Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 0.0e+00 1500.3 807 100.0
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 5.5e-161 572.4 869 48.4
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 4.9e-117 426.4 823 41.2
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 3.4e-94 350.5 804 39.4
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 1.0e-90 339.0 827 38.6
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 2.1e-88 331.3 829 37.9
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 6.2e-88 329.7 832 38.1
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 6.4e-85 319.7 845 35.9
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 6.4e-85 319.7 816 36.6
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 8.4e-85 319.3 861 36.0
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.9e-84 318.2 807 35.3
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 7.9e-83 312.8 822 36.4
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 6.9e-79 299.7 493 45.2
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.3e-74 285.4 822 34.8
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 5.1e-74 283.5 809 34.2
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.1e-73 282.3 384 50.8
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 7.4e-73 279.6 834 33.1
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.8e-71 275.0 787 35.2
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 2.0e-70 271.6 810 35.4
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 4.5e-70 270.4 834 35.3
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 1.7e-69 268.5 813 34.4
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 1.1e-68 265.8 802 33.3
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 7.9e-67 259.6 809 33.6
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 6.7e-66 256.5 389 45.8
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 8.7e-66 256.1 820 33.2
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 3.7e-64 250.8 799 33.9
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 1.1e-63 249.2 680 34.6
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 3.1e-63 247.7 810 31.2
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 2.0e-62 245.0 829 32.6
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 2.0e-62 245.0 810 33.7
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 3.4e-62 244.2 412 44.4
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 7.7e-62 243.0 822 31.5
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 5.5e-60 236.9 662 34.3
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 9.4e-60 236.1 652 33.7
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 1.2e-59 235.7 813 31.4
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.6e-59 235.3 798 31.2
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 1.6e-59 235.3 800 31.9
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 6.1e-59 233.4 613 36.9
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 7.9e-59 233.0 823 31.7
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 7.9e-59 233.0 797 31.7
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 1.4e-58 232.3 309 51.8
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 2.3e-58 231.5 925 30.1
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 4.3e-57 227.3 832 32.6
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.4e-55 222.2 831 31.4
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 2.2e-53 214.9 825 30.7
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 5.0e-53 213.8 745 32.9
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.4e-52 212.2 418 40.0
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 5.5e-52 210.3 827 32.4
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 1.6e-51 208.8 837 30.0
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 4.7e-51 207.2 871 28.2
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 6.1e-51 206.8 637 34.4
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 5.1e-50 203.8 262 46.2
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 8.8e-50 203.0 854 30.7
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.1e-49 202.6 801 29.3
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 2.6e-49 201.4 343 42.6
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 3.3e-49 201.1 680 31.8
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 5.7e-49 200.3 820 29.1
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 5.7e-49 200.3 418 39.5
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.7e-49 199.5 820 29.5
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 3.7e-48 197.6 651 32.0
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 7.0e-47 193.4 895 29.1
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 3.5e-46 191.0 262 47.7
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.7e-46 189.9 798 29.3
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 2.2e-45 188.3 872 30.6
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 2.9e-45 188.0 717 31.7
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 2.9e-45 188.0 478 36.0
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 5.0e-45 187.2 727 30.0
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 5.5e-44 183.7 310 42.3
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 7.2e-44 183.3 479 33.0
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 1.6e-43 182.2 849 29.6
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 3.6e-43 181.0 268 43.7
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 5.2e-42 177.2 820 30.1
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 6.7e-42 176.8 159 64.8
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 8.8e-42 176.4 808 29.7
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 5.7e-41 173.7 806 28.9
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 7.4e-41 173.3 830 28.8
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 3.1e-39 167.9 819 28.9
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 4.1e-39 167.5 292 42.5
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 7.0e-39 166.8 277 40.8
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 9.1e-39 166.4 807 29.5
