Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24611 Nelumbo nucifera HOM05D007562 ORTHO05D009721 0.0e+00 1787.7 1021 100.0
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 1.2e-197 694.5 1076 47.0
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 2.7e-144 517.3 1049 36.4
PSO063G7346 Papaver somniferum HOM05D007562 ORTHO05D009721 2.4e-129 467.6 881 37.9
GSVIVG01016281001 Vitis vinifera HOM05D007562 ORTHO05D009721 2.8e-125 454.1 1064 34.1
PSO339G1903 Papaver somniferum HOM05D007562 ORTHO05D009721 3.9e-119 433.7 888 36.7
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 8.3e-114 416.0 1066 36.9
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 1.4e-108 398.7 685 40.6
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 1.2e-96 359.0 1077 29.7
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 4.3e-94 350.5 861 33.8
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 3.3e-86 324.3 880 30.3
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 6.2e-85 320.1 1079 29.4
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 7.6e-83 313.2 1057 29.0
TWI63G1657 Tripterygium wilfordii HOM05D007562 ORTHO05D009721 2.3e-79 301.6 1060 31.6
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 1.5e-75 288.9 1081 28.7
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 7.6e-75 286.6 1053 28.2
CSS0037048 Camellia sinensis var. sinensis HOM05D007562 ORTHO05D009721 1.4e-73 282.3 1031 28.1
Eucgr.G02827 Eucalyptus grandis HOM05D007562 ORTHO05D009721 1.9e-70 271.9 941 29.3
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 2.5e-70 271.6 1068 27.0
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 1.6e-69 268.9 1056 28.0
Lalb_Chr19g0129691 Lupinus albus HOM05D007562 ORTHO05D009721 1.5e-67 262.3 1089 27.3
Cc09_g02120 Coffea canephora HOM05D007562 ORTHO05D009721 2.9e-66 258.1 1061 25.6
FAN01G2123 Fragaria x ananassa HOM05D007562 ORTHO05D009721 2.7e-64 251.5 1050 27.5
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 1.8e-63 248.8 323 48.3
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 3.0e-63 248.1 992 27.2
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 6.7e-63 246.9 329 46.5
Manes.07G100520 Manihot esculenta HOM05D007562 ORTHO05D009721 1.1e-62 246.1 1122 26.1
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 3.3e-62 244.6 1027 27.9
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 7.4e-62 243.4 1049 27.5
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 7.4e-62 243.4 992 27.1
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 1.3e-61 242.7 992 27.0
FvH4_7g19620 Fragaria vesca HOM05D007562 ORTHO05D009721 2.2e-61 241.9 1060 26.6
FAN03G1079 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.5e-59 235.7 1054 26.3
Ciclev10033636m.g Citrus clementina HOM05D007562 ORTHO05D009721 5.0e-58 230.7 627 33.3
Ciclev10033468m.g Citrus clementina HOM05D007562 ORTHO05D009721 6.5e-58 230.3 624 33.5
COL.COLO4_23667 Corchorus olitorius HOM05D007562 ORTHO05D009721 1.9e-57 228.8 644 33.2
Cpa.g.sc53.80 Carica papaya HOM05D007562 ORTHO05D009721 2.5e-57 228.4 372 41.9
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 4.2e-57 227.6 1068 26.0
CDE08G0023 Ceratophyllum demersum HOM05D007562 ORTHO05D009721 9.4e-57 226.5 340 42.4
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 7.9e-56 223.4 1083 25.7
Phvul.004G082400 Phaseolus vulgaris HOM05D007562 ORTHO05D009721 1.8e-55 222.2 1034 25.4
ClCG05G020990 Citrullus lanatus HOM05D007562 ORTHO05D009721 2.8e-53 214.9 367 39.8
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 3.7e-53 214.5 675 29.6
Medtr6g060178 Medicago truncatula HOM05D007562 ORTHO05D009721 5.3e-52 210.7 636 31.1
Ciclev10033616m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.0e-51 208.8 372 38.4
VMungo0464G0183 Vigna mungo HOM05D007562 ORTHO05D009721 7.7e-51 206.8 1057 24.0
