Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 4.2e-137 491.5 273 100.0
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 2.6e-99 365.9 300 67.3
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 7.7e-99 364.4 327 62.4
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 1.3e-98 363.6 295 65.8
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 5.5e-97 358.2 303 64.0
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.6e-96 356.7 256 73.0
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.1e-96 356.3 256 70.7
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 2.7e-96 355.9 258 70.5
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 3.6e-96 355.5 303 64.4
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 8.0e-96 354.4 303 63.4
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 3.0e-95 352.4 303 63.0
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 8.8e-95 350.9 256 70.7
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 8.8e-95 350.9 256 70.7
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 1.5e-94 350.1 256 69.9
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.0e-94 349.7 258 70.2
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 2.0e-94 349.7 257 69.6
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 2.6e-94 349.4 257 69.6
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 3.3e-94 349.0 257 71.2
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.7e-94 348.2 256 70.7
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 5.7e-94 348.2 270 67.0
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 7.5e-94 347.8 258 70.2
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 7.5e-94 347.8 252 70.2
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 9.7e-94 347.4 308 62.0
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 1.7e-93 346.7 259 69.1
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 1.7e-93 346.7 256 69.5
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 4.8e-93 345.1 258 69.0
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 4.8e-93 345.1 257 69.3
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 4.8e-93 345.1 257 69.3
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 4.8e-93 345.1 290 63.4
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.4e-92 343.6 301 64.1
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.4e-92 343.6 257 68.9
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.8e-92 343.2 257 68.9
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 3.1e-92 342.4 301 62.8
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 3.1e-92 342.4 256 68.0
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 4.1e-92 342.0 256 68.4
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 4.1e-92 342.0 248 70.6
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 5.3e-92 341.7 256 69.1
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 5.3e-92 341.7 256 69.1
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 7.0e-92 341.3 256 66.4
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 7.0e-92 341.3 295 61.4
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 7.0e-92 341.3 256 68.0
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 9.1e-92 340.9 256 67.6
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.1e-92 340.9 256 68.8
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.6e-91 340.1 298 61.7
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 2.7e-91 339.3 295 61.7
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 2.7e-91 339.3 255 69.0
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.7e-91 339.3 256 68.0
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.5e-91 339.0 256 66.8
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 3.5e-91 339.0 302 60.6
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 3.5e-91 339.0 298 62.1
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 3.5e-91 339.0 300 62.3
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 7.7e-91 337.8 256 66.0
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 7.7e-91 337.8 258 67.1
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.0e-90 337.4 255 67.5
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 1.0e-90 337.4 252 65.9
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 1.0e-90 337.4 300 61.7
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.0e-90 337.4 256 67.6
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 1.3e-90 337.0 256 66.4
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 2.2e-90 336.3 255 67.1
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 2.9e-90 335.9 257 64.6
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 2.9e-90 335.9 257 66.5
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 2.9e-90 335.9 256 66.8
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 3.8e-90 335.5 256 65.6
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 3.8e-90 335.5 256 68.0
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 5.0e-90 335.1 256 66.0
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 6.5e-90 334.7 251 65.7
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 6.5e-90 334.7 256 66.0
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 6.5e-90 334.7 251 65.7
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 6.5e-90 334.7 256 66.0
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 6.5e-90 334.7 251 65.7
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 6.5e-90 334.7 249 67.9
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 8.5e-90 334.3 256 66.8
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 1.1e-89 334.0 255 67.5
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.5e-89 333.6 278 63.7
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.9e-89 333.2 256 66.0
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 2.5e-89 332.8 255 65.5
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 3.2e-89 332.4 256 64.8
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 3.2e-89 332.4 255 65.9
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 2.1e-88 329.7 249 65.9
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 2.1e-88 329.7 259 64.9
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 2.1e-88 329.7 259 64.9
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 2.7e-88 329.3 294 61.9
