Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24337 Nelumbo nucifera HOM05D000609 ORTHO05D000462 4.4e-49 197.6 97 100.0
Nn1g06634 Nelumbo nucifera HOM05D000609 ORTHO05D000462 3.3e-28 128.3 99 64.6
TAR627G0231 Trochodendron aralioides HOM05D000609 ORTHO05D000462 1.4e-23 112.8 93 58.1
TAR627G0740 Trochodendron aralioides HOM05D000609 ORTHO05D000462 3.2e-23 111.7 93 57.0
CiPaw.03G174500 Carya illinoinensis HOM05D000609 ORTHO05D000462 2.5e-20 102.1 88 55.7
TWI75G1120 Tripterygium wilfordii HOM05D000609 ORTHO05D000462 7.4e-20 100.5 90 52.2
QL08p038189 Quercus lobata HOM05D000609 ORTHO05D000462 9.6e-20 100.1 92 54.3
Potri.013G135600 Populus trichocarpa HOM05D000609 ORTHO05D000462 1.6e-19 99.4 81 59.3
Duzib248G0477 Durio zibethinus HOM05D000609 ORTHO05D000462 2.1e-19 99.0 78 57.7
Manes.12G087500 Manihot esculenta HOM05D000609 ORTHO05D000462 2.8e-19 98.6 93 53.8
Sabra19G0113400 Salix brachista HOM05D000609 ORTHO05D000462 4.8e-19 97.8 93 53.8
Potri.019G102200 Populus trichocarpa HOM05D000609 ORTHO05D000462 6.2e-19 97.4 93 55.9
Sabra13G0114800 Salix brachista HOM05D000609 ORTHO05D000462 2.4e-18 95.5 70 60.0
Dinv12915 Davidia involucrata HOM05D000609 ORTHO05D000462 3.1e-18 95.1 84 53.6
Aqoxy4G01198 Aquilegia oxysepala HOM05D000609 ORTHO05D000462 2.6e-17 92.0 89 49.4
CiPaw.04G124700 Carya illinoinensis HOM05D000609 ORTHO05D000462 2.6e-17 92.0 81 53.1
Duzib132G0836 Durio zibethinus HOM05D000609 ORTHO05D000462 2.6e-17 92.0 75 57.3
Duzib052G0967 Durio zibethinus HOM05D000609 ORTHO05D000462 4.5e-17 91.3 87 50.6
Dinv23667 Davidia involucrata HOM05D000609 ORTHO05D000462 1.0e-16 90.1 86 53.5
Thecc.02G176800 Theobroma cacao HOM05D000609 ORTHO05D000462 1.0e-16 90.1 75 56.0
Manes.13G148300 Manihot esculenta HOM05D000609 ORTHO05D000462 1.7e-16 89.4 81 54.3
TWI18G0869 Tripterygium wilfordii HOM05D000609 ORTHO05D000462 2.9e-16 88.6 87 48.3
ClCG02G017520 Citrullus lanatus HOM05D000609 ORTHO05D000462 3.8e-16 88.2 78 56.4
Eucgr.K00961 Eucalyptus grandis HOM05D000609 ORTHO05D000462 4.9e-16 87.8 76 52.6
CSS0000647 Camellia sinensis var. sinensis HOM05D000609 ORTHO05D000462 6.5e-16 87.4 95 50.5
Rhsim06G0147200 Rhododendron simsii HOM05D000609 ORTHO05D000462 1.9e-15 85.9 93 48.4
Cfa014583 Carpinus fangiana HOM05D000609 ORTHO05D000462 3.2e-15 85.1 81 55.6
COL.COLO4_06984 Corchorus olitorius HOM05D000609 ORTHO05D000462 3.2e-15 85.1 75 56.0
PGR142G3899 Punica granatum HOM05D000609 ORTHO05D000462 4.2e-15 84.7 87 48.3
THA.LOC104814487 Tarenaya hassleriana HOM05D000609 ORTHO05D000462 1.2e-14 83.2 83 50.6
VMungo1080G1501 Vigna mungo HOM05D000609 ORTHO05D000462 2.1e-14 82.4 69 56.5
Prupe.3G157100 Prunus persica HOM05D000609 ORTHO05D000462 4.6e-14 81.3 83 51.8
Ciclev10015144m.g Citrus clementina HOM05D000609 ORTHO05D000462 6.0e-14 80.9 74 50.0
Hma1.2p1_1201F.1_g266770 Hydrangea macrophylla HOM05D000609 ORTHO05D000462 6.0e-14 80.9 78 50.0
MD17G1244300 Malus domestica HOM05D000609 ORTHO05D000462 1.0e-13 80.1 78 47.4
TAR629G2339 Trochodendron aralioides HOM05D000609 ORTHO05D000462 1.3e-13 79.7 61 60.7
Atru.chr6.3013 Acer truncatum HOM05D000609 ORTHO05D000462 2.3e-13 79.0 67 52.2
