Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 4.0e-131 471.5 247 100.0
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 6.3e-84 314.7 219 75.3
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 5.5e-80 301.6 229 66.4
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 2.2e-76 289.7 229 65.5
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 6.3e-76 288.1 228 63.2
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 8.3e-76 287.7 228 65.8
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 1.4e-75 287.0 229 66.4
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 4.1e-75 285.4 247 61.1
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 7.0e-75 284.6 227 64.3
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 2.3e-73 279.6 231 61.5
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 3.9e-73 278.9 227 61.7
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 6.6e-73 278.1 225 64.4
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 7.3e-72 274.6 203 70.9
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 1.2e-71 273.9 229 62.4
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 1.2e-71 273.9 213 67.1
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 1.2e-71 273.9 227 59.9
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 4.7e-71 271.9 226 62.4
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 1.0e-70 270.8 228 61.8
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 1.0e-70 270.8 229 63.3
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 2.3e-70 269.6 230 63.9
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 8.9e-70 267.7 201 69.2
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 2.6e-69 266.2 229 62.9
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 3.4e-69 265.8 202 66.3
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 3.4e-69 265.8 228 61.0
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 5.8e-69 265.0 225 58.7
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 7.5e-69 264.6 224 63.4
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 7.5e-69 264.6 231 60.6
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 2.9e-68 262.7 229 60.7
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 8.3e-68 261.2 229 60.7
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 1.9e-67 260.0 225 58.7
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 1.9e-67 260.0 224 63.4
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 3.2e-67 259.2 229 59.0
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 4.6e-66 255.4 225 59.1
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 4.6e-66 255.4 225 60.4
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 6.0e-66 255.0 223 60.5
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 7.8e-66 254.6 229 57.6
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 5.0e-65 251.9 225 57.8
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 3.3e-64 249.2 229 58.1
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 1.2e-63 247.3 228 58.3
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 1.1e-62 244.2 231 56.7
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 1.4e-62 243.8 201 63.2
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 3.1e-62 242.7 223 58.3
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 5.2e-62 241.9 229 56.8
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 8.9e-62 241.1 169 71.6
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 2.0e-61 240.0 231 57.1
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 3.4e-61 239.2 228 58.8
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 3.4e-61 239.2 231 56.3
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 3.4e-61 239.2 207 55.6
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 4.4e-61 238.8 233 57.5
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 1.1e-59 234.2 212 60.4
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 7.1e-59 231.5 228 55.3
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 9.2e-59 231.1 185 65.4
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 1.6e-58 230.3 230 54.8
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 1.6e-58 230.3 204 59.3
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 1.7e-57 226.9 225 52.0
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 5.1e-57 225.3 208 58.7
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 2.5e-56 223.0 227 55.9
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.8e-55 219.5 189 61.4
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.8e-55 219.5 189 61.4
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 4.9e-52 208.8 217 53.5
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 2.4e-51 206.5 231 47.2
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 4.1e-51 205.7 190 60.0
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 1.2e-50 204.1 229 47.6
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 7.8e-50 201.4 203 54.2
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 1.7e-49 200.3 153 68.6
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 8.9e-46 188.0 132 72.0
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 7.8e-42 174.9 228 45.6
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 3.0e-41 172.9 154 57.8
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 3.0e-41 172.9 228 46.5
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 1.1e-40 171.0 161 52.2
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 9.6e-40 167.9 158 58.9
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 4.8e-39 165.6 111 73.9
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 1.8e-38 163.7 144 62.5
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 4.9e-36 155.6 119 68.9
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 4.9e-36 155.6 119 68.9
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 1.4e-35 154.1 126 63.5
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 9.3e-35 151.4 115 64.3
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 9.3e-35 151.4 115 64.3
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 2.1e-34 150.2 129 57.4
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 3.9e-33 146.0 229 44.5
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 7.3e-32 141.7 135 56.3
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 9.6e-32 141.4 111 65.8
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 1.4e-30 137.5 116 59.5
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 1.2e-29 134.4 112 63.4
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 3.4e-29 132.9 157 47.1
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 5.8e-29 132.1 111 60.4
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.8e-28 129.4 135 53.3
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.2e-27 126.3 101 62.4
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 4.2e-27 125.9 131 56.5
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 1.6e-26 124.0 123 49.6
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.5e-24 117.5 89 65.2
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 1.3e-23 114.4 119 51.3
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 1.8e-22 110.5 70 80.0
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 1.7e-20 104.0 194 30.4
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 2.9e-20 103.2 64 76.6
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 1.4e-19 100.9 100 51.0
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 1.9e-19 100.5 223 29.6
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 2.3e-17 93.6 74 62.2
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 3.7e-15 86.3 73 58.9
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 1.1e-14 84.7 79 57.0
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 4.5e-13 79.3 103 38.8
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 5.9e-13 79.0 91 41.8
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 4.3e-08 62.8 82 34.1


User provided reference genes

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