Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24375 Nelumbo nucifera HOM05D000594 ORTHO05D007877 4.0e-37 157.5 77 100.0
Nn1g02443 Nelumbo nucifera HOM05D000594 ORTHO05D007877 1.0e-27 126.3 68 89.7
Nn2g11414 Nelumbo nucifera HOM05D000594 ORTHO05D007877 1.8e-21 105.5 53 94.3
Nn2g13647 Nelumbo nucifera HOM05D000594 ORTHO05D007877 2.5e-18 95.1 53 83.0
TAR633G0889 Trochodendron aralioides HOM05D000594 ORTHO05D007877 2.3e-16 88.6 53 79.2
Potri.001G249900 Populus trichocarpa HOM05D000594 ORTHO05D007877 8.7e-16 86.7 55 76.4
TAR623G1278 Trochodendron aralioides HOM05D000594 ORTHO05D007877 8.7e-16 86.7 53 81.1
Potri.009G043900 Populus trichocarpa HOM05D000594 ORTHO05D007877 1.1e-15 86.3 57 75.4
Sabra09G0031400 Salix brachista HOM05D000594 ORTHO05D007877 3.3e-15 84.7 55 74.5
CANSAT54G1462 Cannabis sativa HOM05D000594 ORTHO05D007877 7.4e-15 83.6 56 73.2
Haze_24269 Corylus avellana HOM05D000594 ORTHO05D007877 7.4e-15 83.6 54 72.2
Ciclev10028631m.g Citrus clementina HOM05D000594 ORTHO05D007877 9.7e-15 83.2 56 69.6
Gohir.A05G089400 Gossypium hirsutum HOM05D000594 ORTHO05D007877 1.3e-14 82.8 55 69.1
Gohir.D05G090300 Gossypium hirsutum HOM05D000594 ORTHO05D007877 1.3e-14 82.8 55 69.1
Gorai.009G092800 Gossypium raimondii HOM05D000594 ORTHO05D007877 1.3e-14 82.8 55 69.1
Cfa011666 Carpinus fangiana HOM05D000594 ORTHO05D007877 1.6e-14 82.4 54 70.4
Duzib168G1365 Durio zibethinus HOM05D000594 ORTHO05D007877 1.6e-14 82.4 55 72.7
QL01p037472 Quercus lobata HOM05D000594 ORTHO05D007877 1.6e-14 82.4 56 69.6
Ciclev10024441m.g Citrus clementina HOM05D000594 ORTHO05D007877 2.2e-14 82.0 56 69.6
Aa31LG5G6820 Aethionema arabicum HOM05D000594 ORTHO05D007877 2.8e-14 81.6 56 64.3
Gohir.A07G103200 Gossypium hirsutum HOM05D000594 ORTHO05D007877 2.8e-14 81.6 54 68.5
Gohir.D07G107100 Gossypium hirsutum HOM05D000594 ORTHO05D007877 2.8e-14 81.6 54 68.5
Gorai.001G115200 Gossypium raimondii HOM05D000594 ORTHO05D007877 2.8e-14 81.6 54 68.5
THA.LOC104800723 Tarenaya hassleriana HOM05D000594 ORTHO05D007877 2.8e-14 81.6 58 65.5
Ciclev10003942m.g Citrus clementina HOM05D000594 ORTHO05D007877 3.7e-14 81.3 56 67.9
Duzib170G0157 Durio zibethinus HOM05D000594 ORTHO05D007877 3.7e-14 81.3 55 69.1
CSS0048275 Camellia sinensis var. sinensis HOM05D000594 ORTHO05D007877 4.8e-14 80.9 52 71.2
MELO3C025864.2 Cucumis melo HOM05D000594 ORTHO05D007877 4.8e-14 80.9 52 71.2
Dinv28623 Davidia involucrata HOM05D000594 ORTHO05D007877 4.8e-14 80.9 52 69.2
Manes.02G121000 Manihot esculenta HOM05D000594 ORTHO05D007877 4.8e-14 80.9 54 68.5
