Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 0.0e+00 1323.5 662 100.0
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1151.0 622 91.6
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1107.4 625 88.6
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1091.3 624 86.1
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1090.5 623 87.0
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1089.7 633 85.8
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1087.4 622 87.1
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1087.4 625 85.8
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1085.9 623 86.0
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1084.3 625 85.1
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1080.5 624 85.7
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1077.4 628 85.0
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1077.0 623 84.9
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1077.0 624 85.3
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1075.8 624 85.3
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1075.8 622 85.7
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1075.1 628 84.9
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 9.1e-312 1073.2 624 84.8
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 1.4e-311 1072.4 622 85.5
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 1.4e-311 1072.4 622 84.7
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 2.3e-311 1071.6 624 85.4
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 5.4e-311 1070.5 622 86.3
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 5.4e-311 1070.5 622 84.9
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 1.5e-310 1068.9 622 85.0
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 1.5e-310 1068.9 623 86.0
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 2.0e-310 1068.5 622 84.9
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 3.4e-310 1067.8 678 80.7
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 4.5e-310 1067.4 625 84.8
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 1.3e-309 1065.8 622 85.9
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 1.3e-309 1065.8 623 85.4
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 1.3e-309 1065.8 622 84.7
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 2.9e-309 1064.7 624 85.6
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 6.5e-309 1063.5 624 84.3
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 8.4e-309 1063.1 626 84.7
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 8.4e-309 1063.1 626 84.0
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 1.1e-308 1062.8 623 84.9
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 1.4e-308 1062.4 623 84.4
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.4e-308 1062.4 624 85.3
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 1.9e-308 1062.0 624 84.6
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 3.2e-308 1061.2 623 84.1
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 7.1e-308 1060.1 622 83.9
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 1.2e-307 1059.3 622 84.6
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 1.6e-307 1058.9 622 83.8
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 2.7e-307 1058.1 626 83.9
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 2.7e-307 1058.1 624 83.8
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 4.6e-307 1057.4 622 84.6
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 1.0e-306 1056.2 623 83.8
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 3.0e-306 1054.7 623 83.8
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 3.9e-306 1054.3 654 80.9
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 3.9e-306 1054.3 622 83.3
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 5.1e-306 1053.9 625 82.4
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 6.7e-306 1053.5 615 84.4
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 1.1e-305 1052.7 622 83.9
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 1.9e-305 1052.0 624 84.3
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 1.9e-305 1052.0 622 83.4
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 1.9e-305 1052.0 623 83.5
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 2.5e-305 1051.6 623 84.6
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 2.5e-305 1051.6 623 84.4
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 2.5e-305 1051.6 622 83.6
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 2.5e-305 1051.6 622 83.4
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 3.3e-305 1051.2 623 83.3
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 5.7e-305 1050.4 623 83.8
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 9.7e-305 1049.7 622 84.1
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 6.3e-304 1047.0 623 83.8
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 1.4e-303 1045.8 588 86.7
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 4.1e-303 1044.3 623 83.6
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.2e-302 1042.7 622 82.6
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.2e-302 1042.7 623 83.6
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 2.0e-302 1042.0 624 82.4
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 2.0e-302 1042.0 623 82.7
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 5.9e-302 1040.4 624 82.9
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 1.3e-301 1039.3 621 82.9
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 1.7e-301 1038.9 624 82.5
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 2.2e-301 1038.5 623 82.3
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 4.2e-300 1034.2 622 82.8
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 4.2e-300 1034.2 619 82.4
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 5.5e-300 1033.9 594 85.5
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 9.3e-300 1033.1 622 81.7
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 1.2e-299 1032.7 623 81.9
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 2.1e-299 1031.9 570 87.9
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 1.0e-298 1029.6 622 82.8
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.3e-298 1029.2 720 74.0
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 1.3e-298 1029.2 622 80.5
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 2.3e-298 1028.5 622 81.4
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 6.7e-298 1026.9 622 80.5
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 8.8e-298 1026.5 623 81.1
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 1.5e-297 1025.8 622 82.3
