Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24340 Nelumbo nucifera HOM05D001602 ORTHO05D001470 6.0e-61 237.3 115 100.0
Nn1g04250 Nelumbo nucifera HOM05D001602 ORTHO05D001470 3.3e-35 151.8 106 77.4
TAR624G1452 Trochodendron aralioides HOM05D001602 ORTHO05D001470 1.9e-30 136.0 106 69.8
PSO541G3055 Papaver somniferum HOM05D001602 ORTHO05D001470 2.5e-30 135.6 106 67.9
PSO675G8974 Papaver somniferum HOM05D001602 ORTHO05D001470 3.2e-30 135.2 106 68.9
Hma1.2p1_0734F.1_g210350 Hydrangea macrophylla HOM05D001602 ORTHO05D001470 6.0e-29 131.0 106 67.0
Aqoxy1G02290 Aquilegia oxysepala HOM05D001602 ORTHO05D001470 7.9e-29 130.6 105 67.6
Aqoxy1G02294 Aquilegia oxysepala HOM05D001602 ORTHO05D001470 7.9e-29 130.6 105 67.6
FAN05G5437 Fragaria x ananassa HOM05D001602 ORTHO05D001470 5.1e-28 127.9 106 62.3
MD03G1234000 Malus domestica HOM05D001602 ORTHO05D001470 5.1e-28 127.9 107 61.7
RcHm_v2.0_Chr0c19g0500101 Rosa chinensis HOM05D001602 ORTHO05D001470 5.1e-28 127.9 106 62.3
Dinv06852 Davidia involucrata HOM05D001602 ORTHO05D001470 8.7e-28 127.1 106 66.0
FvH4_6g26750 Fragaria vesca HOM05D001602 ORTHO05D001470 8.7e-28 127.1 106 62.3
FAN14G4128 Fragaria x ananassa HOM05D001602 ORTHO05D001470 8.7e-28 127.1 106 62.3
Gohir.A03G154400 Gossypium hirsutum HOM05D001602 ORTHO05D001470 2.5e-27 125.6 106 63.2
Gohir.D02G177300 Gossypium hirsutum HOM05D001602 ORTHO05D001470 2.5e-27 125.6 106 63.2
Gorai.005G199000 Gossypium raimondii HOM05D001602 ORTHO05D001470 2.5e-27 125.6 106 63.2
CANSAT64G1522 Cannabis sativa HOM05D001602 ORTHO05D001470 3.3e-27 125.2 106 62.3
Actinidia39331 Actinidia chinensis HOM05D001602 ORTHO05D001470 4.3e-27 124.8 106 63.2
CSS0047535 Camellia sinensis var. sinensis HOM05D001602 ORTHO05D001470 4.3e-27 124.8 106 62.3
Duzib052G0615 Durio zibethinus HOM05D001602 ORTHO05D001470 4.3e-27 124.8 105 64.8
Lalb_Chr14g0367171 Lupinus albus HOM05D001602 ORTHO05D001470 5.7e-27 124.4 106 65.1
Thecc.02G187300 Theobroma cacao HOM05D001602 ORTHO05D001470 5.7e-27 124.4 106 64.2
COL.COLO4_37678 Corchorus olitorius HOM05D001602 ORTHO05D001470 1.3e-26 123.2 106 63.2
TWI59G0871 Tripterygium wilfordii HOM05D001602 ORTHO05D001470 1.3e-26 123.2 106 64.2
ClCG02G010320 Citrullus lanatus HOM05D001602 ORTHO05D001470 2.1e-26 122.5 106 60.4
CsaV3_2G034470 Cucumis sativus L. HOM05D001602 ORTHO05D001470 2.1e-26 122.5 106 60.4
CiPaw.03G182300 Carya illinoinensis HOM05D001602 ORTHO05D001470 2.8e-26 122.1 106 61.3
