Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24452 Nelumbo nucifera HOM05D000618 ORTHO05D000454 1.8e-37 158.7 76 100.0
Nn4g23169 Nelumbo nucifera HOM05D000618 ORTHO05D000454 6.0e-25 117.1 72 80.6
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.1e-18 96.3 72 66.7
TAR374G1382 Trochodendron aralioides HOM05D000618 ORTHO05D000454 5.6e-15 84.0 72 58.3
Nn3g17243 Nelumbo nucifera HOM05D000618 ORTHO05D000454 7.3e-15 83.6 70 58.6
TAR371G1289 Trochodendron aralioides HOM05D000618 ORTHO05D000454 9.5e-15 83.2 72 59.7
Dinv19963 Davidia involucrata HOM05D000618 ORTHO05D000454 4.0e-13 77.8 72 54.2
MBI05_g29536_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 5.2e-13 77.4 59 61.0
Duzib084G0238 Durio zibethinus HOM05D000618 ORTHO05D000454 6.8e-13 77.0 72 55.6
vmacro16546 Vaccinium macrocarpon HOM05D000618 ORTHO05D000454 6.8e-13 77.0 72 56.9
Actinidia04887 Actinidia chinensis HOM05D000618 ORTHO05D000454 8.9e-13 76.6 72 54.2
MBI05_g45847_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 8.9e-13 76.6 55 65.5
Gohir.D11G034600 Gossypium hirsutum HOM05D000618 ORTHO05D000454 1.2e-12 76.3 68 57.4
Gohir.D11G034900 Gossypium hirsutum HOM05D000618 ORTHO05D000454 1.2e-12 76.3 68 58.8
Gorai.007G037500 Gossypium raimondii HOM05D000618 ORTHO05D000454 1.2e-12 76.3 68 57.4
Actinidia37627 Actinidia chinensis HOM05D000618 ORTHO05D000454 3.4e-12 74.7 72 52.8
Dinv38713 Davidia involucrata HOM05D000618 ORTHO05D000454 3.4e-12 74.7 72 54.2
Gohir.A12G177600 Gossypium hirsutum HOM05D000618 ORTHO05D000454 5.8e-12 73.9 72 56.9
GSVIVG01008001001 Vitis vinifera HOM05D000618 ORTHO05D000454 5.8e-12 73.9 75 54.7
Gohir.A11G031241 Gossypium hirsutum HOM05D000618 ORTHO05D000454 7.6e-12 73.6 68 57.4
Atru.chr9.226 Acer truncatum HOM05D000618 ORTHO05D000454 9.9e-12 73.2 72 54.2
Gohir.A11G031421 Gossypium hirsutum HOM05D000618 ORTHO05D000454 1.7e-11 72.4 68 55.9
Duzib205G1270 Durio zibethinus HOM05D000618 ORTHO05D000454 2.2e-11 72.0 72 56.9
Gohir.D12G180000 Gossypium hirsutum HOM05D000618 ORTHO05D000454 2.2e-11 72.0 72 55.6
Gorai.008G193100 Gossypium raimondii HOM05D000618 ORTHO05D000454 2.2e-11 72.0 72 55.6
Eucgr.B00506 Eucalyptus grandis HOM05D000618 ORTHO05D000454 3.8e-11 71.2 64 57.8
TWI81G0744 Tripterygium wilfordii HOM05D000618 ORTHO05D000454 3.8e-11 71.2 73 53.4
vmacro17541 Vaccinium macrocarpon HOM05D000618 ORTHO05D000454 6.4e-11 70.5 72 51.4
Duzib068G1252 Durio zibethinus HOM05D000618 ORTHO05D000454 1.1e-10 69.7 78 51.3
Ciclev10021492m.g Citrus clementina HOM05D000618 ORTHO05D000454 1.4e-10 69.3 72 52.8
CSS0049542 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 1.9e-10 68.9 73 53.4
Manes.06G092200 Manihot esculenta HOM05D000618 ORTHO05D000454 1.9e-10 68.9 62 58.1
Rhsim08G0154800 Rhododendron simsii HOM05D000618 ORTHO05D000454 2.4e-10 68.6 71 53.5
Dinv16648 Davidia involucrata HOM05D000558 ORTHO05D003119 3.2e-10 68.2 51 66.7
TWI60G0555 Tripterygium wilfordii HOM05D000618 ORTHO05D000454 3.2e-10 68.2 73 49.3
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 4.1e-10 67.8 56 60.7
Cpa.g.sc111.9 Carica papaya HOM05D000618 ORTHO05D000454 5.4e-10 67.4 63 57.1
