Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24541 Nelumbo nucifera HOM05D000179 ORTHO05D000107 3.3e-23 111.7 100 100.0
MBI13_g21684_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 4.3e-07 58.2 29 86.2
Nn3g18479 Nelumbo nucifera HOM05D000179 ORTHO05D000107 4.3e-07 58.2 50 62.0
Nn4g24574 Nelumbo nucifera HOM05D000179 ORTHO05D000107 4.3e-07 58.2 50 62.0
TAR629G2437 Trochodendron aralioides HOM05D000179 ORTHO05D000107 4.3e-07 58.2 50 62.0
Aqoxy3G04054 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 9.6e-07 57.0 50 60.0
Cc11_g05630 Coffea canephora HOM05D000179 ORTHO05D000107 9.6e-07 57.0 29 82.8
Duzib068G0009 Durio zibethinus HOM05D000179 ORTHO05D000107 9.6e-07 57.0 50 60.0
PSO063G1128 Papaver somniferum HOM05D000179 ORTHO05D000107 9.6e-07 57.0 50 60.0
PSO782G2107 Papaver somniferum HOM05D000179 ORTHO05D000107 9.6e-07 57.0 50 60.0
CSS0005172 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 1.3e-06 56.6 50 60.0
CSS0010097 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 1.3e-06 56.6 50 60.0
DCAR_026826 Daucus carota HOM05D000179 ORTHO05D000107 1.3e-06 56.6 50 60.0
DCAR_030310 Daucus carota HOM05D000179 ORTHO05D000107 1.3e-06 56.6 50 60.0
HanXRQChr12g0366021 Helianthus annuus HOM05D000179 ORTHO05D000107 1.3e-06 56.6 50 58.0
Lj3A859G67 Lonicera japonica HOM05D000179 ORTHO05D000107 1.3e-06 56.6 50 60.0
Lj6A730G64 Lonicera japonica HOM05D000179 ORTHO05D000107 1.3e-06 56.6 50 60.0
Rhsim09G0084600 Rhododendron simsii HOM05D000179 ORTHO05D000107 1.3e-06 56.6 50 60.0
TAR374G1027 Trochodendron aralioides HOM05D000179 ORTHO05D000107 1.3e-06 56.6 50 60.0
vmacro10749 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 1.3e-06 56.6 50 60.0
Cpa.g.sc7.131 Carica papaya HOM05D000179 ORTHO05D000107 1.6e-06 56.2 29 82.8
Eucgr.H00574 Eucalyptus grandis HOM05D000179 ORTHO05D000107 2.1e-06 55.8 50 60.0
Lsat_1_v5_gn_4_22261 Lactuca sativa HOM05D000179 ORTHO05D000107 2.1e-06 55.8 50 58.0
Atru.chr9.1588 Acer truncatum HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Actinidia34645 Actinidia chinensis HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
arahy.Tifrunner.gnm1.ann1.DDPG02 Arachis hypogaea HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
arahy.Tifrunner.gnm1.ann1.MP8D0L Arachis hypogaea HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
CDE05G3611 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 56.0
ClCG04G012740 Citrullus lanatus HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Ciclev10020125m.g Citrus clementina HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Cc04_g09130 Coffea canephora HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
COL.COLO4_32724 Corchorus olitorius HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Dinv02298 Davidia involucrata HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 58.0
Dinv09767 Davidia involucrata HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
ECA234G2438 Erigeron canadensis HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 58.0
FvH4_5g17840 Fragaria vesca HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
FAN04G1785 Fragaria x ananassa HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
FAN08G1538 Fragaria x ananassa HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
FAN13G0721 Fragaria x ananassa HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
