Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 7.6e-68 260.4 133 100.0
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 4.5e-52 208.0 134 81.3
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 1.0e-51 206.8 133 80.5
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 5.0e-51 204.5 133 79.7
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 2.5e-50 202.2 133 78.2
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 3.2e-50 201.8 134 77.6
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 4.2e-50 201.4 133 79.7
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 7.2e-50 200.7 133 78.2
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.2e-49 199.9 133 78.2
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 1.6e-49 199.5 134 79.9
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 1.6e-49 199.5 132 75.0
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 2.1e-49 199.1 134 76.9
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 2.7e-49 198.7 133 77.4
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 4.7e-49 198.0 133 76.7
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 6.1e-49 197.6 133 77.4
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 6.1e-49 197.6 134 76.9
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 1.0e-48 196.8 134 74.6
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 1.0e-48 196.8 134 76.9
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 2.3e-48 195.7 133 73.7
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 2.3e-48 195.7 134 78.4
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 3.9e-48 194.9 133 76.7
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 5.1e-48 194.5 134 76.9
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 5.1e-48 194.5 134 78.4
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 6.7e-48 194.1 133 78.2
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 8.8e-48 193.7 134 76.1
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 8.8e-48 193.7 134 76.9
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.5e-47 193.0 134 75.4
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 2.0e-47 192.6 134 74.6
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 2.0e-47 192.6 133 75.9
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 2.0e-47 192.6 134 73.1
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 5.7e-47 191.0 134 74.6
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 7.4e-47 190.7 134 74.6
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 7.4e-47 190.7 128 78.1
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 9.7e-47 190.3 134 76.1
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 9.7e-47 190.3 107 86.9
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 9.7e-47 190.3 133 75.9
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.3e-46 189.9 133 75.2
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 1.3e-46 189.9 134 75.4
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 1.7e-46 189.5 133 75.9
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 1.7e-46 189.5 137 73.0
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 2.8e-46 188.7 134 76.1
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 2.8e-46 188.7 134 76.9
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 4.8e-46 188.0 137 75.2
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 4.8e-46 188.0 137 75.2
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 4.8e-46 188.0 133 73.7
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 6.3e-46 187.6 137 75.2
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 6.3e-46 187.6 137 75.2
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 6.3e-46 187.6 137 75.2
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 6.3e-46 187.6 137 75.2
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 8.2e-46 187.2 134 74.6
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 8.2e-46 187.2 133 70.7
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 1.1e-45 186.8 133 71.4
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 1.1e-45 186.8 133 71.4
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 1.1e-45 186.8 134 73.9
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.4e-45 186.4 137 74.5
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.8e-45 186.0 133 69.2
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 4.1e-45 184.9 137 73.7
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 4.1e-45 184.9 134 70.9
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 5.3e-45 184.5 134 70.1
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 5.3e-45 184.5 137 73.7
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.3e-45 184.5 137 73.7
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 7.0e-45 184.1 133 68.4
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 9.1e-45 183.7 133 72.9
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 1.5e-44 183.0 133 72.9
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.0e-44 182.6 137 73.0
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.0e-44 182.6 134 74.6
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 2.6e-44 182.2 134 73.9
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 2.6e-44 182.2 119 81.5
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 2.6e-44 182.2 134 70.9
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 3.5e-44 181.8 134 72.4
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 4.5e-44 181.4 134 72.4
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 5.9e-44 181.0 134 71.6
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 7.7e-44 180.6 136 72.8
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 1.0e-43 180.3 134 74.6
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 1.0e-43 180.3 134 74.6
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 1.7e-43 179.5 135 72.6
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 3.8e-43 178.3 136 71.3
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 3.8e-43 178.3 134 71.6
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 5.0e-43 177.9 134 71.6
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 8.5e-43 177.2 110 80.9
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 1.1e-42 176.8 134 71.6
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 1.4e-42 176.4 113 77.0
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 1.9e-42 176.0 109 79.8
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 1.9e-42 176.0 126 72.2
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 1.9e-42 176.0 109 79.8
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 1.9e-42 176.0 109 79.8
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 3.2e-42 175.3 134 71.6
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 3.2e-42 175.3 127 69.3
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 4.2e-42 174.9 134 69.4
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 5.5e-42 174.5 134 69.4
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 7.2e-42 174.1 135 70.4
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 9.4e-42 173.7 134 67.9
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 1.6e-41 172.9 125 72.0
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 1.6e-41 172.9 121 76.9
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 2.7e-41 172.2 110 78.2
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 2.7e-41 172.2 120 75.0
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 2.7e-41 172.2 134 67.9
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 3.6e-41 171.8 132 72.0
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 4.7e-41 171.4 110 80.0
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 8.0e-41 170.6 122 73.0
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 2.3e-40 169.1 123 72.4
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 3.0e-40 168.7 134 65.7
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 5.2e-40 167.9 120 73.3
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 2.0e-39 166.0 133 67.7
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 2.0e-39 166.0 136 66.9
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 2.6e-39 165.6 133 63.9
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 9.7e-39 163.7 131 67.2
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 1.7e-38 162.9 134 66.4
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 1.7e-38 162.9 134 67.2
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 2.2e-38 162.5 120 70.8
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 2.2e-38 162.5 133 61.7
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 2.8e-38 162.2 92 84.8
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 3.7e-38 161.8 110 74.5
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 4.8e-38 161.4 133 63.9
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 1.1e-37 160.2 115 72.2
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 1.8e-37 159.5 134 65.7
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 9.1e-37 157.1 92 82.6
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.6e-36 156.4 112 72.3
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 2.6e-36 155.6 128 66.4
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 7.7e-36 154.1 92 80.4
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 5.0e-35 151.4 100 77.0
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.1e-34 150.2 122 66.4
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 4.2e-34 148.3 133 59.4
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 2.1e-33 146.0 107 67.3
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 1.4e-32 143.3 134 59.0
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.8e-29 132.9 92 73.9
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 7.7e-28 127.5 110 62.7
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 1.4e-21 106.7 109 50.5
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 2.4e-21 105.9 109 52.3
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 3.1e-21 105.5 92 56.5
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.0e-21 104.4 133 47.4
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 1.6e-20 103.2 91 54.9
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 1.3e-19 100.1 116 48.3
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 3.0e-16 89.0 51 78.4
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 4.1e-13 78.6 116 46.6
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 7.0e-13 77.8 88 51.1
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 1.0e-11 73.9 98 42.9
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 1.7e-11 73.2 117 38.5
Actinidia36173 Actinidia chinensis HOM05D005499 ORTHO05D006666 3.6e-09 65.5 82 54.9
Dinv25304 Davidia involucrata HOM05D000009 ORTHO05D000008 4.4e-07 58.5 54 68.5


User provided reference genes

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