Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24823 Nelumbo nucifera HOM05D002155 ORTHO05D002215 2.9e-67 258.5 132 100.0
Nn3g21549 Nelumbo nucifera HOM05D002155 ORTHO05D002215 1.5e-60 236.1 126 93.7
TAR381G0832 Trochodendron aralioides HOM05D002155 ORTHO05D002215 4.2e-10 68.6 67 56.7
CSS0028832 Camellia sinensis var. sinensis HOM05D002155 ORTHO05D002215 5.5e-10 68.2 67 50.7
Lj2A487T64 Lonicera japonica HOM05D002155 ORTHO05D002215 5.5e-10 68.2 67 52.2
Atru.chr3.927 Acer truncatum HOM05D002155 ORTHO05D002215 7.2e-10 67.8 63 54.0
PSO541G2750 Papaver somniferum HOM05D002155 ORTHO05D002215 9.4e-10 67.4 59 57.6
PSO675G5164 Papaver somniferum HOM05D002155 ORTHO05D002215 9.4e-10 67.4 59 57.6
A01p02960 Brassica napus HOM05D002155 ORTHO05D002215 1.2e-09 67.0 67 53.7
C01p03310 Brassica napus HOM05D002155 ORTHO05D002215 1.2e-09 67.0 67 53.7
BraA01t00279Z Brassica rapa HOM05D002155 ORTHO05D002215 1.2e-09 67.0 67 53.7
CANSAT25G3751 Cannabis sativa HOM05D002155 ORTHO05D002215 1.6e-09 66.6 67 53.7
FAN20G0476 Fragaria x ananassa HOM05D002155 ORTHO05D002215 2.1e-09 66.2 67 52.2
RcHm_v2.0_Chr6g0303811 Rosa chinensis HOM05D002155 ORTHO05D002215 2.1e-09 66.2 67 52.2
Actinidia22931 Actinidia chinensis HOM05D002155 ORTHO05D002215 2.7e-09 65.9 55 61.8
Actinidia17395 Actinidia chinensis HOM05D002155 ORTHO05D002215 3.6e-09 65.5 67 53.7
COL.COLO4_22510 Corchorus olitorius HOM05D002155 ORTHO05D002215 3.6e-09 65.5 67 53.7
Hma1.2p1_0552F.1_g177660 Hydrangea macrophylla HOM05D002155 ORTHO05D002215 3.6e-09 65.5 63 49.2
Prupe.7G176400 Prunus persica HOM05D002155 ORTHO05D002215 3.6e-09 65.5 61 52.5
Rhsim10G0203800 Rhododendron simsii HOM05D002155 ORTHO05D002215 3.6e-09 65.5 67 50.7
TPR.G25104 Trifolium pratense HOM05D002155 ORTHO05D002215 3.6e-09 65.5 67 52.2
C03p80870 Brassica napus HOM05D002155 ORTHO05D002215 4.7e-09 65.1 67 52.2
BolC1t00316H Brassica oleracea HOM05D002155 ORTHO05D002215 4.7e-09 65.1 67 52.2
BraA08t34124Z Brassica rapa HOM05D002155 ORTHO05D002215 4.7e-09 65.1 67 52.2
CANSAT25G3011 Cannabis sativa HOM05D002155 ORTHO05D002215 4.7e-09 65.1 67 46.3
CARHR244090 Cardamine hirsuta HOM05D002155 ORTHO05D002215 4.7e-09 65.1 67 52.2
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 4.7e-09 65.1 67 49.3
Duzib147G1330 Durio zibethinus HOM05D002155 ORTHO05D002215 4.7e-09 65.1 67 52.2
FAN27G0525 Fragaria x ananassa HOM05D002155 ORTHO05D002215 4.7e-09 65.1 67 50.7
GSVIVG01006259001 Vitis vinifera HOM05D002155 ORTHO05D002215 4.7e-09 65.1 67 52.2
AL7G15350 Arabidopsis lyrata HOM05D002155 ORTHO05D002215 6.1e-09 64.7 67 52.2
AT4G35750 Arabidopsis thaliana HOM05D002155 ORTHO05D002215 6.1e-09 64.7 67 52.2
Carub.0007s0450 Capsella rubella HOM05D002155 ORTHO05D002215 6.1e-09 64.7 67 52.2
Thhalv10026273m.g Eutrema salsugineum HOM05D002155 ORTHO05D002215 6.1e-09 64.7 67 52.2