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 4.3e-297 1024.2 624 80.9
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 4.3e-297 1024.2 622 80.2
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 5.7e-297 1023.8 624 81.1
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 9.7e-297 1023.1 656 77.6
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 1.3e-296 1022.7 624 80.9
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 1.7e-296 1022.3 624 80.9
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 1.7e-296 1022.3 622 82.2
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 2.8e-296 1021.5 624 80.9
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 4.8e-296 1020.8 622 80.5
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 6.3e-296 1020.4 617 82.7
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 1.8e-295 1018.8 592 84.6
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 3.1e-295 1018.1 624 80.6
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 3.1e-295 1018.1 624 80.6
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 4.1e-295 1017.7 617 82.3
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 1.5e-294 1015.8 615 82.6
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 3.2e-292 1008.1 628 80.3
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.2e-291 1006.1 623 80.6
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 2.1e-291 1005.4 655 76.2
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 1.4e-287 992.6 645 76.6
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 2.9e-285 984.9 528 89.6
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 6.5e-285 983.8 622 79.3
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 2.5e-284 981.9 528 89.6
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 7.2e-284 980.3 528 89.4
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 9.7e-281 969.9 623 78.5
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 3.1e-279 964.9 623 77.4
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 5.2e-274 947.6 629 76.6
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 6.7e-274 947.2 625 75.8
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 2.8e-272 941.8 528 88.4
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 3.7e-272 941.4 932 57.3
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 7.2e-268 927.2 623 77.2
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 2.1e-251 872.5 625 74.4
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 4.3e-244 848.2 548 72.4
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 4.4e-241 838.2 597 68.0
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.9e-239 832.8 593 68.6
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 7.0e-239 830.9 546 72.9
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 7.0e-239 830.9 546 72.9
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 6.0e-238 827.8 546 72.5
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 2.8e-235 818.9 596 67.4
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 5.2e-234 814.7 531 76.5
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 2.7e-230 802.4 531 75.9
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 8.1e-211 737.6 549 63.9
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 7.6e-209 731.1 639 63.8
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.3e-195 687.2 551 59.7
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 7.1e-191 671.4 569 59.9
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 5.7e-180 635.2 551 58.4
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 4.7e-166 589.0 546 53.5
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 4.7e-158 562.4 326 87.1
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.3e-155 554.3 305 86.9
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 7.7e-145 518.5 581 48.2
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 3.4e-140 503.1 297 79.8
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 2.8e-139 500.0 305 83.3
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 2.0e-132 477.2 301 79.4
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 1.7e-104 384.4 225 81.8
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 1.6e-102 377.9 219 85.4
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 6.9e-101 372.5 241 76.3
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 5.3e-85 319.7 229 73.8
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 1.1e-79 302.0 190 76.8
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 7.2e-66 256.1 165 73.9
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 9.4e-66 255.8 125 96.8
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 3.9e-64 250.4 398 45.0
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 7.4e-63 246.1 175 71.4
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 3.1e-61 240.7 260 53.8
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 1.1e-58 232.3 113 96.5
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 7.7e-52 209.5 126 79.4
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 1.8e-45 188.3 145 71.0
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 9.1e-45 186.0 117 76.9
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.0e-44 184.9 169 60.4
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 7.2e-42 176.4 169 58.0
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.4e-40 172.2 158 58.9
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 4.4e-39 167.2 242 39.7
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 2.8e-38 164.5 122 67.2
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 3.8e-35 154.1 92 78.3
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.5e-31 142.1 115 67.0
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 2.8e-30 137.9 83 81.9
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 5.4e-29 133.7 105 62.9
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 9.5e-26 122.9 61 88.5
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 2.8e-25 121.3 75 77.3
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 3.0e-24 117.9 99 64.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 7.5e-23 113.2 221 30.3
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 7.8e-20 103.2 145 49.7
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 2.0e-15 88.6 56 76.8
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.3e-14 85.9 49 75.5
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.0e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 2.3e-11 75.1 42 88.1
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 3.3e-10 71.2 38 89.5


User provided reference genes

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