Phvul.006G064800 Phaseolus vulgaris HOM05D000594 ORTHO05D007877 4.8e-14 80.9 56 64.3
PGR119G2071 Punica granatum HOM05D000594 ORTHO05D007877 4.8e-14 80.9 52 69.2
Thecc.09G304600 Theobroma cacao HOM05D000594 ORTHO05D007877 4.8e-14 80.9 55 67.3
CiPaw.13G080100 Carya illinoinensis HOM05D000594 ORTHO05D007877 8.2e-14 80.1 55 69.1
Duzib150G0582 Durio zibethinus HOM05D000594 ORTHO05D007877 8.2e-14 80.1 55 67.3
Thhalv10016804m.g Eutrema salsugineum HOM05D000594 ORTHO05D007877 8.2e-14 80.1 58 62.1
VMungo0540G1003 Vigna mungo HOM05D000594 ORTHO05D007877 8.2e-14 80.1 56 64.3
Dinv14459 Davidia involucrata HOM05D000594 ORTHO05D007877 1.1e-13 79.7 56 67.9
Hma1.2p1_0227F.1_g096370 Hydrangea macrophylla HOM05D000594 ORTHO05D007877 1.1e-13 79.7 53 66.0
COL.COLO4_19116 Corchorus olitorius HOM05D000594 ORTHO05D007877 1.4e-13 79.3 48 72.9
FvH4_3g38290 Fragaria vesca HOM05D000594 ORTHO05D007877 1.4e-13 79.3 55 70.9
FAN11G0313 Fragaria x ananassa HOM05D000594 ORTHO05D007877 1.4e-13 79.3 55 70.9
FAN21G1685 Fragaria x ananassa HOM05D000594 ORTHO05D007877 1.4e-13 79.3 55 70.9
FAN25G3272 Fragaria x ananassa HOM05D000594 ORTHO05D007877 1.4e-13 79.3 55 70.9
Manes.01G163500 Manihot esculenta HOM05D000594 ORTHO05D007877 1.4e-13 79.3 56 66.1
A04p22580 Brassica napus HOM05D000594 ORTHO05D007877 1.8e-13 79.0 58 63.8
BraA04t17803Z Brassica rapa HOM05D000594 ORTHO05D007877 1.8e-13 79.0 58 63.8
ClCG02G019660 Citrullus lanatus HOM05D000594 ORTHO05D007877 1.8e-13 79.0 45 77.8
ECA247G1924 Erigeron canadensis HOM05D000594 ORTHO05D007877 1.8e-13 79.0 53 66.0
MD11G1079200 Malus domestica HOM05D000594 ORTHO05D007877 2.4e-13 78.6 69 58.0
Medtr3g463270 Medicago truncatula HOM05D000594 ORTHO05D007877 2.4e-13 78.6 55 63.6
Sp4g12380 Schrenkiella parvula HOM05D000594 ORTHO05D007877 2.4e-13 78.6 57 61.4
FAN16G1894 Fragaria x ananassa HOM05D000594 ORTHO05D007877 3.1e-13 78.2 52 73.1
RcHm_v2.0_Chr5g0068821 Rosa chinensis HOM05D000594 ORTHO05D007877 3.1e-13 78.2 55 69.1
Sed0026727 Sechium edule HOM05D000594 ORTHO05D007877 3.1e-13 78.2 44 79.5
TWI79G0920 Tripterygium wilfordii HOM05D000594 ORTHO05D007877 3.1e-13 78.2 56 67.9
Aqoxy4G02645 Aquilegia oxysepala HOM05D000594 ORTHO05D007877 4.1e-13 77.8 55 67.3
AT2G29660 Arabidopsis thaliana HOM05D000594 ORTHO05D007877 4.1e-13 77.8 57 61.4
MSTRG.26405 Avicennia marina HOM05D000594 ORTHO05D007877 4.1e-13 77.8 50 68.0
BcaC02g08071 Brassica carinata HOM05D000594 ORTHO05D007877 4.1e-13 77.8 56 62.5
