Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.3e-134 483.0 230 100.0
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 5.1e-128 461.1 226 96.5
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 2.0e-116 422.5 229 85.6
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.3e-115 419.9 226 85.4
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 4.9e-115 417.9 229 83.0
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 6.5e-115 417.5 230 83.9
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 8.4e-115 417.2 229 83.0
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.1e-114 416.8 223 85.2
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 1.9e-114 416.0 229 83.0
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 3.2e-114 415.2 229 82.5
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 4.2e-114 414.8 230 84.3
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 5.5e-114 414.5 225 85.8
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 1.2e-113 413.3 229 82.5
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 1.6e-113 412.9 225 84.4
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.1e-113 412.5 229 83.4
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 2.7e-113 412.1 221 86.0
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 3.5e-113 411.8 227 82.8
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 4.6e-113 411.4 221 86.0
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 6.0e-113 411.0 221 85.1
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 6.0e-113 411.0 225 83.1
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 6.0e-113 411.0 225 84.0
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 1.0e-112 410.2 225 83.6
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.0e-112 410.2 225 84.0
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.8e-112 409.5 227 85.5
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.8e-112 409.5 224 84.8
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 2.3e-112 409.1 227 85.0
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.3e-112 409.1 225 83.6
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 2.3e-112 409.1 225 83.6
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 3.9e-112 408.3 225 83.6
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 5.1e-112 407.9 225 83.6
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 6.7e-112 407.5 223 84.8
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 1.1e-111 406.8 221 86.0
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 1.1e-111 406.8 224 83.9
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 1.1e-111 406.8 224 83.9
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 2.5e-111 405.6 223 83.9
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 3.3e-111 405.2 225 83.6
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 3.3e-111 405.2 225 81.8
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 3.3e-111 405.2 225 83.1
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 3.3e-111 405.2 227 83.7
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 3.3e-111 405.2 225 82.2
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 4.3e-111 404.8 221 83.3
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 4.3e-111 404.8 237 81.0
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 7.4e-111 404.1 225 82.7
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 7.4e-111 404.1 224 83.9
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 7.4e-111 404.1 224 83.5
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.3e-110 403.3 225 82.7
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.6e-110 402.9 224 83.5
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.6e-110 402.9 249 76.3
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 2.2e-110 402.5 221 83.3
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 2.2e-110 402.5 224 83.5
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.8e-110 402.1 223 83.4
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 2.8e-110 402.1 225 82.7
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 2.8e-110 402.1 257 75.5
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 2.8e-110 402.1 223 82.5
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.7e-110 401.7 225 82.7
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 4.8e-110 401.4 224 83.5
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 6.3e-110 401.0 225 83.1
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 6.3e-110 401.0 224 82.6
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 6.3e-110 401.0 225 82.7
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 8.2e-110 400.6 224 82.6
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 8.2e-110 400.6 221 82.4
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 1.1e-109 400.2 221 84.2
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 1.1e-109 400.2 221 84.2
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 1.4e-109 399.8 221 85.1
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.8e-109 399.4 223 82.5
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 1.8e-109 399.4 224 83.0
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.1e-109 398.7 225 82.2
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 3.1e-109 398.7 216 85.6
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 5.3e-109 397.9 217 85.7
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 6.9e-109 397.5 224 80.8
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 6.9e-109 397.5 224 82.6
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 1.5e-108 396.4 224 82.6
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 1.5e-108 396.4 223 82.1
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.5e-108 396.4 215 84.2
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 2.0e-108 396.0 221 81.9
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 3.4e-108 395.2 225 82.2
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 4.5e-108 394.8 224 81.7
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 1.3e-107 393.3 224 82.6
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.2e-107 392.5 224 80.4
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.9e-107 392.1 221 81.4
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 2.9e-107 392.1 211 85.3
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 3.8e-107 391.7 224 82.1
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 6.5e-107 391.0 224 80.8
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 1.1e-106 390.2 221 83.7
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.4e-106 389.8 211 84.8
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.9e-106 389.4 225 80.9
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 1.9e-106 389.4 224 80.8
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 3.2e-106 388.7 225 80.4
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 4.2e-106 388.3 224 80.8
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 5.5e-106 387.9 224 82.1
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 9.4e-106 387.1 224 79.5
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 9.4e-106 387.1 224 79.9
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 1.6e-105 386.3 223 80.3
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 1.6e-105 386.3 223 80.3
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 1.6e-105 386.3 223 80.3
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 2.1e-105 386.0 225 80.0
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 2.7e-105 385.6 224 80.4
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 3.6e-105 385.2 224 79.5
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 3.6e-105 385.2 224 79.5
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 4.6e-105 384.8 227 78.4
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.1e-105 384.4 221 79.6
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 6.1e-105 384.4 224 77.2
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 7.9e-105 384.0 216 81.9
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.4e-104 383.3 225 80.0
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 1.8e-104 382.9 224 79.5
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 2.3e-104 382.5 224 79.9
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 2.3e-104 382.5 224 81.2
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 3.0e-104 382.1 222 78.4
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 3.9e-104 381.7 224 76.8
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 1.1e-103 380.2 224 79.5
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 1.1e-103 380.2 224 79.5
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 1.9e-103 379.4 224 79.0
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.9e-103 379.4 225 77.3
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.9e-103 379.4 279 67.0
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 2.5e-103 379.0 224 79.5
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 5.7e-103 377.9 225 78.7
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 1.5e-95 353.2 208 80.3
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 7.0e-93 344.4 218 69.3
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.0e-92 342.8 228 71.9
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 1.8e-88 329.7 223 67.3
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 4.4e-87 325.1 224 66.1
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 4.8e-86 321.6 217 65.9
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 2.5e-82 309.3 219 63.9
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 9.1e-77 290.8 164 85.4
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 2.7e-76 289.3 161 85.7
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 5.9e-76 288.1 169 77.5
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.2e-74 282.0 153 83.7
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 9.8e-71 270.8 220 56.8
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.7e-70 270.0 162 74.1
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 6.1e-65 251.5 131 84.0
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.2e-64 248.4 163 72.4
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 5.4e-61 238.4 211 55.9
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 5.0e-59 231.9 218 51.4
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 1.1e-58 230.7 128 82.8
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.2e-52 210.7 148 73.6
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.6e-52 210.3 115 80.9
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 1.3e-51 207.2 213 46.0
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 6.6e-51 204.9 136 74.3
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 3.3e-50 202.6 112 79.5
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 4.3e-42 175.6 130 59.2
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 6.8e-40 168.3 88 81.8
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 2.2e-38 163.3 102 76.5
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 8.6e-35 151.4 219 36.5
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 4.4e-31 139.0 97 73.2
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.7e-28 129.8 75 84.0
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 1.1e-26 124.4 134 47.8
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 5.6e-26 122.1 83 66.3
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 9.6e-26 121.3 66 84.8
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 4.8e-25 119.0 78 78.2
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 1.1e-24 117.9 61 90.2
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.7e-22 110.5 66 68.2
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 3.5e-20 102.8 61 82.0
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.3e-19 100.9 64 76.6
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 5.1e-19 99.0 61 78.7
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 1.1e-18 97.8 54 81.5
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.9e-18 97.1 61 77.0
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 1.3e-17 94.4 62 75.8
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 7.6e-15 85.1 100 46.0
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 9.9e-15 84.7 128 43.8
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 1.1e-13 81.3 54 75.9
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 4.6e-12 75.9 64 57.8
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 4.3e-10 69.3 43 81.4
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 2.0e-07 60.5 39 66.7
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.0e-06 58.2 35 77.1


User provided reference genes

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