Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 9.1e-84 313.5 160 100.0
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.5e-54 216.5 146 74.7
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 4.4e-54 214.9 143 73.4
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 1.3e-53 213.4 143 72.0
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 1.3e-53 213.4 147 71.4
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 2.9e-53 212.2 143 71.3
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 6.4e-53 211.1 142 73.9
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.4e-52 209.9 143 72.0
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.4e-52 209.9 139 73.4
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 1.9e-52 209.5 144 69.4
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.9e-52 209.5 149 71.8
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 3.2e-52 208.8 145 71.0
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 4.1e-52 208.4 144 69.4
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 5.4e-52 208.0 148 68.2
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 7.1e-52 207.6 144 70.1
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 7.1e-52 207.6 146 67.8
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 9.2e-52 207.2 145 69.7
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.2e-51 206.8 143 70.6
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 1.6e-51 206.5 144 69.4
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.6e-51 206.5 143 69.9
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 2.7e-51 205.7 146 66.4
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 2.7e-51 205.7 143 68.5
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 3.5e-51 205.3 144 66.7
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 3.5e-51 205.3 144 66.7
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 3.5e-51 205.3 142 71.1
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 4.6e-51 204.9 139 69.1
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 4.6e-51 204.9 143 68.5
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 6.0e-51 204.5 143 67.8
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 6.0e-51 204.5 140 70.7
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 6.0e-51 204.5 140 70.7
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 7.8e-51 204.1 144 68.8
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 7.8e-51 204.1 138 70.3
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 1.0e-50 203.8 143 68.5
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.0e-50 203.8 143 68.5
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.0e-50 203.8 138 70.3
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.0e-50 203.8 138 70.3
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 1.0e-50 203.8 143 69.9
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.0e-50 203.8 145 68.3
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.0e-50 203.8 143 71.3
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 1.3e-50 203.4 137 70.1
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.3e-50 203.4 144 66.7
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 1.3e-50 203.4 144 68.1
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 2.3e-50 202.6 143 67.1
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 2.3e-50 202.6 141 69.5
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 2.3e-50 202.6 143 67.8
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 3.0e-50 202.2 143 67.8
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 3.9e-50 201.8 144 69.4
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 3.9e-50 201.8 180 58.9
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 3.9e-50 201.8 141 68.1
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 5.1e-50 201.4 146 64.4
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 5.1e-50 201.4 145 67.6
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 8.6e-50 200.7 140 67.9
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 1.1e-49 200.3 144 66.0
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 1.1e-49 200.3 145 67.6
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.1e-49 200.3 144 67.4
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.9e-49 199.5 144 68.1
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 2.5e-49 199.1 144 65.3
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 2.5e-49 199.1 138 68.8
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 2.5e-49 199.1 143 66.4
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 3.3e-49 198.7 146 65.8
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 3.3e-49 198.7 143 67.8
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 5.6e-49 198.0 143 65.0
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 7.3e-49 197.6 146 63.7
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 7.3e-49 197.6 143 66.4
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 9.5e-49 197.2 143 66.4
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 9.5e-49 197.2 141 68.1
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 9.5e-49 197.2 141 67.4
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 9.5e-49 197.2 140 67.1
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 1.2e-48 196.8 135 70.4
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.6e-48 196.4 143 65.7
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 1.6e-48 196.4 138 66.7
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 1.6e-48 196.4 139 69.1
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 2.1e-48 196.1 142 66.9
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 2.8e-48 195.7 141 64.5
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 3.6e-48 195.3 142 65.5
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 3.6e-48 195.3 138 67.4
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 4.7e-48 194.9 143 64.3
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 4.7e-48 194.9 149 63.8
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 6.2e-48 194.5 146 63.7
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 8.1e-48 194.1 146 64.4
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 1.1e-47 193.7 144 65.3
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 1.4e-47 193.4 143 65.0
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 1.4e-47 193.4 143 62.9