FvH4_1g10910 Fragaria vesca HOM05D002155 ORTHO05D002215 6.1e-09 64.7 61 52.5
FAN19G2879 Fragaria x ananassa HOM05D002155 ORTHO05D002215 6.1e-09 64.7 61 52.5
FAN26G1215 Fragaria x ananassa HOM05D002155 ORTHO05D002215 6.1e-09 64.7 61 52.5
Lalb_Chr09g0321381 Lupinus albus HOM05D002155 ORTHO05D004763 6.1e-09 64.7 76 46.1
Sp7g33510 Schrenkiella parvula HOM05D002155 ORTHO05D002215 6.1e-09 64.7 67 52.2
Aa31LG6G12700 Aethionema arabicum HOM05D002155 ORTHO05D002215 8.0e-09 64.3 67 50.7
Aqoxy6G01890 Aquilegia oxysepala HOM05D002155 ORTHO05D002215 8.0e-09 64.3 61 54.1
Cpa.g.sc6.339 Carica papaya HOM05D002155 ORTHO05D002215 8.0e-09 64.3 67 55.2
Duzib041G0226 Durio zibethinus HOM05D002155 ORTHO05D002215 8.0e-09 64.3 67 49.3
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 8.0e-09 64.3 54 59.3
RcHm_v2.0_Chr2g0098171 Rosa chinensis HOM05D002155 ORTHO05D002215 8.0e-09 64.3 54 59.3
BolC3t20341H Brassica oleracea HOM05D002155 ORTHO05D002215 1.0e-08 63.9 67 49.3
Manes.05G141500 Manihot esculenta HOM05D002155 ORTHO05D002215 1.0e-08 63.9 65 52.3
Thecc.01G010000 Theobroma cacao HOM05D002155 ORTHO05D002215 1.0e-08 63.9 74 48.6
Dinv39565 Davidia involucrata HOM05D002155 ORTHO05D002215 1.4e-08 63.5 67 52.2
Medtr5g023210 Medicago truncatula HOM05D002155 ORTHO05D002215 1.4e-08 63.5 67 50.7
CiPaw.07G005700 Carya illinoinensis HOM05D002155 ORTHO05D002215 1.8e-08 63.2 67 50.7
FAN23G0396 Fragaria x ananassa HOM05D002155 ORTHO05D002215 1.8e-08 63.2 61 50.8
Lj2g0014974 Lotus japonicus HOM05D002155 ORTHO05D002215 1.8e-08 63.2 67 50.7
MD08G1006200 Malus domestica HOM05D002155 ORTHO05D002215 1.8e-08 63.2 62 51.6
Manes.01G152100 Manihot esculenta HOM05D002155 ORTHO05D002215 1.8e-08 63.2 74 45.9
THA.LOC104807521 Tarenaya hassleriana HOM05D002155 ORTHO05D002215 1.8e-08 63.2 67 52.2
Ciclev10026500m.g Citrus clementina HOM05D002155 ORTHO05D002215 2.3e-08 62.8 67 49.3
Glyma.01G161200 Glycine max HOM05D002155 ORTHO05D002215 2.3e-08 62.8 61 50.8
Lalb_Chr05g0212071 Lupinus albus HOM05D002155 ORTHO05D002215 2.3e-08 62.8 67 50.7
MBI08_g07885_MAGBIO Magnolia biondii HOM05D002155 ORTHO05D002215 3.0e-08 62.4 67 53.7
Potri.002G014700 Populus trichocarpa HOM05D002155 ORTHO05D002215 3.0e-08 62.4 67 49.3
Dinv08541 Davidia involucrata HOM05D002155 ORTHO05D002215 4.0e-08 62.0 54 53.7
MD15G1005600 Malus domestica HOM05D002155 ORTHO05D002215 4.0e-08 62.0 62 51.6
Psat2g151120 Pisum sativum HOM05D002155 ORTHO05D002215 4.0e-08 62.0 67 47.8
vmacro20503 Vaccinium macrocarpon HOM05D002155 ORTHO05D002215 4.0e-08 62.0 67 49.3
FAN15G3614 Fragaria x ananassa HOM05D002155 ORTHO05D002215 5.2e-08 61.6 67 49.3
Ca_24952_v3 Cicer arietinum L. HOM05D002155 ORTHO05D002215 8.8e-08 60.8 67 47.8
Ca_30718_v3 Cicer arietinum L. HOM05D002155 ORTHO05D002215 8.8e-08 60.8 67 47.8
