Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.7e-126 456.1 233 100.0
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 1.2e-73 280.4 263 62.0
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 2.6e-71 272.7 269 58.4
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 4.6e-68 261.9 274 55.5
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 5.6e-66 255.0 233 59.7
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 1.6e-65 253.4 242 59.5
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 8.1e-65 251.1 233 59.7
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 1.4e-64 250.4 234 57.7
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 2.4e-64 249.6 284 52.1
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 5.3e-64 248.4 270 53.7
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 1.2e-63 247.3 264 55.7
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 2.0e-63 246.5 189 66.7
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 2.6e-63 246.1 251 55.4
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 7.6e-63 244.6 256 56.2
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 7.6e-63 244.6 236 58.5
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 2.9e-62 242.7 236 57.2
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 3.8e-62 242.3 231 58.0
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 4.9e-62 241.9 228 58.3
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.9e-62 241.9 258 54.3
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 6.4e-62 241.5 238 56.3
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 8.4e-62 241.1 243 55.6
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 1.1e-61 240.7 229 57.2
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 1.1e-61 240.7 229 57.6
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.4e-61 239.6 242 55.4
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 3.2e-61 239.2 229 57.6
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 3.2e-61 239.2 215 59.5
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 4.2e-61 238.8 243 56.8
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 5.4e-61 238.4 180 67.2
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 7.1e-61 238.0 273 50.5
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 9.3e-61 237.7 222 60.4
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.2e-60 237.3 242 55.0
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 2.7e-60 236.1 152 75.0
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 3.5e-60 235.7 238 55.9
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 3.5e-60 235.7 239 55.6
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 4.6e-60 235.3 224 56.7
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 4.6e-60 235.3 264 52.7
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 7.9e-60 234.6 231 55.4
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 7.9e-60 234.6 237 54.0
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 7.9e-60 234.6 272 51.1
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 1.0e-59 234.2 229 57.6
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 1.3e-59 233.8 244 54.1
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.8e-59 233.4 233 54.5
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 5.1e-59 231.9 248 53.6
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 5.1e-59 231.9 223 57.8
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 6.7e-59 231.5 241 54.8
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 6.7e-59 231.5 266 51.5
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 6.7e-59 231.5 262 50.8
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 8.7e-59 231.1 255 53.3
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 8.7e-59 231.1 229 55.9
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.5e-58 230.3 223 57.4
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 1.5e-58 230.3 235 54.5
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 2.5e-58 229.6 261 52.1
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 2.5e-58 229.6 231 54.1
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 2.5e-58 229.6 244 54.1
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 4.3e-58 228.8 275 49.5
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 4.3e-58 228.8 262 51.9
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 5.6e-58 228.4 261 51.7
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 5.6e-58 228.4 153 75.8
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 7.4e-58 228.0 154 70.8
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 7.4e-58 228.0 238 54.2
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 7.4e-58 228.0 144 76.4
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 9.6e-58 227.6 231 56.3
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 9.6e-58 227.6 235 54.0
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 9.6e-58 227.6 249 51.8
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 1.3e-57 227.3 273 49.1
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.3e-57 227.3 223 56.5
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 1.3e-57 227.3 259 48.6
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 1.6e-57 226.9 270 50.4
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 1.6e-57 226.9 144 77.1
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 2.1e-57 226.5 233 53.6
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 2.1e-57 226.5 140 78.6
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 2.1e-57 226.5 257 52.9
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 2.8e-57 226.1 234 54.3
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 2.8e-57 226.1 274 49.3
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 2.8e-57 226.1 222 55.4
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 3.7e-57 225.7 279 48.4
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 4.8e-57 225.3 152 73.7
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 4.8e-57 225.3 231 54.1
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 6.2e-57 224.9 232 51.7
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 6.2e-57 224.9 275 47.6
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 6.2e-57 224.9 230 52.6
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 6.2e-57 224.9 255 52.5
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 6.2e-57 224.9 227 52.9
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 8.1e-57 224.6 230 55.2
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 8.1e-57 224.6 274 48.9
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 1.1e-56 224.2 273 46.9
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.4e-56 223.0 147 75.5
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.4e-56 223.0 280 47.5
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 3.1e-56 222.6 266 50.0
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 4.0e-56 222.2 229 54.6
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 5.3e-56 221.9 145 76.6
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 6.9e-56 221.5 269 48.7
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 6.9e-56 221.5 245 50.2
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 2.0e-55 219.9 269 48.3
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 2.0e-55 219.9 215 56.7
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 2.0e-55 219.9 219 54.8
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 5.8e-55 218.4 290 46.2
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 7.6e-55 218.0 224 54.0
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 7.6e-55 218.0 304 45.1
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 7.6e-55 218.0 222 54.1
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.3e-54 217.2 147 71.4
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 2.2e-54 216.5 271 46.5
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 3.8e-54 215.7 150 70.0
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 4.9e-54 215.3 260 48.8
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 6.4e-54 214.9 159 68.6
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 1.4e-53 213.8 232 50.4
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 4.2e-53 212.2 147 70.7
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.2e-52 210.7 231 52.4
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 1.2e-52 210.7 213 51.6
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.1e-52 209.9 227 52.4
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 1.0e-51 207.6 264 45.1
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.5e-50 203.8 245 47.8
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 1.9e-50 203.4 292 44.5
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 3.3e-50 202.6 224 48.2
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 3.3e-50 202.6 206 54.9
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.3e-50 202.2 165 63.0
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.1e-49 199.9 231 49.8
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 3.7e-49 199.1 256 46.1
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 3.7e-49 199.1 139 70.5
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 1.1e-48 197.6 146 65.8
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 2.4e-48 196.4 265 44.9
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 3.1e-48 196.1 281 44.5
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 4.5e-47 192.2 135 69.6
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.9e-46 188.7 153 60.8
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 8.7e-43 177.9 261 46.4
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 1.1e-42 177.6 197 51.8
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 3.3e-42 176.0 138 63.8
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 3.7e-41 172.6 296 40.2
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 6.3e-41 171.8 276 39.5
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 5.3e-40 168.7 153 55.6
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 3.4e-39 166.0 143 58.7
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 7.2e-37 158.3 96 79.2
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.6e-36 155.6 263 42.6
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 6.7e-35 151.8 197 49.7
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 6.3e-33 145.2 233 40.3
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 5.0e-30 135.6 219 37.0
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 3.9e-27 125.9 96 66.7
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.4e-26 121.7 188 45.2
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 8.2e-25 118.2 136 48.5
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 8.5e-22 108.2 78 67.9
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.1e-21 107.8 78 67.9
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 1.3e-17 94.4 152 37.5
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 3.7e-17 92.8 72 62.5
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 8.2e-17 91.7 152 36.2
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 3.2e-13 79.7 131 38.2
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.8e-09 66.6 132 34.8
Ca_28882_v3 Cicer arietinum L. HOM05D004983 ORTHO05D005847 1.7e-06 57.4 213 27.7


User provided reference genes

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