MELO3C019331.2 Cucumis melo HOM05D001602 ORTHO05D001470 2.8e-26 122.1 106 60.4
FAN02G2936 Fragaria x ananassa HOM05D001602 ORTHO05D001470 2.8e-26 122.1 98 62.2
Lj1A709T37 Lonicera japonica HOM05D001602 ORTHO05D001470 2.8e-26 122.1 106 62.3
Haze_13255 Corylus avellana HOM05D001602 ORTHO05D001470 3.7e-26 121.7 106 62.3
Rhsim04G0071400 Rhododendron simsii HOM05D001602 ORTHO05D001470 3.7e-26 121.7 106 62.3
Ca_17938_v3 Cicer arietinum L. HOM05D001602 ORTHO05D001470 4.8e-26 121.3 106 62.3
DCAR_013041 Daucus carota HOM05D001602 ORTHO05D001470 6.3e-26 120.9 105 61.9
Ciclev10016518m.g Citrus clementina HOM05D001602 ORTHO05D001470 1.8e-25 119.4 106 62.3
Cpa.g.sc83.104 Carica papaya HOM05D001602 ORTHO05D001470 2.4e-25 119.0 106 63.2
Lsat_1_v5_gn_8_136640 Lactuca sativa HOM05D001602 ORTHO05D001470 2.4e-25 119.0 106 60.4
Oeu022441.1 Olea europaea HOM05D001602 ORTHO05D001470 2.4e-25 119.0 106 59.4
Nitab4.5_0000621g0020 Nicotiana tabacum HOM05D001602 ORTHO05D001470 3.1e-25 118.6 106 61.3
Solyc07g053580.3 Solanum lycopersicum HOM05D001602 ORTHO05D001470 3.1e-25 118.6 106 60.4
Sopen07g027530 Solanum pennellii HOM05D001602 ORTHO05D001470 3.1e-25 118.6 106 60.4
PGSC0003DMG400009398 Solanum tuberosum HOM05D001602 ORTHO05D001470 3.1e-25 118.6 106 60.4
Cfa014666 Carpinus fangiana HOM05D001602 ORTHO05D001470 4.1e-25 118.2 106 61.3
HanXRQChr17g0555031 Helianthus annuus HOM05D001602 ORTHO05D001470 4.1e-25 118.2 105 61.0
Glyma.13G293900 Glycine max HOM05D001602 ORTHO05D001470 5.3e-25 117.9 106 62.3
Manes.12G086100 Manihot esculenta HOM05D001602 ORTHO05D001470 9.0e-25 117.1 106 63.2
VMungo1080G1085 Vigna mungo HOM05D001602 ORTHO05D001470 9.0e-25 117.1 106 61.3
Glyma.12G207000 Glycine max HOM05D001602 ORTHO05D001470 1.2e-24 116.7 106 59.4
Medtr2g090740 Medicago truncatula HOM05D001602 ORTHO05D001470 1.2e-24 116.7 106 59.4
Peaxi162Scf00845g00006 Petunia axillaris HOM05D001602 ORTHO05D001470 1.2e-24 116.7 106 58.5
QL08p040515 Quercus lobata HOM05D001602 ORTHO05D001470 1.2e-24 116.7 106 59.4
Sed0021598 Sechium edule HOM05D001602 ORTHO05D001470 2.0e-24 115.9 106 59.4
Sed0023020 Sechium edule HOM05D001602 ORTHO05D001470 2.0e-24 115.9 106 59.4
Atru.chr6.2863 Acer truncatum HOM05D001602 ORTHO05D001470 2.6e-24 115.5 105 61.0
Thhalv10003267m.g Eutrema salsugineum HOM05D001602 ORTHO05D001470 3.4e-24 115.2 106 61.3
arahy.Tifrunner.gnm1.ann1.945Z0P Arachis hypogaea HOM05D001602 ORTHO05D001470 4.5e-24 114.8 106 60.4
Nitab4.5_0005191g0010 Nicotiana tabacum HOM05D001602 ORTHO05D001470 4.5e-24 114.8 106 58.5