CiPaw.11G044700 Carya illinoinensis HOM05D000618 ORTHO05D000454 7.1e-10 67.0 74 51.4
Thecc.03G087700 Theobroma cacao HOM05D000618 ORTHO05D000454 7.1e-10 67.0 72 55.6
Prupe.5G193700 Prunus persica HOM05D000618 ORTHO05D000454 9.2e-10 66.6 72 50.0
CSS0008186 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 1.6e-09 65.9 72 50.0
CSS0041018 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 1.6e-09 65.9 72 50.0
MD06G1193400 Malus domestica HOM05D000618 ORTHO05D000454 1.6e-09 65.9 72 50.0
BcaB07g29838 Brassica carinata HOM05D000618 ORTHO05D000454 2.7e-09 65.1 64 53.1
QL10p017026 Quercus lobata HOM05D000618 ORTHO05D000454 3.5e-09 64.7 65 55.4
THA.LOC104821422 Tarenaya hassleriana HOM05D000618 ORTHO05D000454 3.5e-09 64.7 52 59.6
ClCG04G012230 Citrullus lanatus HOM05D000618 ORTHO05D000454 7.8e-09 63.5 72 50.0
MELO3C001985.2 Cucumis melo HOM05D000618 ORTHO05D000454 7.8e-09 63.5 72 50.0
CsaV3_1G005520 Cucumis sativus L. HOM05D000618 ORTHO05D000454 7.8e-09 63.5 72 50.0
ECA246G2097 Erigeron canadensis HOM05D000618 ORTHO05D000454 1.0e-08 63.2 50 62.0
BolC2t12277H Brassica oleracea HOM05D000618 ORTHO05D000454 1.3e-08 62.8 65 47.7
Cfa018941 Carpinus fangiana HOM05D000618 ORTHO05D000454 1.3e-08 62.8 73 52.1
Hma1.2p1_0735F.1_g210700 Hydrangea macrophylla HOM05D000618 ORTHO05D000454 1.3e-08 62.8 72 48.6
BcaC03g18150 Brassica carinata HOM05D000618 ORTHO05D000454 1.7e-08 62.4 65 47.7
FAN08G3388 Fragaria x ananassa HOM05D000618 ORTHO05D000454 1.7e-08 62.4 52 59.6
Actinidia34999 Actinidia chinensis HOM05D000618 ORTHO05D000454 3.0e-08 61.6 72 50.0
AL8G39350 Arabidopsis lyrata HOM05D000618 ORTHO05D000454 3.9e-08 61.2 46 58.7
AT5G62460 Arabidopsis thaliana HOM05D000618 ORTHO05D000454 3.9e-08 61.2 70 47.1
HanXRQChr05g0156001 Helianthus annuus HOM05D000618 ORTHO05D000454 3.9e-08 61.2 49 61.2
MD14G1200500 Malus domestica HOM05D000618 ORTHO05D000454 5.1e-08 60.8 73 46.6
Sp2g25640 Schrenkiella parvula HOM05D000618 ORTHO05D000454 5.1e-08 60.8 50 58.0
C02p62190 Brassica napus HOM05D000618 ORTHO05D000454 6.6e-08 60.5 62 48.4
COL.COLO4_09291 Corchorus olitorius HOM05D000618 ORTHO05D000454 6.6e-08 60.5 54 59.3
Oeu002101.1 Olea europaea HOM05D000618 ORTHO05D000454 6.6e-08 60.5 72 44.4
MBI02_g08836_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 8.7e-08 60.1 68 48.5
Sc04g0002650 Simmondsia chinensis HOM05D000618 ORTHO05D000454 8.7e-08 60.1 71 45.1
PGSC0003DMG400019512 Solanum tuberosum HOM05D000618 ORTHO05D000454 8.7e-08 60.1 73 46.6
HPP92_011248 Vanilla planifolia HOM05D000618 ORTHO05D000454 8.7e-08 60.1 42 69.0
HPP92_016796 Vanilla planifolia HOM05D000618 ORTHO05D000454 8.7e-08 60.1 62 51.6
ATR0564G463 Amborella trichopoda HOM05D000618 ORTHO05D000454 1.1e-07 59.7 66 43.9
Haze_12010 Corylus avellana HOM05D000618 ORTHO05D000454 1.1e-07 59.7 65 55.4
Thhalv10004664m.g Eutrema salsugineum HOM05D000618 ORTHO05D000454 1.1e-07 59.7 45 57.8
RcHm_v2.0_Chr7g0181451 Rosa chinensis HOM05D000618 ORTHO05D000454 1.1e-07 59.7 73 46.6
Aa31LG4G16340 Aethionema arabicum HOM05D000618 ORTHO05D000454 1.5e-07 59.3 46 63.0
