Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24316 Nelumbo nucifera HOM05D000136 ORTHO05D000080 3.1e-25 117.5 52 100.0
Rhsim08G0019300 Rhododendron simsii HOM05D000136 ORTHO05D000080 1.0e-15 85.9 43 81.4
Cfa007798 Carpinus fangiana HOM05D000136 ORTHO05D000080 6.5e-15 83.2 47 74.5
CiPaw.04G047800 Carya illinoinensis HOM05D000136 ORTHO05D000080 6.5e-15 83.2 47 72.3
Actinidia28802 Actinidia chinensis HOM05D000136 ORTHO05D000080 2.5e-14 81.3 43 76.7
Haze_14274 Corylus avellana HOM05D000136 ORTHO05D000080 3.2e-14 80.9 47 72.3
Psat2g046440 Pisum sativum HOM05D000136 ORTHO05D000080 3.2e-14 80.9 48 75.0
Dinv28188 Davidia involucrata HOM05D000136 ORTHO05D000080 5.5e-14 80.1 45 71.1
Prupe.3G017400 Prunus persica HOM05D000136 ORTHO05D000080 7.2e-14 79.7 49 65.3
RcHm_v2.0_Chr3g0491101 Rosa chinensis HOM05D000136 ORTHO05D000080 7.2e-14 79.7 51 66.7
TWI77G0414 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 7.2e-14 79.7 47 68.1
Cpa.g.sc116.65 Carica papaya HOM05D000136 ORTHO05D000080 9.4e-14 79.3 51 64.7
Thecc.04G054500 Theobroma cacao HOM05D000136 ORTHO05D000080 9.4e-14 79.3 47 68.1
Cc07_g13330 Coffea canephora HOM05D000136 ORTHO05D000080 3.6e-13 77.4 45 66.7
Gohir.D11G141800 Gossypium hirsutum HOM05D000136 ORTHO05D000080 3.6e-13 77.4 47 66.0
Gorai.007G152200 Gossypium raimondii HOM05D000136 ORTHO05D000080 3.6e-13 77.4 47 66.0
vmacro18527 Vaccinium macrocarpon HOM05D000136 ORTHO05D000080 3.6e-13 77.4 46 73.9
MD09G1271100 Malus domestica HOM05D000136 ORTHO05D000080 6.1e-13 76.6 49 61.2
QL02p058483 Quercus lobata HOM05D000136 ORTHO05D000080 6.1e-13 76.6 47 70.2
QL10p014223 Quercus lobata HOM05D000136 ORTHO05D000080 6.1e-13 76.6 47 70.2
Actinidia35725 Actinidia chinensis HOM05D000136 ORTHO05D000080 1.0e-12 75.9 43 72.1
Migut.K00914 Erythranthe guttata HOM05D000136 ORTHO05D000080 1.0e-12 75.9 46 69.6
Gohir.A11G135500 Gossypium hirsutum HOM05D000136 ORTHO05D000080 1.0e-12 75.9 47 63.8
Duzib138G1427 Durio zibethinus HOM05D000136 ORTHO05D000080 1.8e-12 75.1 47 63.8
CiPaw.03G072900 Carya illinoinensis HOM05D000136 ORTHO05D000080 2.3e-12 74.7 47 63.8
Ciclev10013053m.g Citrus clementina HOM05D000136 ORTHO05D000080 2.3e-12 74.7 50 62.0
Lj4C261T3 Lonicera japonica HOM05D000136 ORTHO05D000080 2.3e-12 74.7 43 72.1
Hma1.2p1_1583F.1_g292020 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 4.0e-12 73.9 43 69.8
Medtr5g078040 Medicago truncatula HOM05D000136 ORTHO05D000080 4.0e-12 73.9 48 66.7