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 2.7e-88 329.3 257 63.4
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 3.6e-88 328.9 257 66.9
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 3.6e-88 328.9 257 63.4
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 4.7e-88 328.6 256 66.8
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 5.2e-87 325.1 252 67.1
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 5.2e-87 325.1 252 67.1
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.2e-86 323.9 256 64.8
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 2.0e-86 323.2 307 59.6
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 2.6e-86 322.8 258 65.5
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.6e-86 322.8 257 64.2
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 4.4e-86 322.0 259 64.9
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 4.4e-86 322.0 251 65.7
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 4.4e-86 322.0 267 64.0
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 2.2e-85 319.7 301 59.8
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 2.2e-85 319.7 209 77.0
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 2.2e-85 319.7 214 75.7
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 3.7e-85 318.9 273 63.7
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 6.3e-85 318.2 257 63.4
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 3.1e-84 315.8 253 62.8
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 7.0e-84 314.7 263 62.0
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 7.0e-84 314.7 311 57.6
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 9.1e-84 314.3 194 75.8
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 2.0e-83 313.2 257 65.8
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 2.0e-83 313.2 256 64.5
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 7.7e-83 311.2 247 64.4
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 1.0e-82 310.8 235 65.1
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 1.3e-82 310.5 272 60.7
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 3.4e-78 295.8 253 58.9
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 1.8e-76 290.0 227 64.3
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 3.2e-76 289.3 256 59.4
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 5.9e-75 285.0 255 58.0
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 1.5e-73 280.4 212 65.1
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 9.5e-73 277.7 254 56.3
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 1.6e-72 276.9 211 68.7
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 1.4e-71 273.9 176 76.1
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 4.0e-71 272.3 260 55.0
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 4.4e-70 268.9 210 62.9
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.5e-70 268.1 178 74.7
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.3e-69 267.3 176 76.7
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 2.2e-69 266.5 252 54.0
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 1.6e-67 260.4 257 54.5
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 1.0e-66 257.7 257 51.8
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.0e-66 255.4 258 51.6
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 5.6e-65 251.9 256 53.1
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 3.1e-63 246.1 258 50.4
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 4.4e-62 242.3 214 56.1
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 4.3e-57 225.7 276 47.1
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 1.1e-47 194.5 213 47.4
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 4.0e-47 192.6 129 72.1
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 1.3e-45 187.6 142 67.6
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 4.2e-44 182.6 142 65.5
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 3.5e-43 179.5 142 66.2
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.6e-43 179.1 240 44.6
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 7.8e-43 178.3 142 64.8
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.3e-40 171.0 155 61.9
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.6e-40 170.6 203 47.8
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 3.6e-40 169.5 226 44.2
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 1.2e-38 164.5 228 43.4
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 9.6e-33 144.8 114 67.5
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 4.0e-31 139.4 124 61.3
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 5.3e-31 139.0 253 35.6
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 2.4e-28 130.2 157 45.9
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 3.5e-27 126.3 159 49.1
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 7.9e-27 125.2 129 52.7
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 1.3e-24 117.9 82 67.1
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 1.5e-22 110.9 86 62.8
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 3.8e-21 106.3 196 39.8
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 8.4e-21 105.1 72 66.7
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 3.2e-20 103.2 135 47.4
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.1e-17 94.7 52 80.8
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.6e-16 90.9 62 69.4
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 1.8e-15 87.4 50 84.0
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 3.1e-15 86.7 84 54.8
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 9.3e-12 75.1 221 27.6
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 3.9e-10 69.7 111 33.3
Actinidia27648 Actinidia chinensis HOM05D004215 ORTHO05D052913 9.7e-09 65.1 154 37.0
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 1.3e-08 64.7 225 25.3
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 1.1e-07 61.6 225 26.2
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 1.5e-06 57.8 177 24.9
Mapoly0062s0041 Marchantia polymorpha HOM05D000565 ORTHO05D004389 1.0e-05 55.1 126 29.4


User provided reference genes

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