Ah.02g113520 Amaranthus hybridus HOM05D000618 ORTHO05D000454 1.5e-07 59.3 48 60.4
CANSAT64G2282 Cannabis sativa HOM05D000618 ORTHO05D000454 1.5e-07 59.3 61 49.2
CDE08G0483 Ceratophyllum demersum HOM05D000618 ORTHO05D000454 1.5e-07 59.3 67 50.7
Ah.11g048390 Amaranthus hybridus HOM05D024303 ORTHO05D010465 1.9e-07 58.9 48 58.3
EL10Ac5g11020 Beta vulgaris HOM05D000618 ORTHO05D000454 1.9e-07 58.9 48 58.3
Haze_07325 Corylus avellana HOM05D000618 ORTHO05D000454 1.9e-07 58.9 71 50.7
HPP92_016828 Vanilla planifolia HOM05D000618 ORTHO05D000454 1.9e-07 58.9 42 66.7
CiPaw.06G085200 Carya illinoinensis HOM05D000618 ORTHO05D000454 2.5e-07 58.5 64 53.1
CiPaw.12G013200 Carya illinoinensis HOM05D000618 ORTHO05D000454 2.5e-07 58.5 73 49.3
Lsat_1_v5_gn_1_12921 Lactuca sativa HOM05D000618 ORTHO05D000454 2.5e-07 58.5 68 48.5
Rhsim12G0156200 Rhododendron simsii HOM05D000618 ORTHO05D000454 2.5e-07 58.5 48 60.4
THA.LOC104818257 Tarenaya hassleriana HOM05D000618 ORTHO05D000454 2.5e-07 58.5 67 43.3
Carub.0008s2313 Capsella rubella HOM05D000618 ORTHO05D000454 3.3e-07 58.2 66 43.9
Dinv34154 Davidia involucrata HOM05D000618 ORTHO05D000454 3.3e-07 58.2 42 69.0
Duzib248G1097 Durio zibethinus HOM05D000618 ORTHO05D000454 3.3e-07 58.2 44 65.9
BcaB02g09649 Brassica carinata HOM05D000618 ORTHO05D000454 4.3e-07 57.8 59 50.8
DCAR_016557 Daucus carota HOM05D000618 ORTHO05D000454 4.3e-07 57.8 72 43.1
FvH4_5g14930 Fragaria vesca HOM05D000618 ORTHO05D000454 4.3e-07 57.8 48 58.3
FAN18G2626 Fragaria x ananassa HOM05D000618 ORTHO05D000454 4.3e-07 57.8 48 58.3
FAN13G1704 Fragaria x ananassa HOM05D000618 ORTHO05D000454 5.6e-07 57.4 48 58.3
Manes.14G078200 Manihot esculenta HOM05D000618 ORTHO05D000454 5.6e-07 57.4 72 44.4
Sed0027104 Sechium edule HOM05D000618 ORTHO05D000454 5.6e-07 57.4 72 48.6
Aqoxy3G00637 Aquilegia oxysepala HOM05D000618 ORTHO05D000454 7.3e-07 57.0 71 45.1
A02p42320 Brassica napus HOM05D000618 ORTHO05D000454 7.3e-07 57.0 63 50.8
BraA02t09161Z Brassica rapa HOM05D000618 ORTHO05D000454 7.3e-07 57.0 63 50.8
BraA06t25866Z Brassica rapa HOM05D000618 ORTHO05D000454 7.3e-07 57.0 52 59.6
Lj9A464T87 Lonicera japonica HOM05D000618 ORTHO05D000454 7.3e-07 57.0 45 60.0
Sopen06g027070 Solanum pennellii HOM05D000618 ORTHO05D000454 7.3e-07 57.0 63 44.4
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 7.3e-07 57.0 61 47.5
A06p29170 Brassica napus HOM05D000618 ORTHO05D000454 9.6e-07 56.6 52 57.7
ClCG11G007350 Citrullus lanatus HOM05D000618 ORTHO05D000454 9.6e-07 56.6 48 58.3
Oeu047296.2 Olea europaea HOM05D000618 ORTHO05D000454 9.6e-07 56.6 72 43.1
Peaxi162Scf00274g00627 Petunia axillaris HOM05D000618 ORTHO05D000454 9.6e-07 56.6 72 43.1
Hund02649 Selenicereus undatus HOM05D000618 ORTHO05D000454 9.6e-07 56.6 48 56.2
TPR.G39179 Trifolium pratense HOM05D000618 ORTHO05D000454 9.6e-07 56.6 42 61.9
BcaC01g02472 Brassica carinata HOM05D000618 ORTHO05D000454 1.2e-06 56.2 52 57.7
C03p64420 Brassica napus HOM05D000618 ORTHO05D000454 1.2e-06 56.2 52 57.7
PGSC0003DMG400033082 Solanum tuberosum HOM05D000618 ORTHO05D000454 1.2e-06 56.2 63 44.4
THA.LOC104808720 Tarenaya hassleriana HOM05D000618 ORTHO05D000454 1.2e-06 56.2 61 50.8