Manes.02G111300 Manihot esculenta HOM05D002155 ORTHO05D002215 8.8e-08 60.8 69 49.3
TAR625G0102 Trochodendron aralioides HOM05D002155 ORTHO05D002215 8.8e-08 60.8 67 50.7
Duzib187G1544 Durio zibethinus HOM05D002155 ORTHO05D002215 1.2e-07 60.5 67 49.3
Phvul.002G112800 Phaseolus vulgaris HOM05D002155 ORTHO05D002215 1.2e-07 60.5 62 53.2
GSVIVG01008718001 Vitis vinifera HOM05D002155 ORTHO05D002215 1.2e-07 60.5 67 49.3
TWI12G0772 Tripterygium wilfordii HOM05D002155 ORTHO05D002215 2.0e-07 59.7 66 48.5
CAN.G890.16 Capsicum annuum HOM05D002155 ORTHO05D002215 2.6e-07 59.3 67 44.8
CiPaw.07G142300 Carya illinoinensis HOM05D002155 ORTHO05D002215 2.6e-07 59.3 61 49.2
HanXRQChr16g0531621 Helianthus annuus HOM05D002155 ORTHO05D002215 2.6e-07 59.3 67 49.3
QL02p013367 Quercus lobata HOM05D002155 ORTHO05D002215 2.6e-07 59.3 67 49.3
VMungo1215G1149 Vigna mungo HOM05D002155 ORTHO05D002215 2.6e-07 59.3 68 50.0
MD02G1122200 Malus domestica HOM05D002155 ORTHO05D002215 3.3e-07 58.9 67 43.3
Sabra02G0011700 Salix brachista HOM05D002155 ORTHO05D002215 3.3e-07 58.9 67 46.3
Thecc.08G054000 Theobroma cacao HOM05D002155 ORTHO05D002215 3.3e-07 58.9 67 43.3
Ciclev10002541m.g Citrus clementina HOM05D002155 ORTHO05D002215 4.4e-07 58.5 67 44.8
Hma1.2p1_2322F.1_g319930 Hydrangea macrophylla HOM05D002155 ORTHO05D002215 4.4e-07 58.5 67 46.3
MD15G1236100 Malus domestica HOM05D002155 ORTHO05D002215 4.4e-07 58.5 67 43.3
Oeu017910.1 Olea europaea HOM05D002155 ORTHO05D002215 4.4e-07 58.5 103 38.8
QL06p052330 Quercus lobata HOM05D002155 ORTHO05D002215 4.4e-07 58.5 54 50.0
Gohir.A01G108600 Gossypium hirsutum HOM05D002155 ORTHO05D002215 5.7e-07 58.2 74 43.2
HanXRQChr14g0442101 Helianthus annuus HOM05D002155 ORTHO05D002215 5.7e-07 58.2 67 46.3
Lsat_1_v5_gn_2_75201 Lactuca sativa HOM05D002155 ORTHO05D002215 5.7e-07 58.2 66 47.0
Sc16g0001770 Simmondsia chinensis HOM05D002155 ORTHO05D002215 5.7e-07 58.2 55 49.1
PGSC0003DMG400001579 Solanum tuberosum HOM05D002155 ORTHO05D002215 5.7e-07 58.2 54 50.0
Actinidia17026 Actinidia chinensis HOM05D002155 ORTHO05D002215 7.5e-07 57.8 66 48.5
Glyma.11G082500 Glycine max HOM05D002155 ORTHO05D002215 7.5e-07 57.8 61 47.5
Gohir.A02G175300 Gossypium hirsutum HOM05D002155 ORTHO05D002215 7.5e-07 57.8 67 44.8
Gohir.D03G004425 Gossypium hirsutum HOM05D002155 ORTHO05D002215 7.5e-07 57.8 67 44.8
Gohir.D03G004500 Gossypium hirsutum HOM05D002155 ORTHO05D002215 7.5e-07 57.8 67 44.8
Gorai.003G004800 Gossypium raimondii HOM05D002155 ORTHO05D002215 7.5e-07 57.8 67 44.8
HanXRQChr07g0192521 Helianthus annuus HOM05D002155 ORTHO05D002215 7.5e-07 57.8 66 50.0
Solyc02g083250.3 Solanum lycopersicum HOM05D002155 ORTHO05D002215 7.5e-07 57.8 54 50.0
Sopen02g028040 Solanum pennellii HOM05D002155 ORTHO05D002215 7.5e-07 57.8 54 50.0
