Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24161 Nelumbo nucifera HOM05D004761 ORTHO05D005813 8.5e-117 423.7 217 100.0
TAR629G2706 Trochodendron aralioides HOM05D004761 ORTHO05D005813 5.8e-49 198.4 149 74.5
MELO3C012254.2 Cucumis melo HOM05D004761 ORTHO05D005813 4.8e-43 178.7 149 70.5
CsaV3_5G034380 Cucumis sativus L. HOM05D004761 ORTHO05D005813 4.8e-43 178.7 148 68.9
ClCG05G022660 Citrullus lanatus HOM05D004761 ORTHO05D005813 1.2e-41 174.1 148 67.6
Dinv21082 Davidia involucrata HOM05D004761 ORTHO05D005813 2.0e-41 173.3 150 67.3
CSS0041255 Camellia sinensis var. sinensis HOM05D004761 ORTHO05D005813 3.4e-41 172.6 152 63.8
FAN07G1541 Fragaria x ananassa HOM05D004761 ORTHO05D005813 4.9e-40 168.7 145 66.9
Sed0020611 Sechium edule HOM05D004761 ORTHO05D005813 4.9e-40 168.7 148 67.6
FAN22G1660 Fragaria x ananassa HOM05D004761 ORTHO05D005813 2.4e-39 166.4 145 66.9
Manes.14G102900 Manihot esculenta HOM05D004761 ORTHO05D005813 2.4e-39 166.4 148 64.9
Hma1.2p1_0061F.1_g033840 Hydrangea macrophylla HOM05D004761 ORTHO05D005813 4.2e-39 165.6 150 66.7
Oeu003182.1 Olea europaea HOM05D004761 ORTHO05D005813 7.1e-39 164.9 150 62.7
MSTRG.843 Avicennia marina HOM05D004761 ORTHO05D005813 2.1e-38 163.3 150 63.3
CANSAT01G0623 Cannabis sativa HOM05D004761 ORTHO05D005813 6.0e-38 161.8 146 62.3
CiPaw.16G065200 Carya illinoinensis HOM05D004761 ORTHO05D005813 6.0e-38 161.8 145 64.1
TWI31G0637 Tripterygium wilfordii HOM05D004761 ORTHO05D005813 7.9e-38 161.4 154 60.4
GSVIVG01011891001 Vitis vinifera HOM05D004761 ORTHO05D005813 7.9e-38 161.4 148 63.5
PGR119G1215 Punica granatum HOM05D004761 ORTHO05D005813 1.3e-37 160.6 149 65.8
QL01p042268 Quercus lobata HOM05D004761 ORTHO05D005813 1.3e-37 160.6 147 63.3
CDE05G1514 Ceratophyllum demersum HOM05D004761 ORTHO05D005813 3.0e-37 159.5 143 64.3
Ciclev10016274m.g Citrus clementina HOM05D004761 ORTHO05D005813 3.9e-37 159.1 147 63.3
Cc11_g10100 Coffea canephora HOM05D004761 ORTHO05D005813 3.9e-37 159.1 156 61.5
FvH4_4g27310 Fragaria vesca HOM05D004761 ORTHO05D005813 5.1e-37 158.7 145 65.5
FAN12G1206 Fragaria x ananassa HOM05D004761 ORTHO05D005813 5.1e-37 158.7 145 65.5
FAN12G1874 Fragaria x ananassa HOM05D004761 ORTHO05D005813 5.1e-37 158.7 145 65.5
BcaC06g33937 Brassica carinata HOM05D004761 ORTHO05D005813 6.7e-37 158.3 159 64.2
BolC7t44030H Brassica oleracea HOM05D004761 ORTHO05D005813 6.7e-37 158.3 159 64.2
C07p34980 Brassica napus HOM05D004761 ORTHO05D005813 8.7e-37 157.9 156 62.8
DCAR_023656 Daucus carota HOM05D004761 ORTHO05D005813 8.7e-37 157.9 152 61.8