BolC3t18697H Brassica oleracea HOM05D000618 ORTHO05D000454 1.6e-06 55.8 52 57.7
PGR083G0801 Punica granatum HOM05D000618 ORTHO05D000454 1.6e-06 55.8 79 44.3
Aqoxy3G03383 Aquilegia oxysepala HOM05D000618 ORTHO05D000454 2.1e-06 55.5 42 64.3
Aqoxy3G03386 Aquilegia oxysepala HOM05D000618 ORTHO05D000454 2.1e-06 55.5 42 64.3
CDE06G0975 Ceratophyllum demersum HOM05D000618 ORTHO05D000454 2.1e-06 55.5 67 49.3
Cc00_g23100 Coffea canephora HOM05D000618 ORTHO05D000454 2.1e-06 55.5 48 58.3
PSO017G2728 Papaver somniferum HOM05D000618 ORTHO05D000454 2.1e-06 55.5 45 60.0
PSO478G4145 Papaver somniferum HOM05D000618 ORTHO05D000454 2.1e-06 55.5 45 60.0
Solyc06g069780.4 Solanum lycopersicum HOM05D000618 ORTHO05D000454 2.1e-06 55.5 60 45.0
AT3G47550 Arabidopsis thaliana HOM05D000618 ORTHO05D000454 2.8e-06 55.1 41 65.9
Gohir.D12G168100 Gossypium hirsutum HOM05D000618 ORTHO05D000454 2.8e-06 55.1 47 59.6
Lj2g0010702 Lotus japonicus HOM05D000618 ORTHO05D000454 2.8e-06 55.1 55 54.5
PGR044G1492 Punica granatum HOM05D000618 ORTHO05D000454 2.8e-06 55.1 72 47.2
CSS0007034 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 3.6e-06 54.7 66 45.5
CAN.G837.19 Capsicum annuum HOM05D000618 ORTHO05D000454 3.6e-06 54.7 72 43.1
Duzib268G1471 Durio zibethinus HOM05D000618 ORTHO05D000454 3.6e-06 54.7 35 74.3
Nitab4.5_0006000g0110 Nicotiana tabacum HOM05D000618 ORTHO05D000454 3.6e-06 54.7 72 43.1
arahy.Tifrunner.gnm1.ann1.DWF5LN Arachis hypogaea HOM05D000618 ORTHO05D000454 4.7e-06 54.3 46 60.9
Carub.0005s1363 Capsella rubella HOM05D000618 ORTHO05D000454 4.7e-06 54.3 41 65.9
Hma1.2p1_0265F.1_g106790 Hydrangea macrophylla HOM05D000618 ORTHO05D000454 4.7e-06 54.3 39 61.5
Medtr5g040650 Medicago truncatula HOM05D000618 ORTHO05D000454 4.7e-06 54.3 38 65.8
Sopen03g035020 Solanum pennellii HOM05D000618 ORTHO05D000454 4.7e-06 54.3 72 44.4
C03p71730 Brassica napus HOM05D000618 ORTHO05D000454 6.2e-06 53.9 68 50.0
CARHR156180 Cardamine hirsuta HOM05D000618 ORTHO05D000454 6.2e-06 53.9 50 58.0
ECA234G4419 Erigeron canadensis HOM05D000558 ORTHO05D003119 6.2e-06 53.9 65 49.2
Gohir.A13G074700 Gossypium hirsutum HOM05D000618 ORTHO05D000454 6.2e-06 53.9 49 57.1
Gohir.D13G074900 Gossypium hirsutum HOM05D000618 ORTHO05D000454 6.2e-06 53.9 49 57.1
Gorai.013G085600 Gossypium raimondii HOM05D000618 ORTHO05D000454 6.2e-06 53.9 49 57.1
Nitab4.5_0001128g0130 Nicotiana tabacum HOM05D000618 ORTHO05D000454 6.2e-06 53.9 72 43.1
Sed0011815 Sechium edule HOM05D000618 ORTHO05D000454 6.2e-06 53.9 48 60.4
Solyc03g116030.4 Solanum lycopersicum HOM05D000618 ORTHO05D000454 6.2e-06 53.9 72 44.4
A06p27230 Brassica napus HOM05D000618 ORTHO05D000454 8.1e-06 53.5 52 57.7
BraA06t25664Z Brassica rapa HOM05D000618 ORTHO05D000454 8.1e-06 53.5 52 57.7
Gohir.A12G165000 Gossypium hirsutum HOM05D000618 ORTHO05D000454 8.1e-06 53.5 35 71.4
Psat2g119880 Pisum sativum HOM05D000618 ORTHO05D000454 8.1e-06 53.5 41 63.4
Sp5g14330 Schrenkiella parvula HOM05D000618 ORTHO05D000454 8.1e-06 53.5 63 49.2


User provided reference genes

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