Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 8.1e-222 773.5 403 100.0
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 4.7e-153 545.0 340 82.9
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 1.4e-144 516.9 366 77.0
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 8.9e-144 514.2 359 76.9
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 2.6e-143 512.7 361 76.2
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 7.0e-141 504.6 357 75.9
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 3.9e-139 498.8 357 76.5
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 5.0e-139 498.4 359 75.5
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 6.6e-139 498.0 356 74.7
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 9.5e-138 494.2 363 73.6
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 9.5e-138 494.2 301 85.0
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 1.4e-136 490.3 356 74.2
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 4.0e-136 488.8 366 73.0
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 4.0e-136 488.8 361 74.0
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 4.0e-136 488.8 368 72.8
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 4.0e-136 488.8 366 74.3
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 5.2e-136 488.4 371 73.3
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 5.2e-136 488.4 355 74.1
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 1.2e-135 487.3 366 73.2
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.2e-135 487.3 361 74.0
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 1.2e-135 487.3 363 73.6
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 1.5e-135 486.9 361 74.5
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 2.6e-135 486.1 313 81.8
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 4.4e-135 485.3 361 74.2
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 5.8e-135 485.0 361 74.0
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 7.5e-135 484.6 359 72.7
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 1.3e-134 483.8 365 74.5
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 2.9e-134 482.6 362 73.8
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 2.9e-134 482.6 356 74.2
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 8.3e-134 481.1 366 73.2
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 5.4e-133 478.4 368 74.2
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 7.1e-133 478.0 357 72.5
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 9.2e-133 477.6 361 72.9
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.2e-132 477.2 368 73.6
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.2e-132 477.2 368 73.9
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 6.0e-132 474.9 361 74.0
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 7.8e-132 474.6 346 75.4
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 1.3e-131 473.8 361 72.6
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 1.3e-131 473.8 363 72.7
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 1.3e-131 473.8 313 80.5
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 3.9e-131 472.2 310 78.4
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 8.6e-131 471.1 369 71.3
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 8.6e-131 471.1 311 80.4
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 8.6e-131 471.1 356 71.3
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 1.1e-130 470.7 362 72.9
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 3.3e-130 469.2 351 73.2
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 3.3e-130 469.2 360 72.5
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 4.3e-130 468.8 363 70.5
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 4.3e-130 468.8 326 73.9
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 4.3e-130 468.8 326 73.9
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 7.3e-130 468.0 330 74.5
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 9.5e-130 467.6 311 79.7
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 1.2e-129 467.2 369 70.5
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 1.6e-129 466.8 360 72.8
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 2.1e-129 466.5 293 82.9
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 2.8e-129 466.1 374 70.3
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 3.6e-129 465.7 350 74.0
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 3.6e-129 465.7 368 70.4
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 3.6e-129 465.7 350 71.7
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 4.7e-129 465.3 363 69.7
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 6.2e-129 464.9 329 75.4
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 1.1e-128 464.2 360 71.9
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 2.3e-128 463.0 364 71.4
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 3.1e-128 462.6 357 70.9
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 3.1e-128 462.6 365 69.0
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 4.0e-128 462.2 357 71.7
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 4.0e-128 462.2 331 73.7
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 6.8e-128 461.5 360 70.8
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 6.8e-128 461.5 359 73.0
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 6.8e-128 461.5 371 70.6
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 8.9e-128 461.1 357 70.9
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 8.9e-128 461.1 371 70.6
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 1.2e-127 460.7 304 78.0
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 1.2e-127 460.7 341 72.4
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 1.5e-127 460.3 348 73.0
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 2.0e-127 459.9 362 71.5
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 2.0e-127 459.9 357 71.4
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 7.6e-127 458.0 379 66.8
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 9.9e-127 457.6 360 70.3
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 9.9e-127 457.6 281 84.0
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 1.3e-126 457.2 417 63.5
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 1.3e-126 457.2 417 63.5
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 1.7e-126 456.8 364 70.1
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 2.9e-126 456.1 365 69.9
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 2.9e-126 456.1 363 70.8
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 2.9e-126 456.1 389 66.3
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 3.8e-126 455.7 367 67.6
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 6.4e-126 454.9 365 69.3
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 8.4e-126 454.5 281 83.3
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 8.4e-126 454.5 360 69.4
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 1.4e-125 453.8 368 67.7
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 1.9e-125 453.4 365 69.6
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 3.2e-125 452.6 361 69.5
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 4.1e-125 452.2 363 70.0
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 9.2e-125 451.1 361 69.0
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.2e-124 450.7 357 70.9
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 2.1e-124 449.9 362 70.2
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 3.5e-124 449.1 346 70.5
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 4.6e-124 448.7 295 78.3
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.0e-123 447.6 358 67.3
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 1.3e-123 447.2 358 69.3
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 1.7e-123 446.8 277 83.4
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 2.3e-123 446.4 363 69.1
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 2.3e-123 446.4 363 69.1
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 3.0e-123 446.0 363 69.4
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 3.9e-123 445.7 260 87.7
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 3.9e-123 445.7 330 73.9
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 6.6e-123 444.9 361 68.4
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.1e-122 444.1 357 69.7
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 1.5e-122 443.7 361 68.4
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.5e-122 443.7 361 68.4
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.5e-122 443.7 361 68.4
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.5e-122 443.0 357 69.5
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 3.3e-122 442.6 330 73.3
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 2.8e-121 439.5 290 78.6
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 8.1e-121 438.0 358 68.4
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 4.0e-120 435.6 289 77.5
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 4.4e-119 432.2 361 68.1
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.2e-117 426.0 279 78.9
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 9.3e-117 424.5 448 56.7
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 2.7e-116 422.9 244 89.3
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 1.7e-115 420.2 355 67.0
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 1.1e-114 417.5 362 68.0
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.5e-114 416.4 290 76.9
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.3e-113 414.1 395 60.3
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 8.1e-113 411.4 305 71.1
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 4.0e-112 409.1 379 61.2
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 4.5e-111 405.6 342 66.7
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 4.9e-110 402.1 225 90.2
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.1e-109 401.0 275 75.6
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 3.2e-109 399.4 273 76.6
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 2.1e-108 396.7 249 80.3
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 6.0e-108 395.2 277 75.8
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 1.5e-106 390.6 285 72.6
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 2.1e-105 386.7 241 80.1
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 4.3e-98 362.5 278 66.2
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 1.9e-93 347.1 309 63.4
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 3.0e-91 339.7 293 65.9
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 6.7e-91 338.6 240 72.5
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 2.8e-89 333.2 255 67.1
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 4.2e-85 319.3 321 59.2
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 6.5e-70 268.9 253 59.3
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 9.1e-64 248.4 155 81.3
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 2.6e-63 246.9 161 78.3
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 1.3e-57 228.0 153 77.1
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 1.3e-57 228.0 153 77.1
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 4.8e-49 199.5 108 96.3
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 7.3e-37 159.1 102 80.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.2e-36 158.3 99 81.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 3.4e-34 150.2 121 66.1
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 7.5e-34 149.1 117 66.7
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 7.5e-26 122.5 233 40.8
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 5.0e-22 109.8 61 90.2
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 1.2e-20 105.1 64 87.5
Actinidia33630 Actinidia chinensis HOM05D004794 ORTHO05D055622 9.2e-08 62.4 92 47.8


User provided reference genes

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