Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24662 Nelumbo nucifera HOM05D000278 ORTHO05D020839 4.1e-34 147.5 75 100.0
Eucgr.I00662 Eucalyptus grandis HOM05D000278 ORTHO05D005056 1.0e-08 63.2 31 100.0
Nn4g24660 Nelumbo nucifera HOM05D000278 ORTHO05D005056 1.0e-08 63.2 31 100.0
Aqoxy5G03860 Aquilegia oxysepala HOM05D000278 ORTHO05D005056 1.7e-08 62.4 31 96.8
Manes.05G050400 Manihot esculenta HOM05D000278 ORTHO05D005056 1.7e-08 62.4 31 96.8
TAR374G0041 Trochodendron aralioides HOM05D000278 ORTHO05D005056 1.7e-08 62.4 31 96.8
unitig_61.g26416 Utricularia gibba HOM05D000278 ORTHO05D005056 1.7e-08 62.4 34 88.2
MBI12_g29752_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D005056 2.2e-08 62.0 31 93.5
Potri.002G142700 Populus trichocarpa HOM05D000278 ORTHO05D005056 2.2e-08 62.0 31 93.5
Solyc01g090750.3 Solanum lycopersicum HOM05D000278 ORTHO05D005056 2.2e-08 62.0 31 93.5
Sopen01g036480 Solanum pennellii HOM05D000278 ORTHO05D005056 2.2e-08 62.0 31 93.5
PGSC0003DMG400026026 Solanum tuberosum HOM05D000278 ORTHO05D005056 2.2e-08 62.0 31 93.5
vmacro13458 Vaccinium macrocarpon HOM05D000278 ORTHO05D005056 2.9e-08 61.6 31 96.8
Ciclev10019588m.g Citrus clementina HOM05D000278 ORTHO05D005056 3.8e-08 61.2 31 93.5
Nn3g18503 Nelumbo nucifera HOM05D000278 ORTHO05D005056 5.0e-08 60.8 31 96.8
Nitab4.5_0000706g0130 Nicotiana tabacum HOM05D000278 ORTHO05D005056 5.0e-08 60.8 31 90.3
Nitab4.5_0006820g0010 Nicotiana tabacum HOM05D000278 ORTHO05D005056 5.0e-08 60.8 31 90.3
Peaxi162Scf00377g00416 Petunia axillaris HOM05D000278 ORTHO05D005056 5.0e-08 60.8 31 90.3
Dinv28581 Davidia involucrata HOM05D000278 ORTHO05D005056 6.5e-08 60.5 31 93.5
ECA234G2055 Erigeron canadensis HOM05D000278 ORTHO05D005056 6.5e-08 60.5 31 93.5
Lsat_1_v5_gn_4_22680 Lactuca sativa HOM05D000278 ORTHO05D005056 6.5e-08 60.5 31 93.5
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 6.5e-08 60.5 31 93.5
Oeu000041.1 Olea europaea HOM05D000278 ORTHO05D005056 6.5e-08 60.5 31 90.3
Rhsim01G0136000 Rhododendron simsii HOM05D000278 ORTHO05D005056 6.5e-08 60.5 31 93.5
GSVIVG01018213001 Vitis vinifera HOM05D000278 ORTHO05D005056 6.5e-08 60.5 31 93.5
MSTRG.28169 Avicennia marina HOM05D000278 ORTHO05D005056 8.5e-08 60.1 31 93.5
COL.COLO4_31194 Corchorus olitorius HOM05D000278 ORTHO05D005056 8.5e-08 60.1 31 90.3
Duzib128G0144 Durio zibethinus HOM05D000278 ORTHO05D005056 8.5e-08 60.1 31 90.3
Duzib212G0780 Durio zibethinus HOM05D000278 ORTHO05D005056 8.5e-08 60.1 31 90.3
QL04p035809 Quercus lobata HOM05D000278 ORTHO05D005056 8.5e-08 60.1 31 90.3
Thecc.01G386100 Theobroma cacao HOM05D000278 ORTHO05D005056 8.5e-08 60.1 31 90.3
Atru.chr5.215 Acer truncatum HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
Actinidia12666 Actinidia chinensis HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
Actinidia33488 Actinidia chinensis HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
Ah.03g136640 Amaranthus hybridus HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
CSS0025739 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
CSS0041160 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
CANSAT11G0994 Cannabis sativa HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
Cfa013785 Carpinus fangiana HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
Haze_22445 Corylus avellana HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
Migut.B01576 Erythranthe guttata HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
Oeu064569.1 Olea europaea HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
Potri.014G058500 Populus trichocarpa HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
QL07p017267 Quercus lobata HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
Sabra14G0042700 Salix brachista HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
TWI59G0197 Tripterygium wilfordii HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
