Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.3e-149 533.1 294 100.0
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 5.3e-53 212.2 206 64.6
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 3.5e-49 199.5 208 60.1
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 1.3e-48 197.6 212 60.8
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 6.7e-48 195.3 207 60.4
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 6.7e-48 195.3 211 60.7
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.1e-47 194.5 211 59.7
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.5e-47 194.1 209 58.4
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 2.5e-47 193.4 208 60.6
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 4.8e-46 189.1 209 58.4
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 4.8e-46 189.1 220 55.9
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 1.1e-45 188.0 214 57.9
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 1.4e-45 187.6 209 57.9
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 4.0e-45 186.0 210 56.2
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 4.0e-45 186.0 210 56.2
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 5.3e-45 185.7 214 57.5
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 1.3e-43 181.0 209 55.5
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 1.7e-43 180.6 208 56.7
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.8e-43 179.5 212 52.4
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 4.9e-43 179.1 198 58.6
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 8.4e-43 178.3 210 52.4
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 8.4e-43 178.3 210 52.4
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 1.1e-42 177.9 230 51.3
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 1.1e-42 177.9 230 51.3
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 1.4e-42 177.6 213 55.4
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 1.4e-42 177.6 210 53.3
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 1.9e-42 177.2 212 51.9
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.9e-42 177.2 210 52.4
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 3.2e-42 176.4 219 53.9
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.2e-41 174.5 206 54.9
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.6e-41 174.1 206 55.3
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 1.6e-41 174.1 206 55.3
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 2.1e-41 173.7 204 55.4
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 2.1e-41 173.7 207 56.0
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 2.7e-41 173.3 211 52.1
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 3.5e-41 172.9 211 54.0
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 3.5e-41 172.9 209 54.5
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 4.6e-41 172.6 197 56.9
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.6e-41 172.6 210 52.4
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 4.6e-41 172.6 213 54.9
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.0e-40 171.4 209 53.1
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.0e-40 171.4 209 53.6
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 2.3e-40 170.2 209 53.1
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 3.9e-40 169.5 208 52.9
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 3.9e-40 169.5 212 53.3
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 3.9e-40 169.5 210 50.5
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 6.7e-40 168.7 213 51.2
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 1.1e-39 167.9 207 53.1
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 2.5e-39 166.8 215 54.9
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 5.7e-39 165.6 245 49.0
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 9.6e-39 164.9 205 55.1
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.3e-38 164.5 201 53.2
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.6e-38 164.1 214 49.5
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 2.1e-38 163.7 234 48.3
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 2.8e-38 163.3 207 53.1
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 3.7e-38 162.9 209 54.5
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 4.8e-38 162.5 209 54.1
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.3e-38 162.2 212 49.5
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 1.1e-37 161.4 201 52.2
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 3.1e-37 159.8 205 54.1
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 9.0e-37 158.3 206 51.9
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 1.2e-36 157.9 227 49.3
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 4.5e-36 156.0 231 48.9
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 4.5e-36 156.0 205 54.1
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 5.9e-36 155.6 210 47.6
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 7.6e-36 155.2 211 49.8
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 7.6e-36 155.2 232 47.0
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 1.7e-35 154.1 205 51.7
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.7e-35 154.1 207 49.8
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 2.2e-35 153.7 209 50.7
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 5.0e-35 152.5 226 48.2
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 5.0e-35 152.5 208 51.4
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 6.5e-35 152.1 226 49.6
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 1.1e-34 151.4 227 47.6
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 1.1e-34 151.4 227 47.6
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 1.4e-34 151.0 193 50.8
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 2.5e-34 150.2 226 47.8
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 2.5e-34 150.2 214 45.8
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 7.2e-34 148.7 245 44.5
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 1.6e-33 147.5 211 49.3
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 2.7e-33 146.7 215 49.8
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 2.7e-33 146.7 222 45.5
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 4.6e-33 146.0 211 49.3
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 4.6e-33 146.0 211 49.3
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 1.3e-32 144.4 219 45.2
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 4.3e-31 139.4 209 46.4
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 7.4e-31 138.7 211 49.3
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 7.4e-31 138.7 205 48.8
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 9.7e-31 138.3 215 47.4
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 1.6e-30 137.5 195 48.7
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 1.1e-29 134.8 206 47.1
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 4.1e-29 132.9 223 44.8
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 1.5e-28 131.0 209 45.5
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.0e-28 130.6 240 43.8
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 2.9e-27 126.7 214 43.5
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 5.0e-27 125.9 197 47.2
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 8.5e-27 125.2 214 42.5
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 1.4e-26 124.4 209 44.5
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 1.9e-26 124.0 161 49.1
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 1.9e-26 124.0 209 43.5
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 5.5e-26 122.5 242 40.1
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 2.7e-25 120.2 213 42.3
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 6.1e-25 119.0 209 43.1
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 7.9e-25 118.6 222 40.1
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 3.9e-24 116.3 137 53.3
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 6.7e-24 115.5 224 40.2
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 8.8e-24 115.2 220 44.5
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 1.5e-23 114.4 213 41.8
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 1.5e-23 114.4 207 42.5
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 2.6e-23 113.6 208 40.4
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 2.6e-23 113.6 208 40.4
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 9.7e-23 111.7 206 42.7
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 1.7e-22 110.9 187 42.8
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 6.9e-21 105.5 163 46.6
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 2.6e-20 103.6 209 40.7
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 1.0e-19 101.7 240 39.6
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 1.7e-19 100.9 175 45.1
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 3.8e-19 99.8 221 37.1
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 8.5e-19 98.6 216 40.3
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 3.2e-18 96.7 183 39.3
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 5.5e-18 95.9 81 65.4
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 9.4e-18 95.1 218 35.8
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 9.4e-18 95.1 169 42.6
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 7.4e-15 85.5 165 47.3
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 9.7e-15 85.1 166 39.8
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 2.2e-14 84.0 175 40.0
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 6.3e-14 82.4 192 39.1
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.1e-13 81.6 78 55.1
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 7.0e-13 79.0 214 31.8
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 1.0e-11 75.1 217 30.9
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.1e-10 71.6 181 34.3
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 4.2e-10 69.7 203 33.5
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 1.8e-08 64.3 173 36.4
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 5.2e-08 62.8 171 33.9
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 2.6e-07 60.5 78 50.0
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 5.7e-07 59.3 39 64.1
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 9.7e-07 58.5 170 34.1
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 1.7e-06 57.8 38 63.2
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 3.7e-06 56.6 227 30.0


User provided reference genes

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