Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24776 Nelumbo nucifera HOM05D000094 ORTHO05D278980 1.7e-91 339.3 171 100.0
Nn3g17116 Nelumbo nucifera HOM05D000094 ORTHO05D002063 1.0e-16 90.9 66 74.2
Nn4g23027 Nelumbo nucifera HOM05D000094 ORTHO05D002063 2.5e-15 86.3 66 71.2
GSVIVG01008070001 Vitis vinifera HOM05D000094 ORTHO05D002063 2.6e-12 76.3 66 57.6
Hund02672 Selenicereus undatus HOM05D000094 ORTHO05D002063 7.6e-12 74.7 66 60.6
Ciclev10019379m.g Citrus clementina HOM05D000094 ORTHO05D002063 1.0e-11 74.3 66 57.6
Lalb_Chr12g0196681 Lupinus albus HOM05D000094 ORTHO05D002063 1.0e-11 74.3 66 57.6
Ah.11g048770 Amaranthus hybridus HOM05D000094 ORTHO05D002063 1.3e-11 73.9 66 57.6
Thecc.03G078300 Theobroma cacao HOM05D000094 ORTHO05D002063 1.3e-11 73.9 66 56.1
FAN13G1840 Fragaria x ananassa HOM05D000094 ORTHO05D002063 2.2e-11 73.2 66 56.1
Medtr4g107620 Medicago truncatula HOM05D000094 ORTHO05D002063 2.2e-11 73.2 66 56.1
Peaxi162Scf00009g00433 Petunia axillaris HOM05D000094 ORTHO05D002063 2.2e-11 73.2 66 59.1
Potri.012G071100 Populus trichocarpa HOM05D000094 ORTHO05D002063 2.2e-11 73.2 66 56.1
arahy.Tifrunner.gnm1.ann1.3I7H6G Arachis hypogaea HOM05D000094 ORTHO05D002063 2.9e-11 72.8 66 57.6
arahy.Tifrunner.gnm1.ann1.IPX7IG Arachis hypogaea HOM05D000094 ORTHO05D002063 2.9e-11 72.8 66 57.6
Glyma.17G096500 Glycine max HOM05D000094 ORTHO05D002063 2.9e-11 72.8 66 57.6
Nitab4.5_0004048g0030 Nicotiana tabacum HOM05D000094 ORTHO05D002063 2.9e-11 72.8 66 57.6
Prupe.5G185500 Prunus persica HOM05D000094 ORTHO05D002063 2.9e-11 72.8 66 57.6
Cc04_g15670 Coffea canephora HOM05D000094 ORTHO05D002063 3.8e-11 72.4 66 59.1
Psat4g051680 Pisum sativum HOM05D000094 ORTHO05D002063 3.8e-11 72.4 68 57.4
TPR.G38402 Trifolium pratense HOM05D000094 ORTHO05D002063 3.8e-11 72.4 66 56.1
Hma1.2p1_0002F.1_g003290 Hydrangea macrophylla HOM05D000094 ORTHO05D002063 5.0e-11 72.0 66 54.5
Eucgr.B00412 Eucalyptus grandis HOM05D000094 ORTHO05D002063 6.5e-11 71.6 68 57.4
FAN08G0384 Fragaria x ananassa HOM05D000094 ORTHO05D002063 6.5e-11 71.6 66 56.1
Nitab4.5_0000642g0050 Nicotiana tabacum HOM05D000094 ORTHO05D002063 6.5e-11 71.6 114 39.5
QL10p015145 Quercus lobata HOM05D000094 ORTHO05D002063 6.5e-11 71.6 66 57.6
PGSC0003DMG400025330 Solanum tuberosum HOM05D000094 ORTHO05D002063 6.5e-11 71.6 66 54.5
Ca_21852_v3 Cicer arietinum L. HOM05D000094 ORTHO05D002063 8.4e-11 71.2 66 54.5
Lalb_Chr13g0303441 Lupinus albus HOM05D000094 ORTHO05D002063 8.4e-11 71.2 66 56.1