SalBow7G4457 Salvia bowleyana HOM05D001602 ORTHO05D001470 4.5e-24 114.8 106 57.5
SpUn0826_0010 Schrenkiella parvula HOM05D001602 ORTHO05D001470 4.5e-24 114.8 106 60.4
Phvul.005G100000 Phaseolus vulgaris HOM05D001602 ORTHO05D001470 5.9e-24 114.4 106 60.4
TPR.G6417 Trifolium pratense HOM05D001602 ORTHO05D001470 5.9e-24 114.4 106 60.4
arahy.Tifrunner.gnm1.ann1.HEJ2LC Arachis hypogaea HOM05D001602 ORTHO05D001470 7.6e-24 114.0 106 59.4
Sabra17G0013200 Salix brachista HOM05D001602 ORTHO05D001470 1.0e-23 113.6 106 61.3
BcaB07g30966 Brassica carinata HOM05D001602 ORTHO05D001470 1.3e-23 113.2 106 60.4
SGA_v2.0_scaffold70G23483 Striga asiatica HOM05D001602 ORTHO05D001470 1.3e-23 113.2 106 58.5
CDE02G2740 Ceratophyllum demersum HOM05D001602 ORTHO05D001470 1.7e-23 112.8 106 59.4
Psat5g273960 Pisum sativum HOM05D001602 ORTHO05D001470 1.7e-23 112.8 106 60.4
Potri.017G017000 Populus trichocarpa HOM05D001602 ORTHO05D001470 1.7e-23 112.8 106 60.4
A09p20940 Brassica napus HOM05D001602 ORTHO05D001470 2.9e-23 112.1 106 60.4
BraA09t37694Z Brassica rapa HOM05D001602 ORTHO05D001470 2.9e-23 112.1 106 60.4
CAN.G1808.4 Capsicum annuum HOM05D001602 ORTHO05D001470 2.9e-23 112.1 106 56.6
PGR042G1519 Punica granatum HOM05D001602 ORTHO05D001470 2.9e-23 112.1 106 62.3
MSTRG.6731 Avicennia marina HOM05D001602 ORTHO05D001470 3.8e-23 111.7 104 54.8
CARHR179100 Cardamine hirsuta HOM05D001602 ORTHO05D001470 3.8e-23 111.7 106 60.4
THA.LOC104801156 Tarenaya hassleriana HOM05D001602 ORTHO05D001470 3.8e-23 111.7 106 60.4
BolC9t55550H Brassica oleracea HOM05D001602 ORTHO05D001470 5.0e-23 111.3 106 60.4
Lj3g0009490 Lotus japonicus HOM05D001602 ORTHO05D001470 5.0e-23 111.3 106 59.4
ECA233G1090 Erigeron canadensis HOM05D000028 ORTHO05D000296 6.5e-23 110.9 106 58.5
Aa31LG5G3070 Aethionema arabicum HOM05D001602 ORTHO05D001470 8.4e-23 110.5 106 58.5
BcaC04g21860 Brassica carinata HOM05D001602 ORTHO05D001470 8.4e-23 110.5 106 59.4
C09p26540 Brassica napus HOM05D001602 ORTHO05D001470 8.4e-23 110.5 106 59.4
MD11G1254400 Malus domestica HOM05D001602 ORTHO05D001470 1.1e-22 110.2 86 65.1
AL8G15850 Arabidopsis lyrata HOM05D001602 ORTHO05D001470 1.4e-22 109.8 105 60.0
AT5G44170 Arabidopsis thaliana HOM05D001602 ORTHO05D001470 1.4e-22 109.8 105 60.0
Cc05_g07780 Coffea canephora HOM05D001602 ORTHO05D001470 3.2e-22 108.6 107 58.9
Hund01012 Selenicereus undatus HOM05D001602 ORTHO05D001470 5.5e-22 107.8 106 54.7
unitig_46.g18246 Utricularia gibba HOM05D001602 ORTHO05D001470 5.5e-22 107.8 105 54.3