C04p58750 Brassica napus HOM05D000594 ORTHO05D007877 4.1e-13 77.8 56 62.5
Carub.0004s1076 Capsella rubella HOM05D000594 ORTHO05D007877 4.1e-13 77.8 58 62.1
DCAR_005894 Daucus carota HOM05D000594 ORTHO05D007877 4.1e-13 77.8 53 64.2
BcaC02g11051 Brassica carinata HOM05D000594 ORTHO05D007877 5.3e-13 77.4 57 59.6
A05p15720 Brassica napus HOM05D000594 ORTHO05D007877 5.3e-13 77.4 57 59.6
C04p21140 Brassica napus HOM05D000594 ORTHO05D007877 5.3e-13 77.4 57 59.6
BolC4t23639H Brassica oleracea HOM05D000594 ORTHO05D007877 5.3e-13 77.4 57 59.6
BraA05t20486Z Brassica rapa HOM05D000594 ORTHO05D007877 5.3e-13 77.4 57 59.6
CARHR122990 Cardamine hirsuta HOM05D000594 ORTHO05D007877 5.3e-13 77.4 56 58.9
Glyma.18G066100 Glycine max HOM05D000594 ORTHO05D007877 5.3e-13 77.4 55 63.6
vmacro02983 Vaccinium macrocarpon HOM05D000594 ORTHO05D007877 5.3e-13 77.4 52 65.4
CsaV3_6G016340 Cucumis sativus L. HOM05D000594 ORTHO05D007877 6.9e-13 77.0 45 73.3
Lsat_1_v5_gn_5_171660 Lactuca sativa HOM05D000594 ORTHO05D007877 6.9e-13 77.0 51 66.7
MD03G1073300 Malus domestica HOM05D000594 ORTHO05D007877 6.9e-13 77.0 69 56.5
AL4G24420 Arabidopsis lyrata HOM05D000594 ORTHO05D007877 9.1e-13 76.6 60 60.0
BcaB02g10274 Brassica carinata HOM05D000594 ORTHO05D007877 9.1e-13 76.6 57 59.6
BcaB06g28322 Brassica carinata HOM05D000594 ORTHO05D007877 9.1e-13 76.6 57 61.4
Lsat_1_v5_gn_9_20121 Lactuca sativa HOM05D000594 ORTHO05D007877 9.1e-13 76.6 53 64.2
Lj1A141T55 Lonicera japonica HOM05D000594 ORTHO05D007877 9.1e-13 76.6 53 66.0
Psat5g161200 Pisum sativum HOM05D000594 ORTHO05D007877 9.1e-13 76.6 51 66.7
Prupe.6G060000 Prunus persica HOM05D000594 ORTHO05D007877 9.1e-13 76.6 69 55.1
Rhsim13G0071500 Rhododendron simsii HOM05D000594 ORTHO05D007877 9.1e-13 76.6 50 70.0
Sabra16G0151900 Salix brachista HOM05D000594 ORTHO05D007877 9.1e-13 76.6 45 82.2
BolC4t27393H Brassica oleracea HOM05D000594 ORTHO05D007877 1.2e-12 76.3 58 62.1
Lalb_Chr18g0050821 Lupinus albus HOM05D000594 ORTHO05D007877 1.2e-12 76.3 45 68.9
Sc12g0000920 Simmondsia chinensis HOM05D000594 ORTHO05D007877 1.2e-12 76.3 50 68.0
Cc01_g14010 Coffea canephora HOM05D000594 ORTHO05D007877 1.5e-12 75.9 56 64.3
Lj6g0006188 Lotus japonicus HOM05D000594 ORTHO05D007877 1.5e-12 75.9 56 62.5
Nitab4.5_0004144g0030 Nicotiana tabacum HOM05D000594 ORTHO05D007877 1.5e-12 75.9 53 67.9
PSO339G0298 Papaver somniferum HOM05D000594 ORTHO05D007877 1.5e-12 75.9 48 66.7
Cpa.g.sc112.46 Carica papaya HOM05D000594 ORTHO05D007877 2.0e-12 75.5 45 68.9