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 1.0e-50 206.5 426 39.0
Peaxi162Scf00072g00627 Petunia axillaris HOM05D007562 ORTHO05D009721 1.5e-49 202.6 1038 24.9
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 7.2e-49 200.3 1090 25.6
Ciclev10033649m.g Citrus clementina HOM05D007562 ORTHO05D009721 9.4e-49 199.9 627 31.1
Oeu043937.1 Olea europaea HOM05D007562 ORTHO05D009721 8.2e-45 186.8 1038 24.7
DCAR_004783 Daucus carota HOM05D007562 ORTHO05D009721 1.1e-44 186.4 364 33.8
TPR.G20136 Trifolium pratense HOM05D007562 ORTHO05D009721 1.8e-44 185.7 617 29.8
MELO3C012431.2 Cucumis melo HOM05D007562 ORTHO05D009721 7.0e-44 183.7 416 35.6
Nitab4.5_0000575g0170 Nicotiana tabacum HOM05D007562 ORTHO05D009721 1.2e-43 183.0 927 25.8
Ciclev10033702m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.0e-43 182.2 301 41.5
CsaV3_5G036330 Cucumis sativus L. HOM05D007562 ORTHO05D009721 2.0e-43 182.2 368 36.7
Nitab4.5_0010206g0020 Nicotiana tabacum HOM05D007562 ORTHO05D009721 1.3e-42 179.5 365 37.5
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 6.5e-42 177.2 364 38.2
FAN10G0414 Fragaria x ananassa HOM05D007562 ORTHO05D009721 7.2e-41 173.7 1071 22.9
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 4.7e-40 171.0 943 24.3
arahy.Tifrunner.gnm1.ann1.264L58 Arachis hypogaea HOM05D007562 ORTHO05D009721 8.0e-40 170.2 1056 23.8
Sed0018277 Sechium edule HOM05D007562 ORTHO05D009721 1.8e-39 169.1 366 33.6
Solyc04g049440.2 Solanum lycopersicum HOM05D007562 ORTHO05D009721 1.5e-38 166.0 674 26.7
Thhalv10015291m.g Eutrema salsugineum HOM05D007562 ORTHO05D009721 1.4e-36 159.5 362 35.1
CARHR198320 Cardamine hirsuta HOM05D007562 ORTHO05D009721 5.3e-36 157.5 370 34.3
C02p07440 Brassica napus HOM05D007562 ORTHO05D009721 7.0e-36 157.1 368 33.7
BolC2t06675H Brassica oleracea HOM05D000286 ORTHO05D009721 7.7e-35 153.7 304 37.5
Sp6g29050 Schrenkiella parvula HOM05D007562 ORTHO05D009721 1.0e-34 153.3 631 29.0
AL6G25790 Arabidopsis lyrata HOM05D007562 ORTHO05D009721 1.3e-34 152.9 373 33.2
AT5G14990 Arabidopsis thaliana HOM05D007562 ORTHO05D009721 1.3e-34 152.9 305 38.0
BcaC03g13438 Brassica carinata HOM05D007562 ORTHO05D009721 2.2e-34 152.1 631 28.2
BraA02t05255Z Brassica rapa HOM05D007562 ORTHO05D009721 2.2e-34 152.1 632 28.5
Carub.0006s1315 Capsella rubella HOM05D007562 ORTHO05D009721 5.0e-34 151.0 418 32.1
A02p02820 Brassica napus HOM05D007562 ORTHO05D009721 2.5e-33 148.7 627 27.0
Os04g0521600 Oryza sativa ssp. japonica HOM05D007562 ORTHO05D004736 2.2e-29 135.6 323 34.4
Zm00001eb077110 Zea mays HOM05D007562 ORTHO05D009721 2.8e-29 135.2 337 32.0
Aa31LG11G14520 Aethionema arabicum HOM05D007562 ORTHO05D009721 1.1e-28 133.3 343 31.2
Cc09_g02140 Coffea canephora HOM05D007562 ORTHO05D009721 2.4e-28 132.1 269 37.9
SGA_v2.0_scaffold71G24023 Striga asiatica HOM05D007562 ORTHO05D009721 2.7e-27 128.6 382 31.7
Migut.F01779 Erythranthe guttata HOM05D007562 ORTHO05D009721 5.9e-27 127.5 242 38.0
FAN06G4675 Fragaria x ananassa HOM05D007562 ORTHO05D009721 2.5e-25 122.1 232 35.8
ECA233G5285 Erigeron canadensis HOM05D007562 ORTHO05D009721 3.3e-17 95.1 322 28.6
SalBow3G0440 Salvia bowleyana HOM05D007562 ORTHO05D009721 1.6e-16 92.8 250 33.2
Psat1g112000 Pisum sativum HOM05D007562 ORTHO05D009721 2.5e-09 68.9 492 22.6
SEGI_22037 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 2.5e-09 68.9 158 27.8
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 3.6e-08 65.1 394 21.6
Actinidia38851 Actinidia chinensis HOM05D007562 ORTHO05D009721 2.3e-07 62.4 107 30.8
Lsat_1_v5_gn_8_19320 Lactuca sativa HOM05D007562 ORTHO05D009721 1.5e-06 59.7 124 31.5
Cpa.g.sc53.79 Carica papaya HOM05D007562 ORTHO05D009721 7.5e-06 57.4 276 25.0


User provided reference genes

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