Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24771 Nelumbo nucifera HOM05D006361 ORTHO05D007824 2.3e-185 652.1 342 100.0
TAR371G0655 Trochodendron aralioides HOM05D006361 ORTHO05D007824 3.8e-119 432.2 343 68.2
CSS0002219 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 3.1e-105 386.0 332 63.6
CSS0021447 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 5.3e-105 385.2 332 63.3
GSVIVG01000604001 Vitis vinifera HOM05D006361 ORTHO05D007824 1.0e-103 380.9 335 62.4
Aqoxy3G04165 Aquilegia oxysepala HOM05D006361 ORTHO05D007824 2.3e-100 369.8 323 61.9
Rhsim04G0169300 Rhododendron simsii HOM05D006361 ORTHO05D007824 2.3e-100 369.8 321 63.6
CiPaw.05G161000 Carya illinoinensis HOM05D006361 ORTHO05D007824 5.7e-99 365.2 335 62.1
Potri.010G099500 Populus trichocarpa HOM05D006361 ORTHO05D007824 5.7e-99 365.2 326 61.3
TWI74G1113 Tripterygium wilfordii HOM05D006361 ORTHO05D007824 2.2e-98 363.2 337 61.1
Cfa015091 Carpinus fangiana HOM05D006361 ORTHO05D007824 3.1e-97 359.4 358 57.0
Hma1.2p1_0068F.1_g037170 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 5.9e-96 355.1 326 60.4
Cpa.g.sc2.83 Carica papaya HOM05D006361 ORTHO05D007824 1.3e-95 354.0 347 57.6
Duzib251G0777 Durio zibethinus HOM05D006361 ORTHO05D007824 1.3e-95 354.0 322 59.3
Lj6A727G89 Lonicera japonica HOM05D006361 ORTHO05D007824 1.3e-95 354.0 332 61.7
Gohir.D02G138700 Gossypium hirsutum HOM05D006361 ORTHO05D007824 1.7e-95 353.6 329 59.9
Gohir.A03G114200 Gossypium hirsutum HOM05D006361 ORTHO05D007824 2.2e-95 353.2 329 59.6
Gorai.005G155100 Gossypium raimondii HOM05D006361 ORTHO05D007824 5.0e-95 352.1 329 59.6
Thecc.02G299900 Theobroma cacao HOM05D006361 ORTHO05D007824 1.9e-94 350.1 345 57.1
PSO063G1793 Papaver somniferum HOM05D006361 ORTHO05D007824 2.5e-94 349.7 324 60.2
QL03p040836 Quercus lobata HOM05D006361 ORTHO05D007824 7.2e-94 348.2 338 58.9
Sabra10G0072200 Salix brachista HOM05D006361 ORTHO05D007824 1.2e-93 347.4 350 57.1
arahy.Tifrunner.gnm1.ann1.DP1KMD Arachis hypogaea HOM05D006361 ORTHO05D007824 2.7e-93 346.3 327 59.9
arahy.Tifrunner.gnm1.ann1.L5ZJMR Arachis hypogaea HOM05D006361 ORTHO05D007824 7.9e-93 344.7 327 59.6
Sed0017139 Sechium edule HOM05D006361 ORTHO05D007824 1.4e-92 344.0 334 61.7
Sopen01g014340 Solanum pennellii HOM05D006361 ORTHO05D007824 1.8e-92 343.6 341 57.2
Peaxi162Scf00705g00017 Petunia axillaris HOM05D006361 ORTHO05D007824 8.8e-92 341.3 333 57.1
Sopen01g010510 Solanum pennellii HOM05D006361 ORTHO05D007824 8.8e-92 341.3 341 56.3
Eucgr.G02045 Eucalyptus grandis HOM05D006361 ORTHO05D007824 1.5e-91 340.5 341 56.0