Carub.0008s0435 Capsella rubella HOM05D001602 ORTHO05D001470 7.2e-22 107.5 105 58.1
Sc12g0003250 Simmondsia chinensis HOM05D001602 ORTHO05D001470 2.1e-21 105.9 106 55.7
Migut.M00155 Erythranthe guttata HOM05D001602 ORTHO05D001470 3.5e-21 105.1 106 51.9
AUR62036061 Chenopodium quinoa HOM05D001602 ORTHO05D001470 7.9e-21 104.0 106 55.7
EL10Ac9g20821 Beta vulgaris HOM05D001602 ORTHO05D001470 1.3e-20 103.2 106 52.8
MBI06_g45914_MAGBIO Magnolia biondii HOM05D001602 ORTHO05D001470 1.3e-20 103.2 100 56.0
Prupe.4G174700 Prunus persica HOM05D001602 ORTHO05D001470 2.3e-20 102.4 99 57.6
ATR0602G270 Amborella trichopoda HOM05D001602 ORTHO05D001470 6.3e-18 94.4 76 59.2
CSS0029917 Camellia sinensis var. sinensis HOM05D001602 ORTHO05D001470 5.3e-17 91.3 106 53.8
HPP92_023282 Vanilla planifolia HOM05D001602 ORTHO05D001470 5.3e-17 91.3 107 50.5
arahy.Tifrunner.gnm1.ann1.CR36LG Arachis hypogaea HOM05D001602 ORTHO05D001470 1.2e-16 90.1 76 56.6
arahy.Tifrunner.gnm1.ann1.VMR70Y Arachis hypogaea HOM05D001602 ORTHO05D001470 4.5e-16 88.2 76 55.3
Pp3c5_6170 Physcomitrium patens HOM05D001602 ORTHO05D001470 5.9e-16 87.8 80 48.8
CSS0012391 Camellia sinensis var. sinensis HOM05D001602 ORTHO05D001470 1.1e-14 83.6 106 48.1
SMO196G0271 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 1.2e-13 80.1 80 48.8
Cfa014783 Carpinus fangiana HOM05D001602 ORTHO05D001470 6.7e-12 74.3 49 67.3
Zm00001eb295880 Zea mays HOM05D001602 ORTHO05D001470 4.3e-11 71.6 70 55.7
Os05g0564100 Oryza sativa ssp. japonica HOM05D001602 ORTHO05D001470 2.8e-10 68.9 70 54.3
PGR102G2720 Punica granatum HOM05D001602 ORTHO05D001470 5.9e-08 61.2 88 37.5
Mapoly0012s0020 Marchantia polymorpha HOM05D001602 ORTHO05D001470 1.3e-07 60.1 68 44.1
HanXRQChr02g0055611 Helianthus annuus HOM05D001602 ORTHO05D001470 2.9e-07 58.9 97 32.0
CAN.G546.20 Capsicum annuum HOM05D001602 ORTHO05D001470 5.0e-07 58.2 88 35.2
Mapoly0123s0035 Marchantia polymorpha HOM05D001602 ORTHO05D001470 6.5e-07 57.8 84 32.1
SalBow3G3662 Salvia bowleyana HOM05D001602 ORTHO05D001470 6.5e-07 57.8 79 35.4
Thecc.09G069900 Theobroma cacao HOM05D001602 ORTHO05D001470 6.5e-07 57.8 101 31.7
GSVIVG01015742001 Vitis vinifera HOM05D001602 ORTHO05D001470 6.5e-07 57.8 88 36.4
GSVIVG01031494001 Vitis vinifera HOM05D001602 ORTHO05D001470 6.5e-07 57.8 88 36.4
CSS0039176 Camellia sinensis var. sinensis HOM05D001602 ORTHO05D001470 8.5e-07 57.4 84 38.1
ATR0105G012 Amborella trichopoda HOM05D001602 ORTHO05D001470 1.1e-06 57.0 85 31.8