Peaxi162Scf00382g00825 Petunia axillaris HOM05D004761 ORTHO05D005813 8.7e-37 157.9 148 60.8
Prupe.1G311800 Prunus persica HOM05D004761 ORTHO05D005813 8.7e-37 157.9 145 64.1
MD16G1042300 Malus domestica HOM05D004761 ORTHO05D005813 1.9e-36 156.8 145 62.1
EL10Ac6g14394 Beta vulgaris HOM05D004761 ORTHO05D005813 4.3e-36 155.6 153 61.4
Eucgr.G02317 Eucalyptus grandis HOM05D004761 ORTHO05D005813 4.3e-36 155.6 149 60.4
TWI79G0635 Tripterygium wilfordii HOM05D004761 ORTHO05D005813 4.3e-36 155.6 149 61.1
Aqoxy3G00293 Aquilegia oxysepala HOM05D004761 ORTHO05D005813 5.6e-36 155.2 149 62.4
BcaB07g30626 Brassica carinata HOM05D004761 ORTHO05D005813 7.4e-36 154.8 152 60.5
CAN.G610.79 Capsicum annuum HOM05D004761 ORTHO05D005813 7.4e-36 154.8 150 62.0
HPP92_009407 Vanilla planifolia HOM05D004761 ORTHO05D005813 7.4e-36 154.8 153 62.7
Thhalv10004759m.g Eutrema salsugineum HOM05D004761 ORTHO05D005813 1.3e-35 154.1 158 60.1
Thecc.02G229900 Theobroma cacao HOM05D004761 ORTHO05D005813 1.6e-35 153.7 146 61.0
BcaC04g21408 Brassica carinata HOM05D004761 ORTHO05D005813 2.1e-35 153.3 158 59.5
C09p32130 Brassica napus HOM05D004761 ORTHO05D005813 2.1e-35 153.3 158 59.5
BolC9t56063H Brassica oleracea HOM05D004761 ORTHO05D005813 2.1e-35 153.3 158 59.5
Cfa018591 Carpinus fangiana HOM05D004761 ORTHO05D005813 2.1e-35 153.3 146 63.7
Cpa.g.sc1.34 Carica papaya HOM05D004761 ORTHO05D005813 2.8e-35 152.9 154 62.3
Sp2g15160 Schrenkiella parvula HOM05D004761 ORTHO05D005813 2.8e-35 152.9 158 58.9
MD13G1041400 Malus domestica HOM05D004761 ORTHO05D005813 3.7e-35 152.5 154 59.1
Sc11g0003470 Simmondsia chinensis HOM05D004761 ORTHO05D005813 3.7e-35 152.5 149 63.1
PGSC0003DMG400014544 Solanum tuberosum HOM05D004761 ORTHO05D005813 3.7e-35 152.5 153 60.8
AL5G14580 Arabidopsis lyrata HOM05D004761 ORTHO05D005813 4.8e-35 152.1 155 59.4
Haze_17489 Corylus avellana HOM05D004761 ORTHO05D005813 6.2e-35 151.8 149 63.8
CDE05G0568 Ceratophyllum demersum HOM05D004761 ORTHO05D005813 1.1e-34 151.0 143 62.2
AT3G25920 Arabidopsis thaliana HOM05D004761 ORTHO05D005813 1.4e-34 150.6 159 59.1
BcaC06g31103 Brassica carinata HOM05D004761 ORTHO05D005813 1.4e-34 150.6 152 59.2
A06p42360 Brassica napus HOM05D004761 ORTHO05D005813 1.8e-34 150.2 154 63.0
BraA06t27151Z Brassica rapa HOM05D004761 ORTHO05D005813 1.8e-34 150.2 154 63.0
Migut.E00345 Erythranthe guttata HOM05D004761 ORTHO05D005813 1.8e-34 150.2 151 58.3
Aa31LG2G6400 Aethionema arabicum HOM05D004761 ORTHO05D005813 2.4e-34 149.8 155 61.3
Duzib248G0790 Durio zibethinus HOM05D004761 ORTHO05D005813 2.4e-34 149.8 146 60.3
