Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 5.0e-243 844.0 408 100.0
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 8.4e-166 587.4 405 69.4
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 1.9e-154 549.7 397 67.0
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 9.6e-154 547.4 400 68.0
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 7.6e-151 537.7 394 68.0
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 1.4e-149 533.5 402 65.9
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 1.6e-148 530.0 405 64.9
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 2.5e-146 522.7 408 63.2
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 4.8e-145 518.5 397 65.0
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 9.0e-144 514.2 409 62.6
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 2.7e-140 502.7 396 61.9
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 7.9e-140 501.1 396 65.2
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 6.7e-139 498.0 402 59.2
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 1.5e-138 496.9 402 59.0
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 3.3e-138 495.7 391 62.7
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 7.4e-138 494.6 396 61.4
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 3.7e-137 492.3 397 61.0
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 1.1e-136 490.7 402 58.7
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 1.8e-136 490.0 395 62.0
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 3.1e-136 489.2 398 59.0
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 3.1e-136 489.2 398 62.3
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 4.0e-136 488.8 405 60.5
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 6.5e-134 481.5 396 59.3
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 1.1e-133 480.7 398 60.1
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 1.9e-133 479.9 393 60.6
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 2.5e-133 479.6 398 59.8
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 2.5e-133 479.6 390 62.1
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 3.2e-133 479.2 396 60.9
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 5.5e-133 478.4 398 60.6
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 7.1e-133 478.0 398 60.6
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 6.0e-132 474.9 393 59.5
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 1.0e-131 474.2 396 59.6
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 1.5e-130 470.3 392 58.7
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 1.9e-130 469.9 398 59.5
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 1.9e-130 469.9 395 59.2
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 3.3e-130 469.2 398 58.8
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 4.3e-130 468.8 394 58.4
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 1.3e-129 467.2 390 60.3
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 1.6e-129 466.8 395 59.0
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 2.8e-129 466.1 405 59.5
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 1.8e-128 463.4 375 58.9
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 9.0e-128 461.1 393 58.5
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 1.5e-127 460.3 395 57.2
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 1.5e-127 460.3 388 58.2
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 1.5e-127 460.3 396 57.1
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 5.9e-127 458.4 408 58.3
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 1.0e-126 457.6 396 55.8
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 5.0e-126 455.3 393 58.3
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 6.5e-126 454.9 378 60.6
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 1.1e-125 454.1 395 58.0
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 2.5e-125 453.0 384 60.4
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 7.2e-125 451.4 394 59.1
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 9.4e-125 451.1 405 55.1
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 3.6e-124 449.1 392 57.9
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 3.6e-124 449.1 392 57.9
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 3.6e-124 449.1 391 57.5
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 5.1e-123 445.3 393 58.0
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 6.7e-123 444.9 398 55.3
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 5.7e-122 441.8 432 52.3
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 8.2e-121 438.0 392 57.7
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 1.8e-120 436.8 407 55.8
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 1.2e-119 434.1 394 56.3
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 7.7e-119 431.4 374 58.0
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 7.7e-119 431.4 398 54.3
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.3e-118 430.6 359 60.4
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 9.4e-117 424.5 446 50.0
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 9.4e-117 424.5 344 61.6
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 2.1e-116 423.3 381 57.2
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 1.0e-115 421.0 374 57.5
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 1.4e-115 420.6 401 54.6
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 2.3e-115 419.9 375 54.7
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 3.0e-115 419.5 381 57.0
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 4.4e-114 415.6 392 55.1
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 4.8e-113 412.1 414 53.4
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 6.3e-113 411.8 395 54.2
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 1.5e-111 407.1 398 53.8
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 1.5e-111 407.1 391 54.0
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.4e-109 400.6 415 51.1
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 9.4e-109 397.9 398 50.0
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 9.4e-109 397.9 397 52.4
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 2.8e-105 386.3 392 52.6
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 7.0e-104 381.7 297 60.6
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 2.5e-101 373.2 404 51.0
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 4.7e-92 342.4 335 52.5
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 1.2e-90 337.8 323 55.4
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 4.4e-90 335.9 330 55.2
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 9.8e-90 334.7 239 70.3
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 2.8e-89 333.2 415 45.8
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 1.7e-86 323.9 286 58.7
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 5.0e-86 322.4 396 44.2
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 3.3e-85 319.7 395 44.6
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 5.5e-85 318.9 339 52.5
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 1.4e-83 314.3 470 38.9
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 1.8e-83 313.9 397 44.3
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 1.4e-80 304.3 316 52.2
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 1.7e-73 280.8 285 52.6
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 4.0e-67 259.6 306 46.1
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 5.8e-66 255.8 283 50.5
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 7.8e-63 245.4 164 64.6
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 3.0e-62 243.4 275 50.5
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 8.1e-60 235.3 290 45.9
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 1.8e-59 234.2 251 47.4
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 5.8e-58 229.2 361 39.1
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 3.7e-57 226.5 142 71.1
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.7e-54 217.6 127 75.6
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 2.0e-50 204.1 246 48.0
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 1.1e-48 198.4 236 45.3
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 2.3e-46 190.7 109 78.9
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 8.7e-46 188.7 150 58.7
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 3.6e-44 183.3 122 61.5
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 3.6e-44 183.3 102 76.5
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 5.3e-43 179.5 112 69.6
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 8.4e-41 172.2 197 44.2
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 9.6e-37 158.7 100 71.0
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 1.6e-36 157.9 90 80.0
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 3.8e-33 146.7 131 55.7
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 3.7e-28 130.2 112 58.0
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 2.0e-26 124.4 90 60.0
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 8.7e-22 109.0 198 32.8
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 4.3e-21 106.7 102 49.0
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 4.3e-21 106.7 63 73.0
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 4.3e-21 106.7 102 49.0
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 5.3e-19 99.8 90 51.1
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 1.0e-17 95.5 60 68.3
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 3.8e-17 93.6 58 70.7
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 9.3e-16 89.0 51 70.6
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 2.7e-15 87.4 50 74.0
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 7.9e-15 85.9 238 29.8
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 1.3e-14 85.1 50 70.0
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 1.1e-13 82.0 90 50.0
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 3.4e-10 70.5 79 49.4
MCO06G046 Micromonas commoda HOM05D005922 ORTHO05D006934 8.5e-09 65.9 102 34.3
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 1.6e-07 61.6 177 28.2
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 1.6e-07 61.6 177 28.2
Zm00001eb371330 Zea mays HOM05D005922 ORTHO05D006934 1.6e-07 61.6 88 37.5


User provided reference genes

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