Manes.15G141000 Manihot esculenta HOM05D006361 ORTHO05D007824 1.5e-91 340.5 323 58.8
PGSC0003DMG400030230 Solanum tuberosum HOM05D006361 ORTHO05D007824 1.5e-91 340.5 341 56.3
PGR142G2205 Punica granatum HOM05D006361 ORTHO05D007824 4.3e-91 339.0 344 57.0
Nitab4.5_0003889g0010 Nicotiana tabacum HOM05D006361 ORTHO05D007824 2.2e-90 336.7 345 55.1
arahy.Tifrunner.gnm1.ann1.D0LIF0 Arachis hypogaea HOM05D006361 ORTHO05D007824 3.7e-90 335.9 327 59.0
ClCG11G000690 Citrullus lanatus HOM05D006361 ORTHO05D007824 4.8e-90 335.5 322 61.2
Cc11_g04970 Coffea canephora HOM05D006361 ORTHO05D007824 1.4e-89 334.0 325 58.5
Ciclev10005401m.g Citrus clementina HOM05D006361 ORTHO05D007824 1.8e-89 333.6 331 56.5
CAN.G282.86 Capsicum annuum HOM05D006361 ORTHO05D007824 2.4e-89 333.2 329 55.9
Glyma.20G108700 Glycine max HOM05D006361 ORTHO05D007824 9.1e-89 331.3 323 57.3
CARHR009260 Cardamine hirsuta HOM05D006361 ORTHO05D007824 4.5e-88 328.9 322 54.7
Lalb_Chr02g0143351 Lupinus albus HOM05D006361 ORTHO05D007824 4.5e-88 328.9 326 55.8
Oeu005683.1 Olea europaea HOM05D006361 ORTHO05D007824 4.5e-88 328.9 324 56.2
Dinv06050 Davidia involucrata HOM05D006361 ORTHO05D007824 5.9e-88 328.6 331 58.0
VMungo0720G0403 Vigna mungo HOM05D006361 ORTHO05D007824 1.9e-86 323.6 323 57.0
Prupe.1G340600 Prunus persica HOM05D006361 ORTHO05D007824 5.5e-86 322.0 328 57.0
THA.LOC104815221 Tarenaya hassleriana HOM05D006361 ORTHO05D007824 7.2e-86 321.6 331 52.0
DCAR_030322 Daucus carota HOM05D006361 ORTHO05D007824 1.2e-85 320.9 341 54.0
Lj5g0003295 Lotus japonicus HOM05D006361 ORTHO05D007824 1.6e-85 320.5 324 58.6
Nitab4.5_0000944g0110 Nicotiana tabacum HOM05D006361 ORTHO05D007824 1.6e-85 320.5 332 55.4
Thhalv10008047m.g Eutrema salsugineum HOM05D006361 ORTHO05D007824 7.9e-85 318.2 340 52.6
FAN17G1000 Fragaria x ananassa HOM05D006361 ORTHO05D007824 7.9e-85 318.2 326 57.1
BcaB03g13282 Brassica carinata HOM05D006361 ORTHO05D007824 1.8e-84 317.0 326 52.5
Carub.0001s0863 Capsella rubella HOM05D006361 ORTHO05D007824 1.8e-84 317.0 333 51.1
FvH4_4g35990 Fragaria vesca HOM05D006361 ORTHO05D007824 3.0e-84 316.2 324 57.4
FAN12G2025 Fragaria x ananassa HOM05D006361 ORTHO05D007824 8.8e-84 314.7 324 57.1
FAN22G0651 Fragaria x ananassa HOM05D006361 ORTHO05D007824 2.6e-83 313.2 321 57.0
Sp1g07900 Schrenkiella parvula HOM05D006361 ORTHO05D007824 2.6e-83 313.2 344 52.3
HanXRQChr08g0224371 Helianthus annuus HOM05D006361 ORTHO05D007824 3.3e-83 312.8 326 53.7
AL1G19780 Arabidopsis lyrata HOM05D006361 ORTHO05D007824 4.4e-83 312.4 338 52.1
BraA08t35382Z Brassica rapa HOM05D006361 ORTHO05D007824 4.4e-83 312.4 326 53.1