Potri.008G121100 Populus trichocarpa HOM05D004761 ORTHO05D005813 2.4e-34 149.8 127 67.7
Ah.03g137610 Amaranthus hybridus HOM05D004761 ORTHO05D005813 3.1e-34 149.4 153 60.8
Glyma.20G116100 Glycine max HOM05D004761 ORTHO05D005813 3.1e-34 149.4 128 67.2
PSO675G3483 Papaver somniferum HOM05D004761 ORTHO05D005813 3.1e-34 149.4 144 61.8
PSO717G0038 Papaver somniferum HOM05D004761 ORTHO05D005813 3.1e-34 149.4 148 60.8
Sabra08G0091800 Salix brachista HOM05D004761 ORTHO05D005813 3.1e-34 149.4 127 65.4
Gohir.A03G147200 Gossypium hirsutum HOM05D004761 ORTHO05D005813 4.0e-34 149.1 149 59.7
arahy.Tifrunner.gnm1.ann1.BGN30W Arachis hypogaea HOM05D004761 ORTHO05D005813 5.3e-34 148.7 133 65.4
Gohir.D02G170400 Gossypium hirsutum HOM05D004761 ORTHO05D005813 5.3e-34 148.7 146 59.6
Gohir.D11G344800 Gossypium hirsutum HOM05D004761 ORTHO05D005813 5.3e-34 148.7 148 64.2
Gorai.007G375200 Gossypium raimondii HOM05D004761 ORTHO05D005813 5.3e-34 148.7 148 64.2
SGA_v2.0_scaffold170G38770 Striga asiatica HOM05D004761 ORTHO05D005813 5.3e-34 148.7 145 58.6
arahy.Tifrunner.gnm1.ann1.QJ0JEK Arachis hypogaea HOM05D004761 ORTHO05D005813 6.9e-34 148.3 166 56.0
Carub.0005s0378 Capsella rubella HOM05D004761 ORTHO05D005813 6.9e-34 148.3 153 57.5
Potri.010G124301 Populus trichocarpa HOM05D004761 ORTHO05D005813 6.9e-34 148.3 128 68.8
Sopen05g005170 Solanum pennellii HOM05D004761 ORTHO05D005813 6.9e-34 148.3 151 58.3
THA.LOC104825698 Tarenaya hassleriana HOM05D004761 ORTHO05D005813 6.9e-34 148.3 153 59.5
BraA09t38096Z Brassica rapa HOM05D004761 ORTHO05D005813 1.2e-33 147.5 158 58.2
CARHR146910 Cardamine hirsuta HOM05D004761 ORTHO05D005813 1.2e-33 147.5 160 58.8
Actinidia16656 Actinidia chinensis HOM05D004761 ORTHO05D005813 1.5e-33 147.1 148 62.2
Ah.02g127920 Amaranthus hybridus HOM05D004761 ORTHO05D005813 2.0e-33 146.7 155 58.1
A09p25090 Brassica napus HOM05D004761 ORTHO05D005813 2.0e-33 146.7 158 58.2
RcHm_v2.0_Chr4g0435111 Rosa chinensis HOM05D004761 ORTHO05D005813 2.0e-33 146.7 145 62.1
arahy.Tifrunner.gnm1.ann1.B0KB7I Arachis hypogaea HOM05D004761 ORTHO05D005813 2.6e-33 146.4 163 57.7
arahy.Tifrunner.gnm1.ann1.8WFG9Z Arachis hypogaea HOM05D004761 ORTHO05D005813 3.4e-33 146.0 163 56.4
Hund25060 Selenicereus undatus HOM05D004761 ORTHO05D005813 5.8e-33 145.2 152 55.3
HanXRQChr15g0476311 Helianthus annuus HOM05D004761 ORTHO05D005813 7.6e-33 144.8 145 59.3
Lsat_1_v5_gn_3_59080 Lactuca sativa HOM05D004761 ORTHO05D005813 7.6e-33 144.8 149 57.7
VMungo0720G0616 Vigna mungo HOM05D004761 ORTHO05D005813 1.3e-32 144.1 126 67.5
HPP92_009433 Vanilla planifolia HOM05D004761 ORTHO05D005813 1.7e-32 143.7 151 60.9