FAN18G2644 Fragaria x ananassa HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Glyma.07G107500 Glycine max HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Glyma.09G170200 Glycine max HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Gohir.A03G091000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Gohir.A09G173300 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Gohir.A11G002000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Gohir.D02G119300 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Gohir.D11G001600 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Gorai.005G134600 Gossypium raimondii HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Gorai.006G190500 Gossypium raimondii HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Gorai.007G002600 Gossypium raimondii HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
HanXRQChr16g0527681 Helianthus annuus HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 58.0
HanXRQChr17g0566341 Helianthus annuus HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 58.0
Lsat_1_v5_gn_5_34921 Lactuca sativa HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 58.0
Lj2g0014266 Lotus japonicus HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Lalb_Chr16g0386891 Lupinus albus HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Phvul.004G145900 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Psat1g124720 Pisum sativum HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Potri.012G040200 Populus trichocarpa HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Potri.015G033100 Populus trichocarpa HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
RcHm_v2.0_Chr7g0177741 Rosa chinensis HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Sabra15G0027200 Salix brachista HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
Thecc.09G204100 Theobroma cacao HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
TPR.G8217 Trifolium pratense HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
TWI60G1042 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
VMungo0464G1769 Vigna mungo HOM05D000179 ORTHO05D000107 2.8e-06 55.5 50 60.0
GSVIVG01008486001 Vitis vinifera HOM05D000179 ORTHO05D000107 2.8e-06 55.5 29 82.8
CAN.G637.28 Capsicum annuum HOM05D000179 ORTHO05D000107 3.7e-06 55.1 50 60.0
Cfa022225 Carpinus fangiana HOM05D000179 ORTHO05D000107 3.7e-06 55.1 50 60.0
Ciclev10015315m.g Citrus clementina HOM05D000179 ORTHO05D000107 3.7e-06 55.1 50 60.0
Haze_10802 Corylus avellana HOM05D000179 ORTHO05D000107 3.7e-06 55.1 50 60.0
Nitab4.5_0000033g0350 Nicotiana tabacum HOM05D000179 ORTHO05D000107 3.7e-06 55.1 50 60.0
Nitab4.5_0004454g0060 Nicotiana tabacum HOM05D000179 ORTHO05D000107 3.7e-06 55.1 50 60.0
Peaxi162Scf00171g00727 Petunia axillaris HOM05D000179 ORTHO05D000107 3.7e-06 55.1 50 60.0
Sopen03g028770 Solanum pennellii HOM05D000179 ORTHO05D000107 3.7e-06 55.1 50 60.0
PGSC0003DMG400031049 Solanum tuberosum HOM05D000179 ORTHO05D000107 3.7e-06 55.1 50 60.0
Gohir.A12G271800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 4.8e-06 54.7 50 58.0
Gohir.D12G272500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 4.8e-06 54.7 50 58.0
Gorai.008G293000 Gossypium raimondii HOM05D000179 ORTHO05D000107 4.8e-06 54.7 50 58.0
Hma1.2p1_0471F.1_g159300 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 4.8e-06 54.7 50 58.0
Lj9A415T54 Lonicera japonica HOM05D000179 ORTHO05D000107 4.8e-06 54.7 50 58.0
Nitab4.5_0000521g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 4.8e-06 54.7 29 75.9
Nitab4.5_0002202g0020 Nicotiana tabacum HOM05D000179 ORTHO05D000107 4.8e-06 54.7 29 75.9
Peaxi162Scf00033g02311 Petunia axillaris HOM05D000179 ORTHO05D000107 4.8e-06 54.7 29 75.9
SMO119G0200 Selaginella moellendorffii HOM05D000179 ORTHO05D000107 4.8e-06 54.7 29 79.3
Actinidia39836 Actinidia chinensis HOM05D000179 ORTHO05D000107 6.2e-06 54.3 50 58.0
MSTRG.4632 Avicennia marina HOM05D000179 ORTHO05D000107 6.2e-06 54.3 50 58.0
CDE05G3493 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 6.2e-06 54.3 50 56.0
