Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24794 Nelumbo nucifera HOM05D000213 ORTHO05D280436 3.7e-42 174.5 90 100.0
Nn1g04751 Nelumbo nucifera HOM05D000213 ORTHO05D000985 2.5e-14 82.0 52 78.8
Nn5g30385 Nelumbo nucifera HOM05D000213 ORTHO05D000985 2.8e-13 78.6 52 75.0
TAR628G0967 Trochodendron aralioides HOM05D000213 ORTHO05D000985 2.4e-12 75.5 60 65.0
Cfa004048 Carpinus fangiana HOM05D000213 ORTHO05D000985 5.3e-12 74.3 61 65.6
Haze_15363 Corylus avellana HOM05D000213 ORTHO05D000985 5.3e-12 74.3 61 65.6
Duzib147G1551 Durio zibethinus HOM05D000213 ORTHO05D000985 2.6e-11 72.0 52 71.2
CiPaw.01G014300 Carya illinoinensis HOM05D000213 ORTHO05D000985 4.4e-11 71.2 52 71.2
Thecc.01G061900 Theobroma cacao HOM05D000213 ORTHO05D000985 4.4e-11 71.2 52 71.2
GSVIVG01022067001 Vitis vinifera HOM05D000213 ORTHO05D000985 5.8e-11 70.9 53 71.7
Duzib187G1286 Durio zibethinus HOM05D000213 ORTHO05D000985 7.6e-11 70.5 52 71.2
Prupe.6G230600 Prunus persica HOM05D000213 ORTHO05D000985 1.7e-10 69.3 52 67.3
MD15G1287300 Malus domestica HOM05D000213 ORTHO05D000985 2.2e-10 68.9 52 67.3
Potri.007G047400 Populus trichocarpa HOM05D000213 ORTHO05D000985 2.2e-10 68.9 57 64.9
TAR625G0234 Trochodendron aralioides HOM05D000213 ORTHO05D000985 2.9e-10 68.6 52 63.5
MD02G1177500 Malus domestica HOM05D000213 ORTHO05D000985 3.8e-10 68.2 61 62.3
Psat4g085000 Pisum sativum HOM05D000213 ORTHO05D000985 4.9e-10 67.8 65 58.5
Manes.13G119700 Manihot esculenta HOM05D000213 ORTHO05D000985 6.4e-10 67.4 53 69.8
Sabra07G0042300 Salix brachista HOM05D000213 ORTHO05D000985 6.4e-10 67.4 57 63.2
QL06p040302 Quercus lobata HOM05D000213 ORTHO05D000985 8.4e-10 67.0 62 61.3
TAR376G0141 Trochodendron aralioides HOM05D000213 ORTHO05D000985 1.1e-09 66.6 56 64.3
Cfa009961 Carpinus fangiana HOM05D000213 ORTHO05D000985 1.4e-09 66.2 54 61.1
Potri.005G141400 Populus trichocarpa HOM05D000213 ORTHO05D000985 1.4e-09 66.2 57 61.4
vmacro21490 Vaccinium macrocarpon HOM05D000213 ORTHO05D000985 1.4e-09 66.2 52 63.5
ClCG05G020160 Citrullus lanatus HOM05D000213 ORTHO05D000985 1.9e-09 65.9 56 60.7
MELO3C016774.2 Cucumis melo HOM05D000213 ORTHO05D000985 1.9e-09 65.9 56 60.7
CsaV3_4G034570 Cucumis sativus L. HOM05D000213 ORTHO05D000985 1.9e-09 65.9 56 60.7
RcHm_v2.0_Chr2g0106361 Rosa chinensis HOM05D000213 ORTHO05D000985 1.9e-09 65.9 52 63.5
Dinv26853 Davidia involucrata HOM05D000213 ORTHO05D000985 3.2e-09 65.1 52 69.2
CiPaw.02G007000 Carya illinoinensis HOM05D000213 ORTHO05D000985 4.2e-09 64.7 53 66.0
Haze_18062 Corylus avellana HOM05D000213 ORTHO05D000985 5.4e-09 64.3 54 61.1
Haze_18068 Corylus avellana HOM05D000213 ORTHO05D000985 5.4e-09 64.3 54 61.1
TWI73G0677 Tripterygium wilfordii HOM05D000213 ORTHO05D000985 5.4e-09 64.3 52 67.3
ClCG01G016980 Citrullus lanatus HOM05D000213 ORTHO05D000985 7.1e-09 63.9 53 64.2
FvH4_1g16480 Fragaria vesca HOM05D000213 ORTHO05D000985 7.1e-09 63.9 54 63.0
FAN19G1846 Fragaria x ananassa HOM05D000213 ORTHO05D000985 7.1e-09 63.9 54 63.0
AUR62038804 Chenopodium quinoa HOM05D000213 ORTHO05D000985 9.3e-09 63.5 53 62.3
AUR62043687 Chenopodium quinoa HOM05D000213 ORTHO05D000985 9.3e-09 63.5 53 62.3
Lj4C766T4 Lonicera japonica HOM05D000213 ORTHO05D000985 9.3e-09 63.5 52 63.5