ATR0171G026 Amborella trichopoda HOM05D004761 ORTHO05D005813 6.5e-32 141.7 148 60.8
TPR.G18808 Trifolium pratense HOM05D004761 ORTHO05D000002 6.5e-32 141.7 144 59.7
Gorai.005G191400 Gossypium raimondii HOM05D004761 ORTHO05D005813 8.4e-32 141.4 97 75.3
Lj5g0002032 Lotus japonicus HOM05D004761 ORTHO05D005813 8.4e-32 141.4 147 59.9
Nitab4.5_0000791g0110 Nicotiana tabacum HOM05D004761 ORTHO05D005813 1.1e-31 141.0 131 61.1
Nitab4.5_0003373g0010 Nicotiana tabacum HOM05D004761 ORTHO05D005813 1.4e-31 140.6 144 56.2
ECA246G4195 Erigeron canadensis HOM05D004761 ORTHO05D005813 2.5e-31 139.8 146 60.3
HanXRQChr17g0552301 Helianthus annuus HOM05D004761 ORTHO05D005813 3.2e-31 139.4 140 59.3
Nn3g17852 Nelumbo nucifera HOM05D004761 ORTHO05D005813 3.2e-31 139.4 100 75.0
Phvul.007G027600 Phaseolus vulgaris HOM05D004761 ORTHO05D005813 3.2e-31 139.4 127 65.4
unitig_24.g30582 Utricularia gibba HOM05D004761 ORTHO05D005813 5.5e-31 138.7 149 57.7
Lj3C1014G6 Lonicera japonica HOM05D004761 ORTHO05D005813 9.3e-31 137.9 144 56.9
Psat6g225000 Pisum sativum HOM05D004761 ORTHO05D005813 4.6e-30 135.6 141 58.2
Lalb_Chr21g0308901 Lupinus albus HOM05D004761 ORTHO05D005813 7.9e-30 134.8 129 58.9
Zm00001eb008910 Zea mays HOM05D004761 ORTHO05D005813 1.0e-29 134.4 93 73.1
Medtr1g110750 Medicago truncatula HOM05D004761 ORTHO05D005813 1.3e-29 134.0 126 60.3
Rhsim09G0107700 Rhododendron simsii HOM05D004761 ORTHO05D005813 1.3e-29 134.0 150 56.7
AUR62002860 Chenopodium quinoa HOM05D004761 ORTHO05D005813 2.3e-29 133.3 97 73.2
SEGI_01542 Sequoiadendron giganteum HOM05D004761 ORTHO05D005813 2.3e-29 133.3 133 60.2
AUR62035212 Chenopodium quinoa HOM05D004761 ORTHO05D005813 3.0e-29 132.9 77 85.7
Lalb_Chr02g0145941 Lupinus albus HOM05D004761 ORTHO05D005813 3.9e-29 132.5 96 71.9
Os03g0219900 Oryza sativa ssp. japonica HOM05D004761 ORTHO05D005813 1.1e-28 131.0 145 53.8
vmacro10560 Vaccinium macrocarpon HOM05D004761 ORTHO05D005813 1.1e-28 131.0 180 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2844 Anthoceros agrestis HOM05D004761 ORTHO05D005813 2.8e-27 126.3 70 88.6
Pp3c20_9200 Physcomitrium patens HOM05D004761 ORTHO05D005813 8.2e-27 124.8 72 86.1
Pp3c23_7670 Physcomitrium patens HOM05D004761 ORTHO05D005813 8.2e-27 124.8 72 86.1
Pp3c8_18220 Physcomitrium patens HOM05D004761 ORTHO05D005813 8.2e-27 124.8 72 86.1
Pp3c24_11450 Physcomitrium patens HOM05D004761 ORTHO05D005813 1.8e-26 123.6 114 62.3
Mapoly0065s0007 Marchantia polymorpha HOM05D004761 ORTHO05D005813 2.4e-26 123.2 149 55.7
SMO203G0084 Selaginella moellendorffii HOM05D004761 ORTHO05D005813 6.9e-26 121.7 73 82.2