vmacro21041 Vaccinium macrocarpon HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
HPP92_003530 Vanilla planifolia HOM05D000278 ORTHO05D005056 1.1e-07 59.7 31 90.3
Cpa.g.sc477.1 Carica papaya HOM05D000278 ORTHO05D005056 1.5e-07 59.3 31 90.3
ClCG10G012080 Citrullus lanatus HOM05D000278 ORTHO05D005056 1.5e-07 59.3 31 90.3
PSO170G4166 Papaver somniferum HOM05D000278 ORTHO05D005056 1.5e-07 59.3 31 90.3
PSO700G0048 Papaver somniferum HOM05D000278 ORTHO05D005056 1.5e-07 59.3 31 90.3
SGA_v2.0_scaffold153G36956 Striga asiatica HOM05D000278 ORTHO05D005056 1.5e-07 59.3 30 93.3
Atru.chr11.1568 Acer truncatum HOM05D000278 ORTHO05D005056 1.9e-07 58.9 31 87.1
CAN.G899.15 Capsicum annuum HOM05D000278 ORTHO05D005056 1.9e-07 58.9 31 87.1
ClCG11G009900 Citrullus lanatus HOM05D000278 ORTHO05D005056 1.9e-07 58.9 31 90.3
DCAR_015863 Daucus carota HOM05D000278 ORTHO05D005056 1.9e-07 58.9 31 90.3
Ca_17857_v3 Cicer arietinum L. HOM05D000278 ORTHO05D005056 2.5e-07 58.5 31 90.3
Glyma.05G165500 Glycine max HOM05D000278 ORTHO05D005056 2.5e-07 58.5 31 90.3
Glyma.08G123100 Glycine max HOM05D000278 ORTHO05D005056 2.5e-07 58.5 31 90.3
HanXRQChr09g0251951 Helianthus annuus HOM05D000278 ORTHO05D005056 2.5e-07 58.5 31 90.3
HanXRQChr12g0383091 Helianthus annuus HOM05D000278 ORTHO05D005056 2.5e-07 58.5 31 90.3
Hma1.2p1_0432F.1_g151820 Hydrangea macrophylla HOM05D000278 ORTHO05D005056 2.5e-07 58.5 31 87.1
Lj4g0002579 Lotus japonicus HOM05D000278 ORTHO05D005056 2.5e-07 58.5 31 90.3
Psat7g065040 Pisum sativum HOM05D000278 ORTHO05D005056 2.5e-07 58.5 31 90.3
VMungo0251G0924 Vigna mungo HOM05D000278 ORTHO05D005056 2.5e-07 58.5 31 90.3
Aa31LG8G6840 Aethionema arabicum HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
Ah.02g128680 Amaranthus hybridus HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 87.1
AL3G33730 Arabidopsis lyrata HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
AT3G20050 Arabidopsis thaliana HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
MSTRG.17153 Avicennia marina HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
BcaB04g20669 Brassica carinata HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
BcaB06g26075 Brassica carinata HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
BcaC05g28366 Brassica carinata HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
BcaC05g28368 Brassica carinata HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
BcaC09g48960 Brassica carinata HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
A01p34600 Brassica napus HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
A05p29050 Brassica napus HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
C01p44050 Brassica napus HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
C05p44480 Brassica napus HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
BolC1t04366H Brassica oleracea HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
BolC5t33171H Brassica oleracea HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
BraA01t03554Z Brassica rapa HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
BraA05t21789Z Brassica rapa HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
Carub.0003s1997 Capsella rubella HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
CARHR095580 Cardamine hirsuta HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
AUR62017449 Chenopodium quinoa HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 87.1
AUR62032517 Chenopodium quinoa HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 87.1
Haze_02727 Corylus avellana HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
Sp3g18080 Schrenkiella parvula HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
THA.LOC104802476 Tarenaya hassleriana HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
THA.LOC104817211 Tarenaya hassleriana HOM05D000278 ORTHO05D005056 3.2e-07 58.2 31 90.3
CiPaw.13G031000 Carya illinoinensis HOM05D000278 ORTHO05D005056 4.2e-07 57.8 31 87.1