RcHm_v2.0_Chr7g0180531 Rosa chinensis HOM05D000094 ORTHO05D002063 8.4e-11 71.2 66 56.1
DCAR_016532 Daucus carota HOM05D000094 ORTHO05D002063 1.1e-10 70.9 66 54.5
Glyma.05G030100 Glycine max HOM05D000094 ORTHO05D002063 1.1e-10 70.9 66 54.5
Lj4g0012183 Lotus japonicus HOM05D000094 ORTHO05D002063 1.1e-10 70.9 66 56.1
Solyc03g113450.4 Solanum lycopersicum HOM05D000094 ORTHO05D002063 1.1e-10 70.9 66 54.5
Sopen03g032500 Solanum pennellii HOM05D000094 ORTHO05D002063 1.1e-10 70.9 66 54.5
TAR622G1061 Trochodendron aralioides HOM05D000094 ORTHO05D002063 1.1e-10 70.9 70 51.4
Atru.chr9.2329 Acer truncatum HOM05D000094 ORTHO05D002063 1.4e-10 70.5 66 54.5
EL10Ac5g10939 Beta vulgaris HOM05D000094 ORTHO05D002063 1.4e-10 70.5 66 54.5
CSS0042073 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D002063 1.4e-10 70.5 66 54.5
AUR62008351 Chenopodium quinoa HOM05D000094 ORTHO05D002063 1.4e-10 70.5 66 53.0
AUR62021746 Chenopodium quinoa HOM05D000094 ORTHO05D002063 1.4e-10 70.5 66 53.0
Duzib205G1105 Durio zibethinus HOM05D000094 ORTHO05D002063 1.4e-10 70.5 66 53.0
FvH4_5g15570 Fragaria vesca HOM05D000094 ORTHO05D002063 1.4e-10 70.5 66 54.5
FAN18G2913 Fragaria x ananassa HOM05D000094 ORTHO05D002063 1.4e-10 70.5 66 54.5
Gohir.D11G032400 Gossypium hirsutum HOM05D000094 ORTHO05D002063 1.4e-10 70.5 66 54.5
Gorai.007G035200 Gossypium raimondii HOM05D000094 ORTHO05D002063 1.4e-10 70.5 66 54.5
PGR083G0396 Punica granatum HOM05D000094 ORTHO05D002063 1.4e-10 70.5 68 55.9
PGR083G1599 Punica granatum HOM05D000094 ORTHO05D002063 1.4e-10 70.5 68 55.9
Cpa.g.sc688.1 Carica papaya HOM05D000094 ORTHO05D002063 1.9e-10 70.1 66 53.0
Glyma.04G174700 Glycine max HOM05D000094 ORTHO05D002063 1.9e-10 70.1 66 54.5
Oeu048730.1 Olea europaea HOM05D000094 ORTHO05D002063 1.9e-10 70.1 66 53.0
TWI81G0342 Tripterygium wilfordii HOM05D000094 ORTHO05D002063 1.9e-10 70.1 66 51.5
COL.COLO4_09206 Corchorus olitorius HOM05D000094 ORTHO05D002063 2.5e-10 69.7 66 53.0
Glyma.06G190000 Glycine max HOM05D000094 ORTHO05D002063 2.5e-10 69.7 66 53.0
PSO478G3052 Papaver somniferum HOM05D000094 ORTHO05D002063 2.5e-10 69.7 65 60.0
TWI60G0650 Tripterygium wilfordii HOM05D000094 ORTHO05D002063 2.5e-10 69.7 66 51.5
FAN04G2203 Fragaria x ananassa HOM05D000094 ORTHO05D002063 3.2e-10 69.3 66 54.5
Lj5A116T63 Lonicera japonica HOM05D000094 ORTHO05D002063 3.2e-10 69.3 66 51.5
Gohir.A11G029081 Gossypium hirsutum HOM05D000094 ORTHO05D002063 4.2e-10 68.9 68 55.9
CAN.G999.23 Capsicum annuum HOM05D000094 ORTHO05D002063 5.5e-10 68.6 66 56.1