Atru.chr13.194 Acer truncatum HOM05D002155 ORTHO05D002215 9.7e-07 57.4 67 46.3
COL.COLO4_26064 Corchorus olitorius HOM05D002155 ORTHO05D002215 9.7e-07 57.4 67 43.3
Potri.005G107300 Populus trichocarpa HOM05D002155 ORTHO05D002215 9.7e-07 57.4 67 43.3
Cfa007041 Carpinus fangiana HOM05D002155 ORTHO05D002215 1.3e-06 57.0 67 43.3
Haze_03688 Corylus avellana HOM05D002155 ORTHO05D002215 1.3e-06 57.0 67 44.8
Gohir.D12G058001 Gossypium hirsutum HOM05D002155 ORTHO05D002215 1.3e-06 57.0 75 40.0
HanXRQChr03g0067201 Helianthus annuus HOM05D002155 ORTHO05D002215 1.3e-06 57.0 61 49.2
Peaxi162Scf00300g00117 Petunia axillaris HOM05D002155 ORTHO05D002215 1.3e-06 57.0 54 48.1
Potri.005G246800 Populus trichocarpa HOM05D002155 ORTHO05D002215 1.3e-06 57.0 54 51.9
arahy.Tifrunner.gnm1.ann1.PGUC9R Arachis hypogaea HOM05D002155 ORTHO05D002215 1.7e-06 56.6 57 49.1
arahy.Tifrunner.gnm1.ann1.Q1RH66 Arachis hypogaea HOM05D002155 ORTHO05D002215 1.7e-06 56.6 57 49.1
Haze_22728 Corylus avellana HOM05D002155 ORTHO05D002215 1.7e-06 56.6 55 52.7
Dinv31907 Davidia involucrata HOM05D002155 ORTHO05D002215 1.7e-06 56.6 67 47.8
Sabra05G0087900 Salix brachista HOM05D002155 ORTHO05D002215 1.7e-06 56.6 67 43.3
Gorai.002G120400 Gossypium raimondii HOM05D002155 ORTHO05D002215 2.2e-06 56.2 74 41.9
Nitab4.5_0003280g0030 Nicotiana tabacum HOM05D002155 ORTHO05D002215 2.2e-06 56.2 74 40.5
CsaV3_3G000430 Cucumis sativus L. HOM05D002155 ORTHO05D002215 2.8e-06 55.8 67 46.3
Gohir.A12G058150 Gossypium hirsutum HOM05D002155 ORTHO05D002215 2.8e-06 55.8 54 51.9
MSTRG.25282 Avicennia marina HOM05D002155 ORTHO05D002215 3.7e-06 55.5 67 44.8
Cfa014021 Carpinus fangiana HOM05D002155 ORTHO05D002215 3.7e-06 55.5 55 50.9
Eucgr.J02500 Eucalyptus grandis HOM05D002155 ORTHO05D002215 3.7e-06 55.5 67 40.3
Nitab4.5_0001696g0070 Nicotiana tabacum HOM05D002155 ORTHO05D002215 3.7e-06 55.5 54 48.1
Gohir.D01G095400 Gossypium hirsutum HOM05D002155 ORTHO05D002215 4.8e-06 55.1 74 41.9
Gorai.008G061200 Gossypium raimondii HOM05D002155 ORTHO05D002215 4.8e-06 55.1 74 41.9
ClCG10G000410 Citrullus lanatus HOM05D002155 ORTHO05D002215 6.3e-06 54.7 54 53.7
Hund14177 Selenicereus undatus HOM05D002155 ORTHO05D002215 6.3e-06 54.7 54 42.6
Solyc04g082050.3 Solanum lycopersicum HOM05D002155 ORTHO05D002215 6.3e-06 54.7 67 43.3
PGSC0003DMG400009889 Solanum tuberosum HOM05D002155 ORTHO05D002215 6.3e-06 54.7 67 43.3
MELO3C013738.2 Cucumis melo HOM05D002155 ORTHO05D002215 8.2e-06 54.3 67 44.8
ECA238G3458 Erigeron canadensis HOM05D002155 ORTHO05D002215 8.2e-06 54.3 66 45.5
Nitab4.5_0004259g0030 Nicotiana tabacum HOM05D002155 ORTHO05D002215 8.2e-06 54.3 54 46.3
Sed0014795 Sechium edule HOM05D002155 ORTHO05D002215 8.2e-06 54.3 54 51.9


User provided reference genes

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