MELO3C008567.2 Cucumis melo HOM05D000278 ORTHO05D005056 4.2e-07 57.8 31 87.1
CsaV3_2G010520 Cucumis sativus L. HOM05D000278 ORTHO05D005056 4.2e-07 57.8 31 87.1
Os04g0551800 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D005056 4.2e-07 57.8 31 90.3
Sed0018244 Sechium edule HOM05D000278 ORTHO05D005056 4.2e-07 57.8 31 87.1
arahy.Tifrunner.gnm1.ann1.0EJ6SU Arachis hypogaea HOM05D000278 ORTHO05D005056 5.5e-07 57.4 31 87.1
arahy.Tifrunner.gnm1.ann1.W5WKZB Arachis hypogaea HOM05D000278 ORTHO05D005056 5.5e-07 57.4 31 87.1
EL10Ac6g13920 Beta vulgaris HOM05D000278 ORTHO05D005056 5.5e-07 57.4 31 87.1
CDE04G3339 Ceratophyllum demersum HOM05D000278 ORTHO05D005056 5.5e-07 57.4 31 87.1
CDE12G0415 Ceratophyllum demersum HOM05D000278 ORTHO05D005056 5.5e-07 57.4 31 87.1
Dinv06562 Davidia involucrata HOM05D000278 ORTHO05D005056 5.5e-07 57.4 31 87.1
MD04G1052300 Malus domestica HOM05D000278 ORTHO05D005056 5.5e-07 57.4 31 87.1
MD06G1047900 Malus domestica HOM05D000278 ORTHO05D005056 5.5e-07 57.4 31 87.1
PSO017G3652 Papaver somniferum HOM05D000278 ORTHO05D005056 5.5e-07 57.4 31 87.1
PSO478G3336 Papaver somniferum HOM05D000278 ORTHO05D005056 5.5e-07 57.4 31 87.1
PGR004G1930 Punica granatum HOM05D000278 ORTHO05D005056 5.5e-07 57.4 31 87.1
TWI14G0716 Tripterygium wilfordii HOM05D000278 ORTHO05D005056 5.5e-07 57.4 31 87.1
TAR636G0359 Trochodendron aralioides HOM05D000278 ORTHO05D005056 5.5e-07 57.4 31 87.1
ATR0317G001 Amborella trichopoda HOM05D000278 ORTHO05D005056 7.2e-07 57.0 30 86.7
unitig_0.g1316 Utricularia gibba HOM05D000278 ORTHO05D005056 7.2e-07 57.0 31 87.1
Gohir.A10G145900 Gossypium hirsutum HOM05D000278 ORTHO05D005056 9.4e-07 56.6 31 83.9
Gohir.D10G121200 Gossypium hirsutum HOM05D000278 ORTHO05D005056 9.4e-07 56.6 31 83.9
Gorai.011G133200 Gossypium raimondii HOM05D000278 ORTHO05D005056 9.4e-07 56.6 31 83.9
Lsat_1_v5_gn_8_34780 Lactuca sativa HOM05D000278 ORTHO05D005056 9.4e-07 56.6 31 83.9
Phvul.002G245800 Phaseolus vulgaris HOM05D000278 ORTHO05D005056 9.4e-07 56.6 31 87.1
Sed0027734 Sechium edule HOM05D000278 ORTHO05D020839 9.4e-07 56.6 30 86.7
Zm00001eb192630 Zea mays HOM05D000278 ORTHO05D005056 9.4e-07 56.6 31 87.1
Zm00001eb257580 Zea mays HOM05D000278 ORTHO05D005056 9.4e-07 56.6 31 87.1
Hund31260 Selenicereus undatus HOM05D000278 ORTHO05D020839 1.2e-06 56.2 30 90.0
Hund31261 Selenicereus undatus HOM05D000278 ORTHO05D020839 1.2e-06 56.2 30 90.0
Hund31269 Selenicereus undatus HOM05D000278 ORTHO05D020839 1.2e-06 56.2 30 90.0
Hund31270 Selenicereus undatus HOM05D000278 ORTHO05D020839 1.2e-06 56.2 30 90.0
BcaB04g19077 Brassica carinata HOM05D000278 ORTHO05D005056 2.1e-06 55.5 31 83.9
BcaC01g03587 Brassica carinata HOM05D000278 ORTHO05D005056 2.1e-06 55.5 31 83.9
A03p41540 Brassica napus HOM05D000278 ORTHO05D005056 2.1e-06 55.5 31 83.9
C03p50870 Brassica napus HOM05D000278 ORTHO05D005056 2.1e-06 55.5 31 83.9
BolC3t17371H Brassica oleracea HOM05D000278 ORTHO05D005056 2.1e-06 55.5 31 83.9
BraA03t13309Z Brassica rapa HOM05D000278 ORTHO05D005056 2.1e-06 55.5 31 83.9
CSS0004862 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005056 2.1e-06 55.5 36 75.0
CSS0015664 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005056 2.1e-06 55.5 36 75.0
Thhalv10020463m.g Eutrema salsugineum HOM05D000278 ORTHO05D005056 2.1e-06 55.5 31 83.9
SEGI_28943 Sequoiadendron giganteum HOM05D000278 ORTHO05D005056 2.1e-06 55.5 31 80.6
SalBow5G3381 Salvia bowleyana HOM05D000278 ORTHO05D005056 2.7e-06 55.1 31 80.6
Medtr8g088270 Medicago truncatula HOM05D000278 ORTHO05D005056 4.7e-06 54.3 31 83.9
Cre10.g439100 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D005056 6.1e-06 53.9 32 68.8
Lalb_Chr12g0204691 Lupinus albus HOM05D000278 ORTHO05D005056 6.1e-06 53.9 34 70.6
Prupe.5G058100 Prunus persica HOM05D000278 ORTHO05D005056 6.1e-06 53.9 31 80.6


User provided reference genes

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