DCAR_026079 Daucus carota HOM05D000094 ORTHO05D002063 5.5e-10 68.6 66 53.0
Manes.14G074200 Manihot esculenta HOM05D000094 ORTHO05D002063 5.5e-10 68.6 66 51.5
MD14G1193700 Malus domestica HOM05D000094 ORTHO05D002063 7.1e-10 68.2 66 53.0
Phvul.003G193100 Phaseolus vulgaris HOM05D000094 ORTHO05D002063 7.1e-10 68.2 66 53.0
VMungo1309G2041 Vigna mungo HOM05D000094 ORTHO05D002063 7.1e-10 68.2 67 52.2
Actinidia37660 Actinidia chinensis HOM05D000094 ORTHO05D002063 1.2e-09 67.4 66 54.5
PSO017G5106 Papaver somniferum HOM05D000094 ORTHO05D002063 1.2e-09 67.4 65 56.9
Gohir.D07G070100 Gossypium hirsutum HOM05D000094 ORTHO05D002063 1.6e-09 67.0 67 53.7
Gorai.001G074000 Gossypium raimondii HOM05D000094 ORTHO05D002063 1.6e-09 67.0 67 53.7
HanXRQChr16g0503261 Helianthus annuus HOM05D000094 ORTHO05D002063 1.6e-09 67.0 66 53.0
MD06G1187300 Malus domestica HOM05D000094 ORTHO05D002063 1.6e-09 67.0 66 51.5
vmacro19429 Vaccinium macrocarpon HOM05D000094 ORTHO05D002063 2.1e-09 66.6 66 53.0
HanXRQChr09g0271151 Helianthus annuus HOM05D000094 ORTHO05D002063 2.7e-09 66.2 66 53.0
THA.LOC104821455 Tarenaya hassleriana HOM05D000094 ORTHO05D002063 2.7e-09 66.2 66 50.0
Aqoxy1G03042 Aquilegia oxysepala HOM05D000094 ORTHO05D002063 3.5e-09 65.9 65 58.5
Aqoxy3G03255 Aquilegia oxysepala HOM05D000094 ORTHO05D002063 3.5e-09 65.9 65 58.5
Aqoxy4G01842 Aquilegia oxysepala HOM05D000094 ORTHO05D002063 3.5e-09 65.9 65 58.5
Migut.I00125 Erythranthe guttata HOM05D000094 ORTHO05D002063 3.5e-09 65.9 67 50.7
Rhsim08G0160400 Rhododendron simsii HOM05D000168 ORTHO05D002063 4.6e-09 65.5 66 51.5
MELO3C002211.2 Cucumis melo HOM05D000094 ORTHO05D002063 6.1e-09 65.1 66 48.5
MSTRG.23050 Avicennia marina HOM05D000094 ORTHO05D002063 7.9e-09 64.7 65 52.3
MBI01_g12857_MAGBIO Magnolia biondii HOM05D000094 ORTHO05D002063 7.9e-09 64.7 65 53.8
Sc04g0002370 Simmondsia chinensis HOM05D000094 ORTHO05D002063 1.3e-08 63.9 66 48.5
Sc04g0002390 Simmondsia chinensis HOM05D000094 ORTHO05D002063 1.3e-08 63.9 66 48.5
Cfa018997 Carpinus fangiana HOM05D000094 ORTHO05D002063 1.8e-08 63.5 66 48.5
ClCG01G014360 Citrullus lanatus HOM05D000094 ORTHO05D002063 1.8e-08 63.5 66 48.5
Oeu024866.1 Olea europaea HOM05D000094 ORTHO05D002063 1.8e-08 63.5 66 48.5
ATR0665G290 Amborella trichopoda HOM05D000094 ORTHO05D002063 2.3e-08 63.2 66 51.5
Phvul.009G190400 Phaseolus vulgaris HOM05D000094 ORTHO05D002063 3.0e-08 62.8 66 48.5
CiPaw.11G037300 Carya illinoinensis HOM05D000094 ORTHO05D002063 3.9e-08 62.4 66 45.5
