Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 3170.6 1603 100.0
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2555.0 1608 80.5
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2494.2 1608 77.2
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2484.9 1609 76.8
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2476.8 1606 77.2
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2441.8 1618 75.8
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2430.6 1611 75.2
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2420.2 1611 74.8
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2417.1 1612 75.5
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2416.0 1619 75.2
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2415.2 1611 75.3
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2410.9 1611 74.9
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2405.2 1612 74.8
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2400.9 1614 75.7
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2399.4 1614 74.9
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2398.2 1600 75.5
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2392.1 1612 74.8
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2387.1 1615 75.2
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2379.0 1610 73.9
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2374.7 1607 74.1
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2371.3 1611 73.9
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2367.8 1623 73.3
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2364.3 1619 72.9
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2363.6 1607 74.6
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2353.6 1595 74.0
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2353.2 1612 73.3
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2344.7 1616 72.8
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2335.1 1612 72.0
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2328.5 1615 72.6
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2325.1 1582 73.7
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2324.3 1508 77.5
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2317.0 1611 71.4
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2312.7 1612 72.1
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2301.6 1504 76.6
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2294.6 1636 71.8
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2293.1 1606 71.4
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2285.8 1615 71.2
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2276.9 1633 70.2
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2276.5 1619 70.4
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2266.1 1640 69.5
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2254.2 1667 69.2
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2245.3 1595 71.4
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2243.0 1623 69.6
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2240.3 1606 69.7
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2237.6 1605 70.8
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2233.4 1600 70.2
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2233.0 1589 70.8
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2230.3 1598 71.3
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2224.5 1607 70.4
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2221.4 1924 61.8
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2213.0 1596 69.9
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2207.2 1652 69.0
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2206.8 1626 69.3
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2206.8 1614 69.8
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2203.7 1620 69.4
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2202.6 1614 69.8
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2201.0 1616 69.2
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2197.9 1617 69.4
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2194.5 1622 68.9
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2189.5 1626 69.2
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2189.5 1604 68.8
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2183.7 1594 69.6
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2182.5 1601 68.6
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2177.9 1608 68.8
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2174.1 1447 75.1
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 2172.9 1601 69.6
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2172.1 1619 68.7
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2158.3 1597 68.9
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2157.9 1592 68.7
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2154.8 1514 71.5
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 2140.2 1603 67.7
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2137.8 1617 68.0
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2136.3 1607 67.8
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2126.3 1615 67.7
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2121.7 1613 66.8
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2121.3 1616 67.1
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2120.1 1619 67.5
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2117.0 1619 67.5
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2114.0 1618 66.3
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2104.7 1618 66.7
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2090.1 1615 66.9
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2089.3 1417 72.9
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2088.5 1615 66.9
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2068.9 1553 68.1
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2055.8 1953 56.9
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2050.8 1409 74.3
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2028.1 1352 74.9
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1983.4 1473 68.5
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1972.6 1623 63.2
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1944.1 1618 62.9
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1830.8 1198 75.7
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1828.5 1583 60.5
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1822.0 1601 59.7
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1656.7 1568 57.7
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1614.4 1101 73.5
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1607.8 1212 67.9
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1569.3 1416 60.0
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1507.3 1626 51.2
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1479.2 1203 62.2
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1456.8 1374 57.9
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1449.5 1614 49.9
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1433.7 977 72.6
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1393.3 969 72.0
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1376.7 1594 47.1
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1205.3 1077 58.0
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1137.9 732 77.6
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1134.0 1603 44.9
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.2e-276 957.6 647 73.6
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 1.9e-245 854.0 622 68.6
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 6.1e-236 822.4 599 71.0
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 3.0e-235 820.1 584 71.2
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 1.7e-233 814.3 531 76.8
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.4e-224 783.9 601 67.6
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.2e-223 781.6 590 67.8
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 4.7e-220 769.6 649 61.9
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 1.2e-204 718.4 522 70.5
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.4e-203 714.9 498 71.3
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 1.2e-194 685.3 508 70.3
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 1.2e-186 658.7 517 67.5
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 1.9e-181 641.3 513 66.1
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 2.8e-180 637.5 642 53.4
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 8.3e-177 625.9 412 77.2
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 3.6e-172 610.5 477 66.7
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 4.7e-164 583.6 553 59.5
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 3.4e-162 577.4 484 60.3
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 4.8e-148 530.4 360 75.8
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 6.0e-143 513.5 325 81.5
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 5.6e-141 506.9 338 73.4
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.4e-123 448.4 369 62.9
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.9e-121 441.4 398 59.0
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.0e-118 433.0 292 74.7
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 5.9e-114 417.2 397 55.7
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.3e-113 416.0 314 65.9
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 4.5e-106 391.0 318 61.3
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.6e-103 382.5 318 60.4
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 3.2e-96 358.2 248 70.2
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 3.6e-95 354.8 248 67.3
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 1.0e-78 300.1 212 72.6
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 2.6e-61 242.3 161 73.9
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 3.4e-61 241.9 142 80.3
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 6.4e-60 237.7 161 70.2
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 3.3e-56 225.3 212 58.5
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 3.1e-54 218.8 142 76.8
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 5.4e-51 208.0 190 59.5
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 2.5e-40 172.6 134 66.4
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 5.6e-40 171.4 119 70.6
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 4.2e-35 155.2 102 69.6
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 5.4e-35 154.8 115 66.1
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 1.3e-33 150.2 93 74.2
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.3e-32 145.6 142 56.3
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.8e-31 141.7 143 54.5
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.8e-31 141.7 143 54.5
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.8e-31 141.7 143 54.5
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.8e-31 141.7 143 54.5
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.8e-31 141.7 143 54.5
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.8e-31 141.7 143 54.5
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.0e-30 138.7 143 53.8
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 9.0e-30 137.5 143 53.1
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 4.5e-29 135.2 101 58.4
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 8.4e-28 131.0 108 67.6
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 1.9e-27 129.8 84 71.4
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.3e-24 119.0 135 50.4
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.6e-24 118.2 135 50.4
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 2.4e-22 112.8 88 62.5
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 4.0e-22 112.1 88 61.4
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 2.6e-21 109.4 92 56.5
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 2.2e-15 89.7 51 76.5
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.2e-15 89.7 75 57.3
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 9.0e-14 84.3 84 53.6
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 2.6e-13 82.8 67 67.2
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.4e-11 77.0 56 66.1
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 4.2e-11 75.5 54 68.5
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 3.0e-09 69.3 54 53.7
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 8.8e-09 67.8 144 41.0
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 1.5e-08 67.0 50 64.0
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 4.3e-08 65.5 54 59.3
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 4.8e-07 62.0 38 65.8


User provided reference genes

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