CBR_g6324 Chara braunii HOM05D004761 ORTHO05D005813 9.0e-26 121.3 70 85.7
Hma1.2p1_0798F.1_g219870 Hydrangea macrophylla HOM05D004761 ORTHO05D005813 2.2e-24 116.7 72 81.9
Cre14.g612450 Chlamydomonas reinhardtii HOM05D004761 ORTHO05D005813 3.2e-23 112.8 74 74.3
COL.COLO4_29942 Corchorus olitorius HOM05D004761 ORTHO05D005813 1.2e-22 110.9 61 90.2
MBI19_g21031_MAGBIO Magnolia biondii HOM05D004761 ORTHO05D005813 7.9e-22 108.2 56 92.9
PRCOL_00000889 Prasinoderma coloniale HOM05D004761 ORTHO05D005813 2.3e-21 106.7 70 74.3
TPR.G862 Trifolium pratense HOM05D004761 ORTHO05D005813 1.6e-19 100.5 53 90.6
Nn4g23851 Nelumbo nucifera HOM05D004761 ORTHO05D005813 5.9e-17 92.0 70 70.0
Aqoxy5G02814 Aquilegia oxysepala HOM05D004761 ORTHO05D005813 2.7e-14 83.2 44 88.6
unitig_22.g5574 Utricularia gibba HOM05D004761 ORTHO05D005813 7.9e-14 81.6 121 47.9
Oeu056574.1 Olea europaea HOM05D004761 ORTHO05D037944 1.3e-11 74.3 83 49.4
Solyc05g009370.4 Solanum lycopersicum HOM05D004761 ORTHO05D005813 2.2e-11 73.6 35 97.1
Sabra10G0094300 Salix brachista HOM05D004761 ORTHO05D005813 1.1e-10 71.2 37 86.5
Atru.chr11.97 Acer truncatum HOM05D004761 ORTHO05D005813 3.1e-10 69.7 116 44.8
Ca_11170_v3 Cicer arietinum L. HOM05D004761 ORTHO05D005813 3.1e-10 69.7 35 88.6
Atru.chr2.2517 Acer truncatum HOM05D004761 ORTHO05D005813 2.6e-09 66.6 35 88.6
Haze_26805 Corylus avellana HOM05D005288 ORTHO05D006574 1.0e-08 64.7 62 54.8
MCO09G351 Micromonas commoda HOM05D004761 ORTHO05D005813 1.3e-08 64.3 35 82.9
MSTRG.23423 Avicennia marina HOM05D005288 ORTHO05D006574 5.0e-08 62.4 61 54.1
Pp3c25_6490 Physcomitrium patens HOM05D005288 ORTHO05D006574 6.5e-08 62.0 61 54.1
Os08g0310100 Oryza sativa ssp. japonica HOM05D005288 ORTHO05D006574 1.1e-07 61.2 62 53.2
PRCOL_00002014 Prasinoderma coloniale HOM05D005288 ORTHO05D006574 1.1e-07 61.2 64 48.4
Hund15173 Selenicereus undatus HOM05D005288 ORTHO05D006574 1.4e-07 60.8 61 54.1
Zm00001eb129960 Zea mays HOM05D005288 ORTHO05D006574 1.4e-07 60.8 62 53.2
unitig_27.g25064 Utricularia gibba HOM05D005288 ORTHO05D006574 1.9e-07 60.5 61 52.5
SGA_v2.0_scaffold146G36155 Striga asiatica HOM05D005288 ORTHO05D006574 2.5e-07 60.1 61 52.5
SGA_v2.0_scaffold76G25165 Striga asiatica HOM05D005288 ORTHO05D006574 2.5e-07 60.1 61 52.5
MSTRG.2688 Avicennia marina HOM05D005288 ORTHO05D006574 4.2e-07 59.3 61 50.8
AUR62037110 Chenopodium quinoa HOM05D005288 ORTHO05D006574 5.5e-07 58.9 61 52.5
Sc22g0002320 Simmondsia chinensis HOM05D005288 ORTHO05D006574 5.5e-07 58.9 61 52.5