Atru.chr13.744 Acer truncatum HOM05D000213 ORTHO05D000985 1.2e-08 63.2 50 66.0
Cc10_g04810 Coffea canephora HOM05D000213 ORTHO05D000985 1.2e-08 63.2 58 60.3
Sc15g0005900 Simmondsia chinensis HOM05D000213 ORTHO05D000985 1.2e-08 63.2 49 63.3
TWI09G0426 Tripterygium wilfordii HOM05D000213 ORTHO05D000985 1.6e-08 62.8 52 65.4
EL10As7g23779 Beta vulgaris HOM05D000213 ORTHO05D000985 2.1e-08 62.4 55 63.6
MELO3C007576.2 Cucumis melo HOM05D000213 ORTHO05D000985 2.7e-08 62.0 53 62.3
Duzib264G0290 Durio zibethinus HOM05D000213 ORTHO05D000985 2.7e-08 62.0 52 61.5
Sed0023573 Sechium edule HOM05D000213 ORTHO05D000985 2.7e-08 62.0 57 59.6
SGA_v2.0_scaffold28G11803 Striga asiatica HOM05D000213 ORTHO05D000985 2.7e-08 62.0 53 62.3
GSVIVG01009441001 Vitis vinifera HOM05D000213 ORTHO05D000985 2.7e-08 62.0 60 56.7
Medtr4g094908 Medicago truncatula HOM05D000213 ORTHO05D000985 3.5e-08 61.6 55 61.8
SalBow6G2562 Salvia bowleyana HOM05D000213 ORTHO05D000985 3.5e-08 61.6 62 58.1
CsaV3_6G043450 Cucumis sativus L. HOM05D000213 ORTHO05D000985 4.6e-08 61.2 78 47.4
Migut.N02732 Erythranthe guttata HOM05D000213 ORTHO05D000985 6.0e-08 60.8 62 61.3
FAN05G3897 Fragaria x ananassa HOM05D000213 ORTHO05D000985 6.0e-08 60.8 54 61.1
FAN23G0780 Fragaria x ananassa HOM05D000213 ORTHO05D000985 6.0e-08 60.8 54 61.1
FAN25G0194 Fragaria x ananassa HOM05D000213 ORTHO05D000985 6.0e-08 60.8 54 61.1
FAN26G1331 Fragaria x ananassa HOM05D000213 ORTHO05D000985 6.0e-08 60.8 54 61.1
FAN28G0251 Fragaria x ananassa HOM05D000213 ORTHO05D000985 6.0e-08 60.8 54 61.1
FAN28G1055 Fragaria x ananassa HOM05D000213 ORTHO05D000985 6.0e-08 60.8 54 61.1
Oeu044199.1 Olea europaea HOM05D000213 ORTHO05D000985 6.0e-08 60.8 49 63.3
TPR.G14579 Trifolium pratense HOM05D000213 ORTHO05D000985 6.0e-08 60.8 59 62.7
FAN07G2938 Fragaria x ananassa HOM05D000213 ORTHO05D000985 7.8e-08 60.5 54 61.1
Gohir.A11G196100 Gossypium hirsutum HOM05D000213 ORTHO05D000985 7.8e-08 60.5 54 66.7
Gohir.D11G202100 Gossypium hirsutum HOM05D000213 ORTHO05D000985 7.8e-08 60.5 54 66.7
Manes.12G107400 Manihot esculenta HOM05D000213 ORTHO05D000985 7.8e-08 60.5 52 65.4
Dinv39275 Davidia involucrata HOM05D000213 ORTHO05D000985 1.0e-07 60.1 53 62.3
VMungo1215G0378 Vigna mungo HOM05D000213 ORTHO05D000985 1.0e-07 60.1 61 55.7
FAN24G1396 Fragaria x ananassa HOM05D000213 ORTHO05D000985 1.3e-07 59.7 54 59.3
Manes.18G041000 Manihot esculenta HOM05D000213 ORTHO05D000985 1.3e-07 59.7 52 61.5
MSTRG.22245 Avicennia marina HOM05D000213 ORTHO05D000985 1.7e-07 59.3 56 57.1
Rhsim06G0054700 Rhododendron simsii HOM05D000213 ORTHO05D000985 1.7e-07 59.3 52 61.5
Glyma.17G168900 Glycine max HOM05D000213 ORTHO05D000985 2.3e-07 58.9 67 53.7
HanXRQChr16g0508961 Helianthus annuus HOM05D000213 ORTHO05D000985 2.3e-07 58.9 52 61.5
Manes.05G176800 Manihot esculenta HOM05D000213 ORTHO05D000985 2.3e-07 58.9 52 59.6
Phvul.002G016100 Phaseolus vulgaris HOM05D000213 ORTHO05D000985 2.3e-07 58.9 60 56.7
Lsat_1_v5_gn_1_22221 Lactuca sativa HOM05D000213 ORTHO05D000985 3.0e-07 58.5 52 57.7
Nitab4.5_0000017g0160 Nicotiana tabacum HOM05D000213 ORTHO05D000985 3.0e-07 58.5 54 61.1
Thecc.08G001900 Theobroma cacao HOM05D000213 ORTHO05D000985 3.9e-07 58.2 52 63.5