Oeu062716.1 Olea europaea HOM05D000136 ORTHO05D000080 4.0e-12 73.9 46 65.2
Sabra17G0108800 Salix brachista HOM05D000136 ORTHO05D000080 4.0e-12 73.9 47 63.8
Atru.chr1.1997 Acer truncatum HOM05D000136 ORTHO05D000080 5.2e-12 73.6 51 58.8
Phvul.008G237000 Phaseolus vulgaris HOM05D000136 ORTHO05D000080 5.2e-12 73.6 48 64.6
VMungo0647G1596 Vigna mungo HOM05D000136 ORTHO05D000080 6.8e-12 73.2 48 66.7
Eucgr.F02898 Eucalyptus grandis HOM05D000136 ORTHO05D000080 8.8e-12 72.8 47 61.7
Sed0021105 Sechium edule HOM05D000136 ORTHO05D000080 8.8e-12 72.8 50 58.0
arahy.Tifrunner.gnm1.ann1.0J9HE3 Arachis hypogaea HOM05D000136 ORTHO05D000080 1.2e-11 72.4 48 66.7
Potri.017G130700 Populus trichocarpa HOM05D000136 ORTHO05D000080 1.2e-11 72.4 47 63.8
Glyma.14G214800 Glycine max HOM05D000136 ORTHO05D000080 1.5e-11 72.0 48 62.5
arahy.Tifrunner.gnm1.ann1.80NJ1B Arachis hypogaea HOM05D000136 ORTHO05D000080 2.0e-11 71.6 48 64.6
FAN26G1414 Fragaria x ananassa HOM05D000136 ORTHO05D000080 2.0e-11 71.6 52 61.5
FAN26G2903 Fragaria x ananassa HOM05D000136 ORTHO05D000080 2.0e-11 71.6 52 61.5
FAN28G0465 Fragaria x ananassa HOM05D000136 ORTHO05D000080 2.0e-11 71.6 52 61.5
Sabra04G0056800 Salix brachista HOM05D000136 ORTHO05D000080 2.0e-11 71.6 50 60.0
CDE05G1383 Ceratophyllum demersum HOM05D000136 ORTHO05D000080 3.4e-11 70.9 47 59.6
Glyma.02G244300 Glycine max HOM05D000136 ORTHO05D000080 3.4e-11 70.9 48 62.5
MSTRG.15663 Avicennia marina HOM05D000136 ORTHO05D000080 4.4e-11 70.5 46 60.9
MBI19_g34084_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 5.7e-11 70.1 42 71.4
Psat2g046480 Pisum sativum HOM05D000136 ORTHO05D000080 5.7e-11 70.1 51 60.8
COL.COLO4_13429 Corchorus olitorius HOM05D000136 ORTHO05D000080 9.8e-11 69.3 49 63.3
FvH4_1g07080 Fragaria vesca HOM05D000136 ORTHO05D000080 9.8e-11 69.3 51 62.7
FAN19G0395 Fragaria x ananassa HOM05D000136 ORTHO05D000080 9.8e-11 69.3 51 62.7
Peaxi162Scf00134g01716 Petunia axillaris HOM05D000136 ORTHO05D000080 9.8e-11 69.3 43 62.8
SalBow5G4394 Salvia bowleyana HOM05D000136 ORTHO05D000080 9.8e-11 69.3 43 62.8
FAN23G1422 Fragaria x ananassa HOM05D000136 ORTHO05D000080 1.3e-10 68.9 53 62.3
LjContig00141g0010941 Lotus japonicus HOM05D000136 ORTHO05D000080 1.7e-10 68.6 48 60.4
Sopen04g006610 Solanum pennellii HOM05D000136 ORTHO05D000080 2.2e-10 68.2 43 62.8
PGSC0003DMG400023622 Solanum tuberosum HOM05D000136 ORTHO05D000080 2.2e-10 68.2 43 62.8
PGR004G1149 Punica granatum HOM05D000136 ORTHO05D000080 2.8e-10 67.8 53 56.6