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 7.7e-38 163.3 832 28.2
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.3e-37 162.5 474 31.4
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.5e-36 159.1 533 32.1
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 5.5e-36 157.1 314 36.3
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 7.2e-36 156.8 272 40.4
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 6.1e-35 153.7 304 36.2
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 1.2e-33 149.4 139 54.7
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.5e-33 149.1 278 39.9
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 9.7e-33 146.4 276 38.8
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.7e-33 146.4 531 31.6
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 2.8e-32 144.8 276 39.1
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 3.7e-32 144.4 678 29.2
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.4e-31 142.5 192 41.7
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 3.1e-31 141.4 264 39.0
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 2.7e-30 138.3 281 36.3
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 2.7e-30 138.3 281 36.3
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.0e-29 136.3 281 35.2
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.0e-29 136.3 374 32.4
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 2.2e-29 135.2 273 38.1
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 2.2e-29 135.2 780 26.8
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 2.9e-29 134.8 236 39.0
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 3.8e-29 134.4 272 36.8
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 1.5e-28 132.5 272 37.9
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 1.9e-28 132.1 748 27.3
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.5e-28 131.7 524 30.3
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 3.2e-28 131.3 811 28.1
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 4.2e-28 131.0 687 27.8
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 5.5e-28 130.6 152 46.7
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 1.2e-27 129.4 314 35.4
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 1.6e-27 129.0 270 34.8
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 2.1e-27 128.6 206 42.7
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 3.6e-27 127.9 298 34.6
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 4.7e-27 127.5 231 39.4
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 8.0e-27 126.7 475 29.7
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 3.0e-26 124.8 281 34.9
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 6.8e-26 123.6 299 35.8
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.0e-25 122.1 282 33.0
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 3.4e-25 121.3 295 33.6
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 7.5e-25 120.2 836 26.4
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.8e-24 118.2 248 36.3
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 4.8e-24 117.5 179 42.5
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 8.3e-24 116.7 256 36.3
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 1.4e-23 115.9 234 36.3
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 2.4e-23 115.2 268 33.2
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 3.1e-23 114.8 306 32.4
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 3.1e-23 114.8 658 27.1
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.6e-22 112.5 255 32.9
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 3.5e-22 111.3 544 29.6
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 1.3e-21 109.4 365 29.6
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.3e-21 109.4 182 39.0
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.7e-21 109.0 236 33.9
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 3.8e-21 107.8 266 33.1
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 8.6e-21 106.7 274 32.5
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 8.6e-21 106.7 175 40.0
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 2.1e-19 102.1 163 39.9
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 4.0e-18 97.8 270 31.5
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.0e-18 97.8 235 32.8
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.2e-17 96.3 127 41.7
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.2e-17 96.3 127 41.7
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 5.7e-17 94.0 314 28.3
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 4.9e-16 90.9 60 70.0
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.4e-15 89.4 150 39.3
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 1.4e-15 89.4 528 26.9
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.2e-15 88.2 157 39.5
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 9.2e-15 86.7 167 34.1
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 3.5e-14 84.7 806 24.9
Actinidia05492 Actinidia chinensis HOM05D003739 ORTHO05D003996 6.6e-13 80.5 90 57.8
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 1.9e-12 79.0 126 34.1
MBI16_g47782_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 9.5e-12 76.6 238 33.6
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 2.1e-11 75.5 385 29.1
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 2.1e-11 75.5 106 34.0
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 3.1e-10 71.6 92 44.6
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 7.5e-09 67.0 82 43.9
HPP92_008918 Vanilla planifolia HOM05D003739 ORTHO05D003996 7.5e-09 67.0 117 40.2
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.7e-08 65.9 135 39.3
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.2e-08 65.5 133 39.1
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.1e-07 63.2 55 56.4
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 1.9e-07 62.4 586 25.3
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 9.2e-07 60.1 248 28.2
Thhalv10000433m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 7.8e-06 57.0 60 48.3


User provided reference genes

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