COL.COLO4_10123 Corchorus olitorius HOM05D000213 ORTHO05D000985 5.1e-07 57.8 52 63.5
Gorai.007G216700 Gossypium raimondii HOM05D000213 ORTHO05D000985 5.1e-07 57.8 54 64.8
Glyma.01G189100 Glycine max HOM05D000213 ORTHO05D000985 6.6e-07 57.4 62 58.1
HanXRQChr10g0286841 Helianthus annuus HOM05D000213 ORTHO05D000985 6.6e-07 57.4 61 54.1
Nitab4.5_0003316g0030 Nicotiana tabacum HOM05D000213 ORTHO05D000985 6.6e-07 57.4 54 59.3
Glyma.11G053100 Glycine max HOM05D000213 ORTHO05D000985 8.7e-07 57.0 60 60.0
Lalb_Chr05g0226261 Lupinus albus HOM05D000213 ORTHO05D000985 8.7e-07 57.0 59 54.2
Nitab4.5_0001603g0110 Nicotiana tabacum HOM05D000213 ORTHO05D000985 8.7e-07 57.0 50 62.0
SalBow7G2066 Salvia bowleyana HOM05D000213 ORTHO05D000985 8.7e-07 57.0 52 57.7
MSTRG.25072 Avicennia marina HOM05D000213 ORTHO05D000985 1.1e-06 56.6 49 59.2
Hund11142 Selenicereus undatus HOM05D000213 ORTHO05D000985 1.1e-06 56.6 56 58.9
Solyc04g078550.3 Solanum lycopersicum HOM05D000213 ORTHO05D000985 1.1e-06 56.6 52 57.7
Sopen04g032150 Solanum pennellii HOM05D000213 ORTHO05D000985 1.1e-06 56.6 52 57.7
PGSC0003DMG400007947 Solanum tuberosum HOM05D000213 ORTHO05D000985 1.1e-06 56.6 52 57.7
TWI53G1673 Tripterygium wilfordii HOM05D000213 ORTHO05D000985 1.1e-06 56.6 47 63.8
Atru.chr3.267 Acer truncatum HOM05D000213 ORTHO05D000985 1.5e-06 56.2 52 65.4
Sc02g0007490 Simmondsia chinensis HOM05D000213 ORTHO05D000985 1.5e-06 56.2 55 58.2
Aqoxy5G01171 Aquilegia oxysepala HOM05D000213 ORTHO05D000985 1.9e-06 55.8 52 55.8
Cpa.g.sc21.159 Carica papaya HOM05D000213 ORTHO05D000985 1.9e-06 55.8 52 57.7
Nitab4.5_0000929g0030 Nicotiana tabacum HOM05D000213 ORTHO05D000985 1.9e-06 55.8 54 61.1
Nitab4.5_0004730g0010 Nicotiana tabacum HOM05D000213 ORTHO05D000985 1.9e-06 55.8 52 57.7
Nitab4.5_0005992g0010 Nicotiana tabacum HOM05D000213 ORTHO05D000985 1.9e-06 55.8 52 57.7
Ah.08g220580 Amaranthus hybridus HOM05D000213 ORTHO05D000985 2.5e-06 55.5 54 61.1
Duzib116G0394 Durio zibethinus HOM05D000213 ORTHO05D000985 2.5e-06 55.5 52 59.6
ECA247G2166 Erigeron canadensis HOM05D000033 ORTHO05D003265 2.5e-06 55.5 52 55.8
Lsat_1_v5_gn_4_127960 Lactuca sativa HOM05D000213 ORTHO05D000985 2.5e-06 55.5 58 56.9
CiPaw.15G052500 Carya illinoinensis HOM05D000213 ORTHO05D000985 3.3e-06 55.1 50 54.0
Cc07_g06340 Coffea canephora HOM05D000213 ORTHO05D000985 3.3e-06 55.1 54 63.0
SGA_v2.0_scaffold14G06981 Striga asiatica HOM05D000213 ORTHO05D000985 3.3e-06 55.1 57 57.9
CAN.G370.27 Capsicum annuum HOM05D000213 ORTHO05D000985 5.6e-06 54.3 56 60.7
QL02p004033 Quercus lobata HOM05D000213 ORTHO05D000985 5.6e-06 54.3 56 55.4
Sabra05G0112800 Salix brachista HOM05D000213 ORTHO05D000985 5.6e-06 54.3 57 54.4
THA.LOC104800324 Tarenaya hassleriana HOM05D000213 ORTHO05D000985 7.3e-06 53.9 58 56.9
Cpa.g.sc55.104 Carica papaya HOM05D000213 ORTHO05D000985 9.6e-06 53.5 65 58.5
Dinv35930 Davidia involucrata HOM05D000213 ORTHO05D000985 9.6e-06 53.5 52 57.7
Duzib093G0694 Durio zibethinus HOM05D000213 ORTHO05D000985 9.6e-06 53.5 52 59.6
Gohir.D05G208300 Gossypium hirsutum HOM05D000213 ORTHO05D000985 9.6e-06 53.5 52 57.7


User provided reference genes

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