AT1G09290 Arabidopsis thaliana HOM05D006361 ORTHO05D007824 5.7e-83 312.0 329 52.9
AUR62003478 Chenopodium quinoa HOM05D006361 ORTHO05D007824 5.7e-83 312.0 321 55.8
FAN07G0576 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.3e-82 310.8 321 57.9
Aa31LG1G5840 Aethionema arabicum HOM05D006361 ORTHO05D007824 1.7e-82 310.5 326 51.8
MD16G1010000 Malus domestica HOM05D006361 ORTHO05D007824 1.7e-82 310.5 333 55.0
Atru.chr11.1031 Acer truncatum HOM05D006361 ORTHO05D007824 3.7e-82 309.3 340 54.1
BcaC07g38489 Brassica carinata HOM05D006361 ORTHO05D007824 3.7e-82 309.3 327 53.2
C08p12590 Brassica napus HOM05D006361 ORTHO05D007824 3.7e-82 309.3 327 53.2
RcHm_v2.0_Chr4g0445621 Rosa chinensis HOM05D006361 ORTHO05D007824 6.3e-82 308.5 325 55.7
QL03p040440 Quercus lobata HOM05D006361 ORTHO05D007824 1.4e-81 307.4 440 45.0
A08p34700 Brassica napus HOM05D006361 ORTHO05D007824 1.8e-81 307.0 327 53.2
Os02g0672400 Oryza sativa ssp. japonica HOM05D006361 ORTHO05D007824 5.3e-81 305.4 322 53.7
PSO782G3204 Papaver somniferum HOM05D006361 ORTHO05D007824 6.9e-81 305.1 342 52.0
MELO3C022554.2 Cucumis melo HOM05D006361 ORTHO05D007824 2.0e-80 303.5 330 55.8
BolC8t48897H Brassica oleracea HOM05D006361 ORTHO05D007824 1.0e-79 301.2 336 50.3
Lsat_1_v5_gn_8_33920 Lactuca sativa HOM05D006361 ORTHO05D007824 1.3e-79 300.8 322 54.3
HPP92_007296 Vanilla planifolia HOM05D006361 ORTHO05D007824 1.3e-79 300.8 335 51.9
CDE04G0863 Ceratophyllum demersum HOM05D006361 ORTHO05D007824 1.7e-79 300.4 335 50.7
ECA233G5480 Erigeron canadensis HOM05D006361 ORTHO05D007824 1.7e-79 300.4 323 52.9
Medtr1g112360 Medicago truncatula HOM05D006361 ORTHO05D007824 2.5e-78 296.6 323 53.6
ATR0807G049 Amborella trichopoda HOM05D006361 ORTHO05D007824 4.2e-78 295.8 332 52.1
EL10Ac6g15395 Beta vulgaris HOM05D006361 ORTHO05D007824 7.2e-78 295.0 326 54.3
Psat6g231640 Pisum sativum HOM05D006361 ORTHO05D007824 1.2e-77 294.3 323 53.3
TPR.G2489 Trifolium pratense HOM05D006361 ORTHO05D007824 2.1e-77 293.5 323 53.9
arahy.Tifrunner.gnm1.ann1.3EIQ25 Arachis hypogaea HOM05D006361 ORTHO05D007824 1.4e-76 290.8 363 50.4
Ah.03g147180 Amaranthus hybridus HOM05D006361 ORTHO05D007824 4.5e-72 275.8 326 50.3
AUR62017787 Chenopodium quinoa HOM05D006361 ORTHO05D007824 6.5e-71 271.9 338 50.3
Hma1.2p1_0068F.1_g037190 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 1.9e-70 270.4 268 57.5
COL.COLO4_27543 Corchorus olitorius HOM05D006361 ORTHO05D007824 2.3e-68 263.5 275 56.4
SEGI_09761 Sequoiadendron giganteum HOM05D006361 ORTHO05D007824 4.0e-68 262.7 374 43.9
