Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.2e-45 186.0 85 100.0
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.8e-30 135.6 81 80.2
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 8.4e-20 100.1 77 59.7
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 2.3e-17 92.0 55 69.1
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.6e-15 85.9 65 58.5
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 1.6e-15 85.9 77 50.6
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 2.2e-15 85.5 65 58.5
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 2.2e-15 85.5 65 55.4
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 2.2e-15 85.5 74 52.7
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 2.8e-15 85.1 77 46.8
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 4.8e-15 84.3 65 55.4
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 6.3e-15 84.0 50 68.0
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 6.3e-15 84.0 54 61.1
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.8e-14 82.4 81 44.4
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 3.1e-14 81.6 58 58.6
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 4.1e-14 81.3 74 48.6
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 4.1e-14 81.3 64 54.7
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 6.9e-14 80.5 45 68.9
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 6.9e-14 80.5 45 68.9
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 9.0e-14 80.1 65 52.3
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 1.2e-13 79.7 45 66.7
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 1.2e-13 79.7 45 68.9
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 1.2e-13 79.7 46 67.4
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.6e-13 78.6 73 47.9
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 3.4e-13 78.2 62 56.5
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 5.9e-13 77.4 44 63.6
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 5.9e-13 77.4 73 46.6
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 5.9e-13 77.4 44 65.9
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 5.9e-13 77.4 43 72.1
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.3e-12 76.3 62 54.8
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.7e-12 75.9 44 63.6
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.7e-12 75.9 50 60.0
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.7e-12 75.9 50 60.0
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 1.7e-12 75.9 50 60.0
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.7e-12 75.9 67 49.3
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 3.8e-12 74.7 68 52.9
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 5.0e-12 74.3 68 51.5
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 8.5e-12 73.6 44 61.4
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 1.1e-11 73.2 74 40.5
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 1.4e-11 72.8 64 48.4
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 1.4e-11 72.8 65 47.7
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 4.2e-11 71.2 64 43.8
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 4.2e-11 71.2 61 47.5
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 5.5e-11 70.9 44 61.4
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 7.2e-11 70.5 63 50.8
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 9.4e-11 70.1 65 49.2
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 1.2e-10 69.7 43 62.8
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 1.2e-10 69.7 54 48.1
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 1.6e-10 69.3 43 60.5
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 2.1e-10 68.9 69 42.0
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 2.1e-10 68.9 43 58.1
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 2.1e-10 68.9 62 45.2
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 2.7e-10 68.6 64 43.8
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 4.6e-10 67.8 43 51.2
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 4.6e-10 67.8 56 53.6
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 6.1e-10 67.4 46 54.3
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 6.1e-10 67.4 43 53.5
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 6.1e-10 67.4 43 53.5
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 7.9e-10 67.0 55 50.9
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 7.9e-10 67.0 64 40.6
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 7.9e-10 67.0 43 53.5
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 1.0e-09 66.6 73 39.7
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 1.0e-09 66.6 54 48.1
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 1.4e-09 66.2 43 53.5
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 1.4e-09 66.2 43 53.5
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 1.8e-09 65.9 55 50.9
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 1.8e-09 65.9 55 50.9
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 1.8e-09 65.9 43 53.5
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 2.3e-09 65.5 43 53.5
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 3.0e-09 65.1 43 53.5
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 3.9e-09 64.7 64 35.9
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.9e-09 64.7 50 48.0
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.9e-09 64.7 50 48.0
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 3.9e-09 64.7 50 48.0
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 6.7e-09 63.9 43 53.5
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 6.7e-09 63.9 49 53.1
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 1.1e-08 63.2 43 48.8
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 1.1e-08 63.2 51 45.1
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 1.1e-08 63.2 52 50.0
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 1.5e-08 62.8 48 47.9
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 1.5e-08 62.8 57 45.6
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 1.5e-08 62.8 53 43.4
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 1.9e-08 62.4 51 47.1
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 2.5e-08 62.0 43 51.2
Nn5g28989 Nelumbo nucifera HOM05D007587 ORTHO05D009657 4.3e-08 61.2 29 86.2
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 7.4e-08 60.5 43 46.5
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 2.8e-07 58.5 49 49.0
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.1e-06 56.6 44 50.0


User provided reference genes

Program Settings