.7e-67 258.8 159 79.9
BolC1t04385H Brassica oleracea HOM05D007059 ORTHO05D009155 4.7e-67 258.8 159 79.9
Migut.E00704 Erythranthe guttata HOM05D007059 ORTHO05D009155 6.2e-67 258.5 225 63.1
AUR62017646 Chenopodium quinoa HOM05D007059 ORTHO05D009155 8.1e-67 258.1 225 60.0
Carub.0003s1980 Capsella rubella HOM05D007059 ORTHO05D009155 1.1e-66 257.7 159 80.5
AL3G33460 Arabidopsis lyrata HOM05D007059 ORTHO05D009155 1.4e-66 257.3 230 62.2
AUR62012864 Chenopodium quinoa HOM05D007059 ORTHO05D009155 1.4e-66 257.3 225 59.6
Thhalv10021482m.g Eutrema salsugineum HOM05D007059 ORTHO05D009155 1.4e-66 257.3 227 61.7
CARHR095430 Cardamine hirsuta HOM05D007059 ORTHO05D009155 2.3e-66 256.5 229 61.6
Haze_11738 Corylus avellana HOM05D007059 ORTHO05D009155 2.3e-66 256.5 208 65.9
arahy.Tifrunner.gnm1.ann1.NRJ0Q8 Arachis hypogaea HOM05D007059 ORTHO05D009155 3.1e-66 256.1 220 61.4
arahy.Tifrunner.gnm1.ann1.PC0HA4 Arachis hypogaea HOM05D007059 ORTHO05D009155 3.1e-66 256.1 220 61.4
ECA234G4546 Erigeron canadensis HOM05D007059 ORTHO05D009155 4.0e-66 255.8 226 61.5
Lsat_1_v5_gn_4_26421 Lactuca sativa HOM05D007059 ORTHO05D009155 6.8e-66 255.0 228 61.4
Duzib251G0490 Durio zibethinus HOM05D007059 ORTHO05D009155 1.5e-65 253.8 234 61.5
MSTRG.2053 Avicennia marina HOM05D007059 ORTHO05D009155 2.6e-65 253.1 230 63.0
EL10Ac9g22903 Beta vulgaris HOM05D007059 ORTHO05D009155 5.8e-65 251.9 225 58.7
TWI77G0260 Tripterygium wilfordii HOM05D007059 ORTHO05D009155 2.2e-64 250.0 202 66.8
A01p34850 Brassica napus HOM05D007059 ORTHO05D009155 4.1e-63 245.7 159 77.4
BraA01t03568Z Brassica rapa HOM05D007059 ORTHO05D009155 4.1e-63 245.7 159 77.4
Aa31LG8G6740 Aethionema arabicum HOM05D007059 ORTHO05D009155 7.1e-63 245.0 288 49.7
CANSAT35G1437 Cannabis sativa HOM05D007059 ORTHO05D009155 1.6e-62 243.8 150 81.3
unitig_27.g25281 Utricularia gibba HOM05D007059 ORTHO05D009155 1.6e-62 243.8 171 71.9
HPP92_002491 Vanilla planifolia HOM05D007059 ORTHO05D009155 3.5e-62 242.7 212 64.6
HPP92_002544 Vanilla planifolia HOM05D007059 ORTHO05D009155 3.5e-62 242.7 212 64.6
Cpa.g.sc298.2 Carica papaya HOM05D007059 ORTHO05D009155 1.3e-61 240.7 222 61.7
ATR0124G031 Amborella trichopoda HOM05D007059 ORTHO05D009155 3.3e-60 236.1 137 80.3
Oeu027905.1 Olea europaea HOM05D007059 ORTHO05D009155 8.1e-59 231.5 150 76.7
Migut.E00613 Erythranthe guttata HOM05D007059 ORTHO05D009155 4.4e-57 225.7 208 60.1
Hund08500 Selenicereus undatus HOM05D007059 ORTHO05D009155 3.8e-56 222.6 210 59.5
Zm00001eb259420 Zea mays HOM05D007059 ORTHO05D009155 3.8e-56 222.6 128 82.0
THA.LOC104801903 Tarenaya hassleriana HOM05D007059 ORTHO05D009155 2.7e-54 216.5 172 66.3
Pp3c2_14430 Physcomitrium patens HOM05D007059 ORTHO05D009155 6.6e-53 211.8 160 65.6
AagrBONN_evm.TU.Sc2ySwM_344.1288 Anthoceros agrestis HOM05D007059 ORTHO05D009155 1.9e-52 210.3 151 66.9
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 1.9e-52 210.3 140 75.0
Pp3c10_16080 Physcomitrium patens HOM05D007059 ORTHO05D009155 4.3e-52 209.1 175 60.6
Dinv01917 Davidia involucrata HOM05D007059 ORTHO05D009155 1.6e-51 207.2 227 53.7
SGA_v2.0_scaffold88G27235 Striga asiatica HOM05D007059 ORTHO05D009155 6.2e-51 205.3 151 69.5
SMO114G0039 Selaginella moellendorffii HOM05D007059 ORTHO05D009155 5.2e-50 202.2 125 76.8
Mapoly0055s0010 Marchantia polymorpha HOM05D007059 ORTHO05D009155 1.1e-47 194.5 152 63.2
Actinidia13703 Actinidia chinensis HOM05D007059 ORTHO05D009155 3.0e-45 186.4 167 59.9
PGR031G0357 Punica granatum HOM05D007059 ORTHO05D009155 1.6e-43 180.6 227 48.0
CDE04G0067 Ceratophyllum demersum HOM05D007059 ORTHO05D009155 2.3e-37 160.2 131 65.6
CBR_g48375 Chara braunii HOM05D007059 ORTHO05D009155 5.6e-36 155.6 123 57.7
CsaV3_5G013210 Cucumis sativus L. HOM05D007059 ORTHO05D009155 1.6e-35 154.1 180 50.0
AT3G19900 Arabidopsis thaliana HOM05D007059 ORTHO05D009155 4.5e-25 119.4 161 47.2
Actinidia14379 Actinidia chinensis HOM05D007059 ORTHO05D009155 1.4e-23 114.4 56 92.9
BolC5t33201H Brassica oleracea HOM05D007059 ORTHO05D009155 7.1e-23 112.1 84 70.2
SEGI_27177 Sequoiadendron giganteum HOM05D007059 ORTHO05D009155 1.5e-20 104.4 71 69.0
Cre01.g007050 Chlamydomonas reinhardtii HOM05D007059 ORTHO05D009155 4.5e-17 92.8 115 42.6
SMO364G0884 Selaginella moellendorffii HOM05D007059 ORTHO05D009155 2.9e-16 90.1 67 65.7
Cre03.g197850 Chlamydomonas reinhardtii HOM05D007059 ORTHO05D034487 1.8e-13 80.9 113 35.4
BraA05t21808Z Brassica rapa HOM05D007059 ORTHO05D040342 6.3e-11 72.4 45 82.2
MCO14G049 Micromonas commoda HOM05D007059 ORTHO05D009155 4.1e-10 69.7 101 35.6
A05p29230 Brassica napus HOM05D007059 ORTHO05D040342 5.3e-10 69.3 45 80.0
Hma1.2p1_0232F.1_g097690 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 1.7e-08 64.3 109 36.7


User provided reference genes

Program Settings