ATR0681G389 Amborella trichopoda HOM05D005288 ORTHO05D006574 7.2e-07 58.5 61 52.5
EL10As1g23109 Beta vulgaris HOM05D005288 ORTHO05D006574 7.2e-07 58.5 61 52.5
Migut.H01124 Erythranthe guttata HOM05D005288 ORTHO05D006574 7.2e-07 58.5 61 50.8
Ah.12g062320 Amaranthus hybridus HOM05D005288 ORTHO05D006574 9.4e-07 58.2 61 52.5
CAN.G1681.15 Capsicum annuum HOM05D005288 ORTHO05D006574 1.2e-06 57.8 87 42.5
GSVIVG01016205001 Vitis vinifera HOM05D005288 ORTHO05D006574 1.2e-06 57.8 61 52.5
Dinv09930 Davidia involucrata HOM05D005288 ORTHO05D006574 2.1e-06 57.0 61 50.8
Hma1.2p1_1099F.1_g256850 Hydrangea macrophylla HOM05D005288 ORTHO05D006574 2.1e-06 57.0 61 50.8
Lj4A865T28 Lonicera japonica HOM05D005288 ORTHO05D006574 2.1e-06 57.0 62 53.2
Nitab4.5_0002064g0080 Nicotiana tabacum HOM05D005288 ORTHO05D006574 2.1e-06 57.0 62 53.2
Nitab4.5_0007636g0020 Nicotiana tabacum HOM05D005288 ORTHO05D006574 2.1e-06 57.0 62 53.2
Oeu028499.1 Olea europaea HOM05D005288 ORTHO05D006574 2.1e-06 57.0 61 50.8
Oeu064304.2 Olea europaea HOM05D005288 ORTHO05D006574 2.1e-06 57.0 61 50.8
Actinidia14895 Actinidia chinensis HOM05D004761 ORTHO05D005813 2.7e-06 56.6 104 44.2
AagrBONN_evm.TU.Sc2ySwM_344.1252 Anthoceros agrestis HOM05D005288 ORTHO05D000776 2.7e-06 56.6 61 52.5
PGSC0003DMG400016731 Solanum tuberosum HOM05D005288 ORTHO05D006574 2.7e-06 56.6 61 50.8
CDE04G3439 Ceratophyllum demersum HOM05D005288 ORTHO05D006574 3.6e-06 56.2 53 56.6
Peaxi162Scf00129g00316 Petunia axillaris HOM05D005288 ORTHO05D006574 3.6e-06 56.2 129 38.8
DCAR_029930 Daucus carota HOM05D005288 ORTHO05D006574 4.7e-06 55.8 62 53.2
Solyc02g081310.3 Solanum lycopersicum HOM05D005288 ORTHO05D006574 4.7e-06 55.8 105 39.0
Atru.chr2.2498 Acer truncatum HOM05D004761 ORTHO05D037944 6.1e-06 55.5 32 81.2
CSS0028117 Camellia sinensis var. sinensis HOM05D005288 ORTHO05D006574 6.1e-06 55.5 61 49.2
CSS0042405 Camellia sinensis var. sinensis HOM05D005288 ORTHO05D006574 6.1e-06 55.5 61 49.2
AUR62042368 Chenopodium quinoa HOM05D005288 ORTHO05D006574 6.1e-06 55.5 61 50.8
Cc03_g13010 Coffea canephora HOM05D005288 ORTHO05D006574 7.9e-06 55.1 61 50.8
PSO238G0014 Papaver somniferum HOM05D005288 ORTHO05D006574 7.9e-06 55.1 61 49.2
Rhsim10G0141500 Rhododendron simsii HOM05D005288 ORTHO05D006574 7.9e-06 55.1 61 47.5
Sopen02g025940 Solanum pennellii HOM05D005288 ORTHO05D006574 7.9e-06 55.1 108 39.8
vmacro12445 Vaccinium macrocarpon HOM05D005288 ORTHO05D006574 7.9e-06 55.1 61 47.5
VMungo0464G1657 Vigna mungo HOM05D005288 ORTHO05D006574 7.9e-06 55.1 51 54.9


User provided reference genes

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