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 2.4e-47 192.6 145 66.9
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 3.1e-47 192.2 162 60.5
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 5.2e-47 191.4 145 66.2
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 6.8e-47 191.0 146 62.3
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 8.9e-47 190.7 143 63.6
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 8.9e-47 190.7 143 63.6
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 1.2e-46 190.3 141 66.0
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-46 189.9 143 63.6
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.5e-46 189.9 132 68.9
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 1.5e-46 189.9 121 73.6
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 2.0e-46 189.5 143 63.6
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 2.0e-46 189.5 145 65.5
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 2.6e-46 189.1 144 66.0
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 3.4e-46 188.7 144 64.6
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 5.8e-46 188.0 121 75.2
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 7.6e-46 187.6 145 68.3
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 7.6e-46 187.6 144 61.8
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.3e-45 186.8 145 64.8
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 2.2e-45 186.0 144 61.1
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 2.9e-45 185.7 143 64.3
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 6.4e-45 184.5 144 61.8
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.1e-44 183.7 148 61.5
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 1.4e-44 183.3 144 65.3
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.9e-44 183.0 144 63.9
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.9e-44 183.0 144 63.9
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 1.9e-44 183.0 144 64.6
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 7.1e-44 181.0 141 62.4
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 1.2e-43 180.3 159 57.2
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 2.1e-43 179.5 121 70.2
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 2.1e-43 179.5 120 70.0
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 2.7e-43 179.1 132 65.2
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 3.5e-43 178.7 117 73.5
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.6e-43 178.3 143 63.6
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 1.7e-42 176.4 121 70.2
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 3.0e-42 175.6 121 68.6
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 5.1e-42 174.9 143 62.9
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 6.6e-42 174.5 152 55.9
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 2.5e-41 172.6 119 70.6
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 2.5e-41 172.6 119 70.6
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.3e-41 171.8 111 71.2
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 9.6e-41 170.6 141 58.2
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 2.8e-40 169.1 207 46.9
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 2.8e-40 169.1 141 56.7
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 2.8e-40 169.1 134 56.7
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 6.2e-40 167.9 147 55.8
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.3e-37 160.2 134 59.0
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 2.4e-36 156.0 150 51.3
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 7.1e-36 154.5 109 64.2
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 1.2e-35 153.7 117 62.4
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.1e-33 147.1 100 65.0
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.6e-33 144.8 133 55.6
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.6e-33 144.8 133 55.6
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 2.8e-32 142.5 141 53.2
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.8e-29 132.1 132 50.8
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 6.0e-27 124.8 99 61.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 6.0e-27 124.8 99 60.6
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 6.7e-26 121.3 90 65.6
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 3.3e-25 119.0 93 60.2
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 1.6e-24 116.7 139 44.6
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 1.6e-24 116.7 138 44.9
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.4e-22 109.0 127 45.7
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 4.5e-22 108.6 136 41.9
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 8.4e-21 104.4 135 41.5
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.4e-20 103.6 143 43.4
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 7.9e-19 97.8 130 42.3
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 1.3e-16 90.5 132 37.9
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 2.1e-16 89.7 65 63.1
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 2.8e-16 89.4 59 67.8
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.7e-16 89.0 135 36.3
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.0e-14 83.2 113 37.2
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 5.8e-14 81.6 55 65.5
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 2.2e-13 79.7 98 45.9
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 8.4e-13 77.8 55 70.9
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 8.4e-13 77.8 55 70.9
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 8.4e-13 77.8 55 70.9
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 1.1e-12 77.4 62 61.3
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 1.1e-12 77.4 107 37.4
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 7.1e-12 74.7 112 38.4
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 3.0e-10 69.3 49 65.3
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 5.1e-10 68.6 100 38.0
Rhsim03G0265300 Rhododendron simsii HOM05D001472 ORTHO05D002655 4.8e-08 62.0 70 52.9
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 9.0e-07 57.8 99 34.3


User provided reference genes

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