Lalb_Chr15g0082771 Lupinus albus HOM05D000594 ORTHO05D007877 2.0e-12 75.5 52 59.6
GSVIVG01024778001 Vitis vinifera HOM05D000594 ORTHO05D007877 2.6e-12 75.1 45 73.3
arahy.Tifrunner.gnm1.ann1.LXQM1X Arachis hypogaea HOM05D000594 ORTHO05D007877 3.4e-12 74.7 45 71.1
arahy.Tifrunner.gnm1.ann1.RRM2UF Arachis hypogaea HOM05D000594 ORTHO05D007877 3.4e-12 74.7 45 68.9
HanXRQChr08g0229741 Helianthus annuus HOM05D000594 ORTHO05D007877 3.4e-12 74.7 53 62.3
Lj2A1079T34 Lonicera japonica HOM05D000594 ORTHO05D007877 3.4e-12 74.7 53 64.2
Nitab4.5_0000010g0170 Nicotiana tabacum HOM05D000594 ORTHO05D007877 3.4e-12 74.7 53 64.2
CiPaw.14G060600 Carya illinoinensis HOM05D000594 ORTHO05D007877 7.7e-12 73.6 54 68.5
ECA248G3627 Erigeron canadensis HOM05D000594 ORTHO05D007877 1.0e-11 73.2 50 64.0
TWI31G1330 Tripterygium wilfordii HOM05D000594 ORTHO05D007877 1.0e-11 73.2 52 67.3
Eucgr.J01931 Eucalyptus grandis HOM05D000594 ORTHO05D007877 1.7e-11 72.4 55 58.2
AUR62001674 Chenopodium quinoa HOM05D000594 ORTHO05D007877 2.2e-11 72.0 50 64.0
AUR62020107 Chenopodium quinoa HOM05D000594 ORTHO05D007877 2.9e-11 71.6 50 64.0
Oeu019915.1 Olea europaea HOM05D000594 ORTHO05D007877 2.9e-11 71.6 50 64.0
EL10Ac7g16136 Beta vulgaris HOM05D000594 ORTHO05D007877 3.8e-11 71.2 50 64.0
EL10Ac7g16140 Beta vulgaris HOM05D000594 ORTHO05D007877 3.8e-11 71.2 50 64.0
MBI05_g45684_MAGBIO Magnolia biondii HOM05D000594 ORTHO05D007877 5.0e-11 70.9 59 55.9
Peaxi162Scf00540g00616 Petunia axillaris HOM05D000594 ORTHO05D007877 6.5e-11 70.5 53 62.3
Solyc06g076820.1 Solanum lycopersicum HOM05D000594 ORTHO05D007877 6.5e-11 70.5 50 64.0
PSO384G1170 Papaver somniferum HOM05D000594 ORTHO05D007877 8.5e-11 70.1 48 64.6
PGSC0003DMG401030350 Solanum tuberosum HOM05D000594 ORTHO05D007877 8.5e-11 70.1 45 66.7
CAN.G394.112 Capsicum annuum HOM05D000594 ORTHO05D007877 1.4e-10 69.3 50 62.0
MSTRG.6042 Avicennia marina HOM05D000594 ORTHO05D007877 1.9e-10 68.9 50 62.0
Sopen06g033200 Solanum pennellii HOM05D000594 ORTHO05D007877 1.9e-10 68.9 50 64.0
HanXRQChr08g0213941 Helianthus annuus HOM05D000594 ORTHO05D007877 3.2e-10 68.2 45 64.4
Os03g0264600 Oryza sativa ssp. japonica HOM05D000594 ORTHO05D007877 1.6e-09 65.9 58 53.4
SalBow6G6856 Salvia bowleyana HOM05D000594 ORTHO05D007877 1.6e-09 65.9 54 53.7
Zm00001eb011680 Zea mays HOM05D000594 ORTHO05D007877 4.6e-09 64.3 58 50.0
ATR0618G117 Amborella trichopoda HOM05D000594 ORTHO05D007877 2.3e-08 62.0 44 61.4


User provided reference genes

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