Dinv34729 Davidia involucrata HOM05D001602 ORTHO05D001470 1.1e-06 57.0 88 35.2
Lj1A210T38 Lonicera japonica HOM05D001602 ORTHO05D001470 1.1e-06 57.0 88 36.4
Sc02g0004910 Simmondsia chinensis HOM05D001602 ORTHO05D001470 1.1e-06 57.0 72 36.1
Haze_23729 Corylus avellana HOM05D001602 ORTHO05D001470 1.4e-06 56.6 88 31.8
QL01p015549 Quercus lobata HOM05D001602 ORTHO05D001470 1.4e-06 56.6 84 31.0
Rhsim13G0099500 Rhododendron simsii HOM05D001602 ORTHO05D001470 1.4e-06 56.6 83 38.6
ClCG02G021480 Citrullus lanatus HOM05D001602 ORTHO05D001470 1.9e-06 56.2 88 34.1
ECA233G5032 Erigeron canadensis HOM05D001602 ORTHO05D001470 2.5e-06 55.8 97 29.9
Migut.D02282 Erythranthe guttata HOM05D001602 ORTHO05D001470 2.5e-06 55.8 79 35.4
Sed0025563 Sechium edule HOM05D001602 ORTHO05D001470 2.5e-06 55.8 88 34.1
Cc01_g10470 Coffea canephora HOM05D001602 ORTHO05D001470 3.2e-06 55.5 88 35.2
Duzib187G1899 Durio zibethinus HOM05D001602 ORTHO05D001470 3.2e-06 55.5 88 34.1
RcHm_v2.0_Chr5g0057461 Rosa chinensis HOM05D001602 ORTHO05D001470 3.2e-06 55.5 88 33.0
CsaV3_6G014250 Cucumis sativus L. HOM05D001602 ORTHO05D001470 4.2e-06 55.1 88 34.1
FvH4_3g30920 Fragaria vesca HOM05D001602 ORTHO05D001470 4.2e-06 55.1 88 33.0
Lsat_1_v5_gn_6_44081 Lactuca sativa HOM05D001602 ORTHO05D001470 5.5e-06 54.7 88 35.2
Zm00001eb258970 Zea mays HOM05D001602 ORTHO05D001470 5.5e-06 54.7 100 32.0
AUR62014940 Chenopodium quinoa HOM05D001602 ORTHO05D001470 7.2e-06 54.3 88 34.1
MELO3C026904.2 Cucumis melo HOM05D001602 ORTHO05D001470 7.2e-06 54.3 88 34.1
Manes.04G014600 Manihot esculenta HOM05D001602 ORTHO05D001470 7.2e-06 54.3 88 33.0
Nitab4.5_0000329g0250 Nicotiana tabacum HOM05D001602 ORTHO05D001470 7.2e-06 54.3 84 31.0
Solyc11g068990.3 Solanum lycopersicum HOM05D001602 ORTHO05D001470 7.2e-06 54.3 88 33.0
Sopen11g027700 Solanum pennellii HOM05D001602 ORTHO05D001470 7.2e-06 54.3 88 33.0
PGSC0003DMG400019626 Solanum tuberosum HOM05D001602 ORTHO05D001470 7.2e-06 54.3 88 33.0
VMungo1127G0611 Vigna mungo HOM05D001602 ORTHO05D001470 7.2e-06 54.3 88 33.0
Zm00001eb191340 Zea mays HOM05D001602 ORTHO05D001470 7.2e-06 54.3 100 32.0
FvH4_6g10150 Fragaria vesca HOM05D001602 ORTHO05D001470 9.4e-06 53.9 64 53.1
MD11G1146300 Malus domestica HOM05D001602 ORTHO05D001470 9.4e-06 53.9 88 29.5
Nitab4.5_0005092g0040 Nicotiana tabacum HOM05D001602 ORTHO05D001470 9.4e-06 53.9 84 32.1


User provided reference genes

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