Dinv20496 Davidia involucrata HOM05D000179 ORTHO05D000107 6.2e-06 54.3 50 56.0
Dinv20546 Davidia involucrata HOM05D000179 ORTHO05D000107 6.2e-06 54.3 50 56.0
Glyma.05G248300 Glycine max HOM05D000179 ORTHO05D000107 6.2e-06 54.3 50 58.0
Hma1.2p1_0095F.1_g047490 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 6.2e-06 54.3 50 56.0
Lsat_1_v5_gn_8_34221 Lactuca sativa HOM05D000179 ORTHO05D000107 6.2e-06 54.3 50 56.0
Lalb_Chr05g0221461 Lupinus albus HOM05D000179 ORTHO05D000107 6.2e-06 54.3 50 58.0
Lalb_Chr24g0398321 Lupinus albus HOM05D000179 ORTHO05D000107 6.2e-06 54.3 50 58.0
MD14G1241600 Malus domestica HOM05D000179 ORTHO05D000107 6.2e-06 54.3 29 79.3
Manes.06G001400 Manihot esculenta HOM05D000179 ORTHO05D000107 6.2e-06 54.3 50 58.0
Manes.14G173800 Manihot esculenta HOM05D000179 ORTHO05D000107 6.2e-06 54.3 50 58.0
Nitab4.5_0002870g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 6.2e-06 54.3 28 85.7
Prupe.5G239100 Prunus persica HOM05D000179 ORTHO05D000107 6.2e-06 54.3 50 58.0
SEGI_16119 Sequoiadendron giganteum HOM05D000179 ORTHO05D000107 6.2e-06 54.3 29 75.9
SEGI_21365 Sequoiadendron giganteum HOM05D000179 ORTHO05D000107 6.2e-06 54.3 29 75.9
SEGI_23123 Sequoiadendron giganteum HOM05D000179 ORTHO05D000107 6.2e-06 54.3 29 75.9
Sc10g0008970 Simmondsia chinensis HOM05D000179 ORTHO05D000107 6.2e-06 54.3 50 58.0
Solyc03g098070.3 Solanum lycopersicum HOM05D000179 ORTHO05D000107 6.2e-06 54.3 28 85.7
Atru.chr11.991 Acer truncatum HOM05D000179 ORTHO05D000107 8.2e-06 53.9 29 79.3
CANSAT78G1491 Cannabis sativa HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
CAN.G65.84 Capsicum annuum HOM05D000179 ORTHO05D000107 8.2e-06 53.9 29 79.3
CiPaw.05G159500 Carya illinoinensis HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
CiPaw.06G058100 Carya illinoinensis HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
COL.COLO4_27569 Corchorus olitorius HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
MELO3C001929.2 Cucumis melo HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
CsaV3_1G004880 Cucumis sativus L. HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
Duzib251G0522 Durio zibethinus HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
Duzib268G1689 Durio zibethinus HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
ECA233G0140 Erigeron canadensis HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 54.0
Gohir.A03G113400 Gossypium hirsutum HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
Gohir.D02G137800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
Gorai.005G154300 Gossypium raimondii HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
Peaxi162Scf00643g00648 Petunia axillaris HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
Phvul.002G332500 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
PGR083G2163 Punica granatum HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
QL03p039252 Quercus lobata HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
SalBow1G0479 Salvia bowleyana HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
Solyc06g072360.3 Solanum lycopersicum HOM05D000179 ORTHO05D000107 8.2e-06 53.9 29 79.3
Sopen06g028730 Solanum pennellii HOM05D000179 ORTHO05D000107 8.2e-06 53.9 29 79.3
PGSC0003DMG400026959 Solanum tuberosum HOM05D000179 ORTHO05D000107 8.2e-06 53.9 29 79.3
Thecc.02G302800 Theobroma cacao HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0
TWI81G0866 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 8.2e-06 53.9 29 79.3
VMungo0251G3545 Vigna mungo HOM05D000179 ORTHO05D000107 8.2e-06 53.9 29 79.3
GSVIVG01011587001 Vitis vinifera HOM05D000179 ORTHO05D000107 8.2e-06 53.9 50 58.0


User provided reference genes

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