Ca_11202_v3 Cicer arietinum L. HOM05D006361 ORTHO05D007824 2.8e-66 256.5 318 47.5
Phvul.007G020000 Phaseolus vulgaris HOM05D006361 ORTHO05D007824 1.3e-63 247.7 281 50.2
CsaV3_5G012340 Cucumis sativus L. HOM05D006361 ORTHO05D007824 1.8e-60 237.3 262 55.7
vmacro08586 Vaccinium macrocarpon HOM05D006361 ORTHO05D007824 5.7e-59 232.3 423 38.5
Haze_10736 Corylus avellana HOM05D006361 ORTHO05D007824 2.9e-47 193.4 179 58.7
Sc11g0003580 Simmondsia chinensis HOM05D006361 ORTHO05D007824 8.6e-47 191.8 244 49.2
AagrBONN_evm.TU.Sc2ySwM_228.545 Anthoceros agrestis HOM05D006361 ORTHO05D007824 5.2e-44 182.6 353 38.2
Mapoly0161s0009 Marchantia polymorpha HOM05D006361 ORTHO05D007824 1.3e-42 177.9 369 33.3
Hund12782 Selenicereus undatus HOM05D006361 ORTHO05D007824 2.7e-40 170.2 135 66.7
Haze_10738 Corylus avellana HOM05D006361 ORTHO05D007824 8.0e-37 158.7 212 48.6
arahy.Tifrunner.gnm1.ann1.10LCJA Arachis hypogaea HOM05D006361 ORTHO05D007824 5.2e-36 156.0 288 40.6
Actinidia34045 Actinidia chinensis HOM05D006361 ORTHO05D007824 3.3e-30 136.7 125 60.0
MBI06_g04759_MAGBIO Magnolia biondii HOM05D006361 ORTHO05D007824 3.6e-29 133.3 92 76.1
Actinidia34046 Actinidia chinensis HOM05D006361 ORTHO05D007824 6.6e-23 112.5 71 76.1
Glyma.10G280900 Glycine max HOM05D006361 ORTHO05D007824 1.2e-21 108.2 219 36.5
CBR_g51236 Chara braunii HOM05D006361 ORTHO05D007824 2.8e-21 107.1 463 25.5
Zm00001eb250300 Zea mays HOM05D006361 ORTHO05D007824 3.1e-20 103.6 132 47.7
VMungo0251G1708 Vigna mungo HOM05D006361 ORTHO05D007824 2.0e-19 100.9 114 53.5
Cc00_g30730 Coffea canephora HOM05D006361 ORTHO05D007824 6.4e-18 95.9 64 71.9
Oeu038968.1 Olea europaea HOM05D006361 ORTHO05D007824 8.4e-18 95.5 172 39.0
Pp3c10_230 Physcomitrium patens HOM05D006361 ORTHO05D007824 4.2e-17 93.2 261 29.9
Sabra19G0029800 Salix brachista HOM05D006361 ORTHO05D007824 2.1e-16 90.9 55 76.4
Cc00_g15950 Coffea canephora HOM05D006361 ORTHO05D007824 1.8e-12 77.8 41 80.5
Cc00_g35660 Coffea canephora HOM05D006361 ORTHO05D007824 6.9e-12 75.9 42 78.6
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 1.2e-11 75.1 39 82.1
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 4.4e-11 73.2 41 75.6
Hma1.2p1_0068F.1_g037180 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 2.2e-10 70.9 45 66.7
SMO115G0015 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 3.2e-09 67.0 183 29.0
SMO166G0069 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 5.4e-09 66.2 182 29.1
QL03p040408 Quercus lobata HOM05D006361 ORTHO05D007824 4.3e-06 56.6 43 62.8


User provided reference genes

Program Settings