Glyma.13G298600 Glycine max HOM05D000609 ORTHO05D000462 2.3e-13 79.0 87 48.3
Lalb_Chr14g0366811 Lupinus albus HOM05D000609 ORTHO05D000462 2.3e-13 79.0 97 47.4
Phvul.005G105200 Phaseolus vulgaris HOM05D000609 ORTHO05D000462 2.3e-13 79.0 77 54.5
CsaV3_6G013050 Cucumis sativus L. HOM05D000609 ORTHO05D000462 3.0e-13 78.6 74 51.4
Sed0023479 Sechium edule HOM05D000609 ORTHO05D000462 3.0e-13 78.6 71 56.3
Actinidia11051 Actinidia chinensis HOM05D000609 ORTHO05D000462 3.9e-13 78.2 69 58.0
MELO3C013593.2 Cucumis melo HOM05D000609 ORTHO05D000462 3.9e-13 78.2 56 60.7
Gorai.002G018000 Gossypium raimondii HOM05D000609 ORTHO05D000462 3.9e-13 78.2 74 50.0
DCAR_021235 Daucus carota HOM05D000609 ORTHO05D000462 5.1e-13 77.8 90 41.1
MSTRG.12310 Avicennia marina HOM05D000609 ORTHO05D000462 6.7e-13 77.4 94 44.7
CsaV3_7G004340 Cucumis sativus L. HOM05D000609 ORTHO05D000462 6.7e-13 77.4 71 49.3
Gohir.D01G016300 Gossypium hirsutum HOM05D000609 ORTHO05D000462 1.1e-12 76.6 53 60.4
Glyma.12G110400 Glycine max HOM05D000609 ORTHO05D000462 1.5e-12 76.3 62 58.1
Glyma.12G203100 Glycine max HOM05D000609 ORTHO05D000462 1.5e-12 76.3 81 49.4
Gohir.A01G016300 Gossypium hirsutum HOM05D000609 ORTHO05D000462 1.5e-12 76.3 53 60.4
MELO3C018744.2 Cucumis melo HOM05D000609 ORTHO05D000462 1.9e-12 75.9 71 47.9
Sed0025633 Sechium edule HOM05D000609 ORTHO05D000462 1.9e-12 75.9 73 47.9
Glyma.06G295300 Glycine max HOM05D000609 ORTHO05D000462 2.5e-12 75.5 82 48.8
MD09G1252000 Malus domestica HOM05D000609 ORTHO05D000462 3.3e-12 75.1 79 49.4
Gohir.D04G144600 Gossypium hirsutum HOM05D000609 ORTHO05D000462 4.3e-12 74.7 76 50.0
ClCG02G001100 Citrullus lanatus HOM05D000609 ORTHO05D000462 9.7e-12 73.6 69 47.8
Cpa.g.sc34.132 Carica papaya HOM05D000609 ORTHO05D000462 1.6e-11 72.8 76 43.4
Gohir.A12G138100 Gossypium hirsutum HOM05D000609 ORTHO05D000462 1.6e-11 72.8 76 47.4
Gorai.012G130600 Gossypium raimondii HOM05D000609 ORTHO05D000462 1.6e-11 72.8 75 49.3
Peaxi162Scf00132g00057 Petunia axillaris HOM05D000609 ORTHO05D000462 1.6e-11 72.8 78 44.9
PGR042G1808 Punica granatum HOM05D000609 ORTHO05D000462 1.6e-11 72.8 98 42.9
Psat5g271720 Pisum sativum HOM05D000609 ORTHO05D000462 2.8e-11 72.0 87 50.6
EL10Ac9g20699 Beta vulgaris HOM05D000609 ORTHO05D000462 3.7e-11 71.6 79 50.6
CSS0011861 Camellia sinensis var. sinensis HOM05D000609 ORTHO05D000462 3.7e-11 71.6 86 45.3
Cc05_g06840 Coffea canephora HOM05D000609 ORTHO05D000462 3.7e-11 71.6 82 43.9
Gorai.008G153600 Gossypium raimondii HOM05D000609 ORTHO05D000462 3.7e-11 71.6 83 45.8
CANSAT08G0001 Cannabis sativa HOM05D000609 ORTHO05D000462 6.3e-11 70.9 91 45.1
CAN.G248.38 Capsicum annuum HOM05D000609 ORTHO05D000462 6.3e-11 70.9 82 43.9
Actinidia09869 Actinidia chinensis HOM05D000609 ORTHO05D000462 1.4e-10 69.7 65 52.3
Lj8P114T18 Lonicera japonica HOM05D000609 ORTHO05D000462 1.4e-10 69.7 75 48.0
Phvul.011G118600 Phaseolus vulgaris HOM05D000609 ORTHO05D000462 1.4e-10 69.7 85 45.9
Solyc07g054220.1 Solanum lycopersicum HOM05D000609 ORTHO05D000462 1.4e-10 69.7 95 43.2
Gohir.D12G142100 Gossypium hirsutum HOM05D000609 ORTHO05D000462 1.8e-10 69.3 76 47.4