Hund09370 Selenicereus undatus HOM05D000094 ORTHO05D002063 6.7e-08 61.6 68 50.0
SGA_v2.0_scaffold56G20057 Striga asiatica HOM05D000094 ORTHO05D002063 1.5e-07 60.5 66 48.5
Lj1g0018804 Lotus japonicus HOM05D000094 ORTHO05D002063 2.5e-07 59.7 65 49.2
Zm00001eb033050 Zea mays HOM05D000094 ORTHO05D002063 2.5e-07 59.7 65 49.2
Lsat_1_v5_gn_4_107361 Lactuca sativa HOM05D000094 ORTHO05D002063 3.3e-07 59.3 66 47.0
SalBow1G6213 Salvia bowleyana HOM05D000094 ORTHO05D002063 4.3e-07 58.9 66 50.0
SalBow5G5512 Salvia bowleyana HOM05D000094 ORTHO05D002063 4.3e-07 58.9 66 50.0
AL8G39680 Arabidopsis lyrata HOM05D000094 ORTHO05D002063 5.7e-07 58.5 61 49.2
Sed0004741 Sechium edule HOM05D000094 ORTHO05D002063 5.7e-07 58.5 66 45.5
BcaC04g23396 Brassica carinata HOM05D000094 ORTHO05D002063 7.4e-07 58.2 61 49.2
C09p08800 Brassica napus HOM05D000094 ORTHO05D002063 7.4e-07 58.2 61 49.2
BolC9t53793H Brassica oleracea HOM05D000094 ORTHO05D002063 7.4e-07 58.2 61 49.2
Os12g0638100 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D002063 9.7e-07 57.8 65 47.7
Aa31LG11G970 Aethionema arabicum HOM05D000094 ORTHO05D002063 1.3e-06 57.4 61 49.2
Carub.0008s2344 Capsella rubella HOM05D000094 ORTHO05D002063 1.3e-06 57.4 61 47.5
Duzib068G0258 Durio zibethinus HOM05D000094 ORTHO05D002063 1.3e-06 57.4 68 44.1
arahy.Tifrunner.gnm1.ann1.3JW03P Arachis hypogaea HOM05D000094 ORTHO05D002063 2.2e-06 56.6 62 46.8
CARHR276500 Cardamine hirsuta HOM05D000094 ORTHO05D002063 2.2e-06 56.6 61 47.5
Thhalv10003855m.g Eutrema salsugineum HOM05D000094 ORTHO05D002063 2.2e-06 56.6 61 47.5
arahy.Tifrunner.gnm1.ann1.6754IK Arachis hypogaea HOM05D000094 ORTHO05D002063 2.8e-06 56.2 62 46.8
ECA232G0931 Erigeron canadensis HOM05D000094 ORTHO05D002063 2.8e-06 56.2 66 43.9
Sed0012864 Sechium edule HOM05D000094 ORTHO05D002063 2.8e-06 56.2 66 45.5
CAN.G999.21 Capsicum annuum HOM05D000094 ORTHO05D002063 4.8e-06 55.5 62 53.2
BcaB02g09675 Brassica carinata HOM05D000094 ORTHO05D002063 6.3e-06 55.1 61 47.5
BcaC01g02510 Brassica carinata HOM05D000094 ORTHO05D002063 6.3e-06 55.1 61 47.5
A09p07820 Brassica napus HOM05D000094 ORTHO05D002063 6.3e-06 55.1 61 47.5
C03p64020 Brassica napus HOM05D000282 ORTHO05D002063 6.3e-06 55.1 61 47.5
BolC3t18657H Brassica oleracea HOM05D000094 ORTHO05D002063 6.3e-06 55.1 61 47.5
BraA09t36433Z Brassica rapa HOM05D000094 ORTHO05D002063 6.3e-06 55.1 61 47.5


User provided reference genes

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