Sc14g0006540 Simmondsia chinensis HOM05D000136 ORTHO05D000080 2.8e-10 67.8 47 59.6
Solyc04g014480.3 Solanum lycopersicum HOM05D000136 ORTHO05D000080 3.7e-10 67.4 43 62.8
ClCG01G008680 Citrullus lanatus HOM05D000136 ORTHO05D000080 4.8e-10 67.0 47 57.4
AUR62018223 Chenopodium quinoa HOM05D000136 ORTHO05D000080 6.3e-10 66.6 47 53.2
Ca_05833_v3 Cicer arietinum L. HOM05D000136 ORTHO05D000080 6.3e-10 66.6 47 63.8
TPR.G8278 Trifolium pratense HOM05D000136 ORTHO05D000080 1.1e-09 65.9 48 60.4
Lsat_1_v5_gn_3_65081 Lactuca sativa HOM05D000136 ORTHO05D000080 1.4e-09 65.5 43 65.1
Nitab4.5_0012752g0010 Nicotiana tabacum HOM05D000136 ORTHO05D000080 1.4e-09 65.5 43 65.1
Nitab4.5_0000574g0090 Nicotiana tabacum HOM05D000136 ORTHO05D000080 1.8e-09 65.1 43 62.8
CAN.G525.11 Capsicum annuum HOM05D000136 ORTHO05D000080 2.4e-09 64.7 44 59.1
unitig_748.g8468 Utricularia gibba HOM05D000655 ORTHO05D001166 2.4e-09 64.7 42 59.5
Ah.10g032400 Amaranthus hybridus HOM05D000136 ORTHO05D000080 5.4e-09 63.5 47 51.1
Lalb_Chr07g0191211 Lupinus albus HOM05D000136 ORTHO05D000080 7.0e-09 63.2 48 56.2
HanXRQChr12g0381711 Helianthus annuus HOM05D000136 ORTHO05D000080 9.1e-09 62.8 43 67.4
EL10Ac2g03181 Beta vulgaris HOM05D000136 ORTHO05D000080 1.2e-08 62.4 46 52.2
THA.LOC104805626 Tarenaya hassleriana HOM05D000136 ORTHO05D000080 1.6e-08 62.0 47 57.4
HPP92_009633 Vanilla planifolia HOM05D000136 ORTHO05D000080 2.7e-08 61.2 47 55.3
CANSAT78G0924 Cannabis sativa HOM05D000136 ORTHO05D000080 4.5e-08 60.5 47 55.3
Os06g0253100 Oryza sativa ssp. japonica HOM05D000136 ORTHO05D000080 7.7e-08 59.7 49 55.1
MELO3C025085.2 Cucumis melo HOM05D000136 ORTHO05D000080 1.0e-07 59.3 47 51.1
SGA_v2.0_scaffold45G17163 Striga asiatica HOM05D000136 ORTHO05D000080 2.9e-07 57.8 43 58.1
Aa31LG9G17450 Aethionema arabicum HOM05D000136 ORTHO05D000080 3.8e-07 57.4 47 57.4
Sp7g04400 Schrenkiella parvula HOM05D000136 ORTHO05D000080 1.1e-06 55.8 48 56.2
A04p10840 Brassica napus HOM05D000136 ORTHO05D000080 1.5e-06 55.5 48 54.2
BraA04t16750Z Brassica rapa HOM05D000136 ORTHO05D000080 1.5e-06 55.5 48 54.2
PSO478G0518 Papaver somniferum HOM05D000136 ORTHO05D000080 2.5e-06 54.7 42 57.1
Zm00001eb371530 Zea mays HOM05D000136 ORTHO05D000080 2.5e-06 54.7 49 46.9
C04p44590 Brassica napus HOM05D000136 ORTHO05D000080 7.2e-06 53.1 48 52.1
BolC4t26032H Brassica oleracea HOM05D000136 ORTHO05D000080 7.2e-06 53.1 48 52.1


User provided reference genes

Program Settings