Gorai.005G202900 Gossypium raimondii HOM05D000609 ORTHO05D000462 1.8e-10 69.3 89 41.6
Lj3g0013758 Lotus japonicus HOM05D000609 ORTHO05D000462 1.8e-10 69.3 71 53.5
MBI17_g42660_MAGBIO Magnolia biondii HOM05D000609 ORTHO05D000462 2.4e-10 68.9 52 61.5
THA.LOC104824714 Tarenaya hassleriana HOM05D000609 ORTHO05D000462 2.4e-10 68.9 92 41.3
Ah.06g183500 Amaranthus hybridus HOM05D000609 ORTHO05D000462 3.1e-10 68.6 97 37.1
Lalb_Chr22g0356501 Lupinus albus HOM05D000609 ORTHO05D000462 3.1e-10 68.6 87 46.0
DCAR_012996 Daucus carota HOM05D000609 ORTHO05D000462 4.1e-10 68.2 83 41.0
PGSC0003DMG400018352 Solanum tuberosum HOM05D000609 ORTHO05D000462 4.1e-10 68.2 74 48.6
VMungo1127G1433 Vigna mungo HOM05D000609 ORTHO05D000462 5.3e-10 67.8 60 53.3
MBI17_g19526_MAGBIO Magnolia biondii HOM05D000609 ORTHO05D000462 6.9e-10 67.4 47 61.7
Lj1P727T48 Lonicera japonica HOM05D000609 ORTHO05D000462 9.0e-10 67.0 64 56.2
Gohir.A04G104800 Gossypium hirsutum HOM05D000609 ORTHO05D000462 1.5e-09 66.2 59 54.2
AUR62044004 Chenopodium quinoa HOM05D000609 ORTHO05D000462 2.0e-09 65.9 96 38.5
Sopen07g028150 Solanum pennellii HOM05D000609 ORTHO05D000462 2.0e-09 65.9 95 41.1
Gohir.A03G157800 Gossypium hirsutum HOM05D000609 ORTHO05D000462 3.4e-09 65.1 82 41.5
Lj3g0018434 Lotus japonicus HOM05D000609 ORTHO05D000462 1.0e-08 63.5 74 51.4
FAN05G4118 Fragaria x ananassa HOM05D000609 ORTHO05D000462 1.3e-08 63.2 43 62.8
RcHm_v2.0_Chr2g0126301 Rosa chinensis HOM05D000609 ORTHO05D000462 3.8e-08 61.6 43 60.5
Ca_01509_v3 Cicer arietinum L. HOM05D000609 ORTHO05D000462 5.0e-08 61.2 85 40.0
FvH4_6g26090 Fragaria vesca HOM05D000609 ORTHO05D000462 6.5e-08 60.8 43 60.5
Medtr2g090235 Medicago truncatula HOM05D000609 ORTHO05D000462 1.1e-07 60.1 79 48.1
SalBow1G7169 Salvia bowleyana HOM05D000609 ORTHO05D000462 1.9e-07 59.3 43 55.8
TPR.G31386 Trifolium pratense HOM05D000609 ORTHO05D000462 1.9e-07 59.3 44 54.5
AUR62037338 Chenopodium quinoa HOM05D000609 ORTHO05D000462 2.5e-07 58.9 85 41.2
Sc21g0002610 Simmondsia chinensis HOM05D000609 ORTHO05D000462 2.5e-07 58.9 42 59.5
vmacro12279 Vaccinium macrocarpon HOM05D000609 ORTHO05D000462 2.5e-07 58.9 50 52.0
Nitab4.5_0002526g0070 Nicotiana tabacum HOM05D000609 ORTHO05D000462 5.5e-07 57.8 61 45.9
Ca_27518_v3 Cicer arietinum L. HOM05D000609 ORTHO05D000462 7.2e-07 57.4 67 47.8
Migut.H01065 Erythranthe guttata HOM05D000609 ORTHO05D000462 7.2e-07 57.4 73 42.5
Sed0006998 Sechium edule HOM05D000609 ORTHO05D000462 7.2e-07 57.4 42 50.0
unitig_26.g9945 Utricularia gibba HOM05D000609 ORTHO05D000462 2.1e-06 55.8 38 52.6
HanXRQChr17g0554691 Helianthus annuus HOM05D000609 ORTHO05D000462 3.6e-06 55.1 66 40.9
Nitab4.5_0003022g0060 Nicotiana tabacum HOM05D000609 ORTHO05D000462 3.6e-06 55.1 74 36.5
SGA_v2.0_scaffold109G31105 Striga asiatica HOM05D000609 ORTHO05D000462 3.6e-06 55.1 54 51.9
Aa31LG2G22040 Aethionema arabicum HOM05D000609 ORTHO05D000462 4.6e-06 54.7 36 55.6
Nitab4.5_0002473g0040 Nicotiana tabacum HOM05D000609 ORTHO05D000462 4.6e-06 54.7 75 38.7
unitig_62.g23175 Utricularia gibba HOM05D000609 ORTHO05D000462 7.9e-06 53.9 47 46.8


User provided reference genes

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